Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 8.4e-76 287.3 192 100.0
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.5e-72 275.8 195 96.4
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.5e-72 275.8 195 96.4
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 9.3e-67 257.3 147 89.8
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.7e-64 248.1 146 92.5
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.4e-64 247.7 146 89.7
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 7.9e-58 227.6 146 87.7
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.4e-57 226.9 139 87.8
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 3.9e-57 225.3 160 78.8
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 5.1e-57 224.9 148 81.8
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.1e-56 223.8 148 84.5
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.5e-56 223.4 150 83.3
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.3e-55 220.3 145 87.6
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 4.8e-55 218.4 147 81.0
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 8.2e-55 217.6 152 82.2
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 8.2e-55 217.6 147 81.0
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.1e-54 217.2 149 84.6
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.8e-54 216.5 155 78.1
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 6.9e-54 214.5 147 84.4
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 6.9e-54 214.5 159 79.2
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.2e-53 213.8 146 80.8
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.6e-53 212.6 146 82.9
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 2.6e-53 212.6 148 83.1
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.6e-53 212.6 147 83.0
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.6e-53 212.6 150 80.7
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 3.4e-53 212.2 146 80.1
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 4.5e-53 211.8 153 82.4
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 7.7e-53 211.1 155 78.7
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 1.0e-52 210.7 157 80.3
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.3e-52 210.3 148 83.1
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.3e-52 210.3 147 82.3
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 1.3e-52 210.3 150 80.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 5.0e-52 208.4 155 78.1
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 5.0e-52 208.4 157 78.3
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 5.0e-52 208.4 160 80.0
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.5e-52 208.0 157 80.3
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.5e-52 208.0 157 80.3
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 8.5e-52 207.6 194 77.8
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 8.5e-52 207.6 150 82.7
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.1e-51 207.2 146 81.5
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.1e-51 207.2 156 79.5
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.4e-51 206.8 153 81.7
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.4e-51 206.8 149 79.2
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.4e-51 206.8 159 75.5
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.4e-51 206.8 142 83.8
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.9e-51 206.5 149 79.9
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 153 71.2
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 2.5e-51 206.1 150 79.3
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 2.5e-51 206.1 150 79.3
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 2.5e-51 206.1 150 79.3
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.2e-51 205.7 153 78.4
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 3.2e-51 205.7 156 80.1
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.2e-51 205.7 157 79.6
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 4.2e-51 205.3 154 78.6
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 4.2e-51 205.3 202 69.8
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 4.2e-51 205.3 164 73.2
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 5.5e-51 204.9 156 78.8
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 7.2e-51 204.5 153 77.8
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 7.2e-51 204.5 155 77.4
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 7.2e-51 204.5 141 81.6
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 7.2e-51 204.5 153 81.0
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 7.2e-51 204.5 156 80.1
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 9.4e-51 204.1 146 82.9
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 9.4e-51 204.1 152 80.3
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.2e-50 203.8 144 80.6
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.6e-50 203.4 162 77.2
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.6e-50 203.4 150 78.0
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 2.1e-50 203.0 160 77.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 2.1e-50 203.0 160 77.5
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.1e-50 203.0 147 78.2
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.1e-50 203.0 151 76.8
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 2.7e-50 202.6 153 77.8
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 3.6e-50 202.2 153 70.6
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 3.6e-50 202.2 148 79.7
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 4.7e-50 201.8 208 67.3
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 4.7e-50 201.8 154 76.6
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 4.7e-50 201.8 149 81.2
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 6.1e-50 201.4 151 78.1
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 6.1e-50 201.4 162 77.8
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.1e-50 201.4 145 82.1
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.1e-50 201.4 145 82.1
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.1e-50 201.4 145 82.1
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 7.9e-50 201.1 146 80.1
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.0e-49 200.7 136 83.1
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.4e-49 200.3 158 74.1
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.4e-49 200.3 196 75.0
