Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 5.3e-212 740.7 366 100.0
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 5.7e-190 667.5 381 90.0
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 8.3e-181 637.1 380 83.9
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 8.3e-181 637.1 350 91.7
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 2.1e-160 569.3 349 80.8
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 7.9e-123 444.5 351 66.4
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 1.7e-122 443.4 354 64.4
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 1.6e-120 436.8 372 61.6
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 2.1e-120 436.4 353 62.9
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 3.4e-118 429.1 382 59.7
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 9.9e-118 427.6 380 59.5
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 2.2e-117 426.4 335 65.7
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 2.2e-117 426.4 356 60.7
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 3.8e-117 425.6 353 62.3
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 1.4e-116 423.7 334 64.1
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 1.4e-116 423.7 359 59.1
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 3.2e-116 422.5 329 62.9
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 5.5e-116 421.8 342 61.4
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 1.2e-115 420.6 342 61.4
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 2.1e-115 419.9 343 60.6
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 2.1e-115 419.9 361 60.4
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 2.1e-115 419.9 353 60.3
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 2.7e-115 419.5 349 59.9
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 4.6e-115 418.7 358 59.2
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 5.1e-114 415.2 372 58.1
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 3.3e-113 412.5 339 61.1
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 3.3e-113 412.5 339 61.1
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 3.3e-113 412.5 332 61.1
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 4.3e-113 412.1 344 61.9
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 4.3e-113 412.1 352 61.9
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 7.4e-113 411.4 346 59.8
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 9.6e-113 411.0 338 60.4
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 9.6e-113 411.0 360 58.1
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 2.8e-112 409.5 333 61.0
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 4.8e-112 408.7 332 62.0
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 6.2e-112 408.3 330 61.8
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 1.1e-111 407.5 333 62.2
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 1.1e-111 407.5 433 52.9
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 1.8e-111 406.8 350 60.9
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 2.4e-111 406.4 333 61.0
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 3.1e-111 406.0 343 61.8
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 9.0e-111 404.4 351 59.0
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 9.0e-111 404.4 339 59.0
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 2.6e-110 402.9 333 61.3
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 1.3e-109 400.6 370 55.7
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 1.7e-109 400.2 391 53.5
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 1.7e-109 400.2 377 55.2
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 1.7e-109 400.2 355 57.7
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 1.7e-109 400.2 368 57.3
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 2.2e-109 399.8 365 57.8
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 2.2e-109 399.8 384 54.7
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 2.2e-109 399.8 364 57.4
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 4.9e-109 398.7 364 57.1
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 4.9e-109 398.7 364 57.1
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 4.9e-109 398.7 340 59.7
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 6.5e-109 398.3 351 58.4
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 8.4e-109 397.9 365 58.6
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 1.1e-108 397.5 364 56.9
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 1.9e-108 396.7 344 58.4
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 4.2e-108 395.6 364 56.3
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 4.2e-108 395.6 343 60.3
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 5.5e-108 395.2 366 57.7
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 1.6e-107 393.7 377 56.8
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 1.6e-107 393.7 332 61.7
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.6e-107 393.7 332 61.4
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.6e-107 393.7 334 60.5
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 1.6e-107 393.7 378 55.8
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 2.1e-107 393.3 355 56.9
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 2.1e-107 393.3 355 56.9
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 2.1e-107 393.3 330 60.3
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.7e-107 392.9 332 61.4
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 3.5e-107 392.5 367 56.4
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 3.5e-107 392.5 359 56.8
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.6e-107 392.1 332 61.1
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 6.0e-107 391.7 364 55.8
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 1.8e-106 390.2 365 56.4
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 4.3e-105 385.6 379 54.4
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 5.7e-105 385.2 344 58.4
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 7.4e-105 384.8 364 54.7
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 3.7e-104 382.5 360 54.2
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 4.8e-104 382.1 369 55.0
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 5.3e-103 378.6 345 60.6
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 7.6e-102 374.8 374 54.0
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.0e-101 374.4 352 58.0
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.0e-101 374.4 460 46.1
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 1.4e-100 370.5 371 53.9
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 2.5e-100 369.8 362 53.0
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 2.5e-100 369.8 349 53.9
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 6.1e-99 365.2 308 61.4
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 2.6e-94 349.7 309 59.2
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 5.9e-94 348.6 471 43.7
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.4e-90 337.4 423 46.6
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 2.6e-89 333.2 244 68.4
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 2.2e-88 330.1 386 47.7
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 1.1e-87 327.8 304 53.9
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 7.7e-86 321.6 252 61.9
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 9.4e-84 314.7 294 56.5
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 9.4e-84 314.7 431 43.2
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 1.0e-82 311.2 293 54.6
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 2.4e-79 300.1 335 52.2
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 3.5e-78 296.2 216 66.7
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 1.2e-75 287.7 386 44.3
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 1.0e-69 268.1 177 71.8
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 2.3e-66 256.9 180 70.6
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 5.7e-65 252.3 335 42.7
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 9.8e-65 251.5 371 40.2
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 1.7e-61 240.7 151 76.2
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 6.5e-61 238.8 286 45.8
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 1.5e-60 237.7 195 57.9
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 1.5e-60 237.7 333 42.9
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 6.1e-59 232.3 150 71.3
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 3.3e-52 209.9 141 72.3
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 2.5e-44 183.7 200 48.0
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 5.6e-44 182.6 208 49.0
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 1.4e-42 177.9 122 68.9
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.2e-35 154.8 202 45.0
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 1.2e-30 138.3 192 38.5
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 1.2e-27 128.3 93 67.7
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 1.6e-27 127.9 185 38.9
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 2.3e-26 124.0 135 50.4
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 9.9e-25 118.6 124 48.4
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.9e-20 104.4 89 57.3
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 1.2e-19 101.7 203 33.5
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 2.1e-19 100.9 65 70.8
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 4.7e-19 99.8 84 57.1
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 2.4e-18 97.4 70 64.3
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 2.4e-18 97.4 86 54.7
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 4.4e-17 93.2 80 56.2
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 5.8e-17 92.8 164 40.2
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 5.8e-17 92.8 99 49.5
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 1.7e-16 91.3 182 29.1
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 1.1e-15 88.6 83 50.6
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 1.1e-15 88.6 81 56.8
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 9.3e-15 85.5 80 50.0
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 4.6e-14 83.2 115 45.2
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.0e-13 82.0 59 62.7
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 1.3e-13 81.6 81 54.3
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 2.3e-13 80.9 91 50.5
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 6.6e-13 79.3 86 48.8
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 9.6e-12 75.5 188 28.7
FvH4_4g05840 Fragaria vesca HOM05D005043 ORTHO05D006182 2.1e-11 74.3 148 33.1
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 2.8e-11 73.9 47 72.3
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 2.8e-11 73.9 44 75.0
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 3.1e-10 70.5 52 67.3
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 2.2e-08 64.3 59 49.2
HPP92_025971 