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 2.3e-49 199.5 179 63.1
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 2.3e-49 199.5 142 95.1
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 2.3e-49 199.5 151 76.8
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 3.9e-49 198.7 163 75.5
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 3.9e-49 198.7 160 76.2
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 5.1e-49 198.4 158 75.9
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 5.1e-49 198.4 148 79.1
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 5.1e-49 198.4 148 77.0
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.7e-49 198.0 145 80.0
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.7e-49 198.0 145 80.0
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.7e-49 198.0 145 80.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 6.7e-49 198.0 151 78.1
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 6.7e-49 198.0 163 73.6
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 6.7e-49 198.0 155 74.8
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 8.8e-49 197.6 153 77.8
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 8.8e-49 197.6 147 78.2
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 8.8e-49 197.6 168 65.5
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 8.8e-49 197.6 147 79.6
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-48 197.2 175 65.1
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-48 197.2 175 65.1
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.1e-48 197.2 164 72.0
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.1e-48 197.2 149 78.5
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.5e-48 196.8 138 82.6
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 2.0e-48 196.4 154 77.3
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 2.6e-48 196.1 167 64.1
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.6e-48 196.1 152 77.6
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.3e-48 195.7 149 77.9
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 3.3e-48 195.7 154 75.3
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 4.4e-48 195.3 145 77.2
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 7.4e-48 194.5 155 77.4
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 7.4e-48 194.5 154 76.0
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 1.3e-47 193.7 160 69.4
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.7e-47 193.4 167 63.5
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.7e-47 193.4 167 63.5
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.7e-47 193.4 167 63.5
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.2e-47 193.0 145 77.9
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.2e-47 193.0 145 77.9
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.2e-47 193.0 144 77.8
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 3.7e-47 192.2 154 75.3
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 4.8e-47 191.8 157 74.5
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 6.3e-47 191.4 143 80.4
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 6.3e-47 191.4 148 72.3
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 8.2e-47 191.0 149 76.5
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 8.2e-47 191.0 157 75.2
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 1.4e-46 190.3 150 75.3
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.8e-46 189.9 165 72.7
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.1e-46 188.7 152 73.7
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 9.1e-46 187.6 149 73.8
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.2e-45 187.2 173 66.5
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.2e-45 187.2 141 80.1
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.2e-45 187.2 141 80.1
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.0e-45 186.4 230 65.2
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 2.6e-45 186.0 149 73.2
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 1.7e-44 183.3 110 80.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 2.5e-43 179.5 90 94.4
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.2e-43 178.7 89 95.5
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 9.4e-43 177.6 110 78.2
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 4.7e-42 175.3 154 66.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.4e-41 173.7 150 69.3
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 3.9e-41 172.2 89 91.0
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.1e-40 170.6 97 82.5
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 2.6e-40 169.5 159 64.2
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 2.6e-37 159.5 80 93.8
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 9.4e-35 151.0 128 67.2
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 2.3e-33 146.4 133 62.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 2.8e-31 139.4 80 77.5
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 6.3e-31 138.3 148 60.8
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 4.5e-29 132.1 109 67.0
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 5.9e-29 131.7 93 74.2
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 6.1e-26 121.7 76 67.1
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 9.8e-24 114.4 142 54.9
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.2e-23 113.2 99 62.6
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 3.7e-23 112.5 100 63.0
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.1e-22 110.9 56 94.6
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 4.1e-22 109.0 100 61.0
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 9.1e-22 107.8 94 52.1
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.1e-18 96.7 50 82.0
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 5.6e-11 72.0 57 70.2
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.2e-10 70.9 79 57.0
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.1e-10 70.1 80 56.2
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.8e-10 69.7 79 57.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 2.3e-09 66.6 79 55.7
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 2.3e-09 66.6 79 55.7
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 2.3e-09 66.6 79 55.7
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 3.4e-08 62.8 45 66.7
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 9.8e-08 61.2 159 41.5


User provided reference genes

Program Settings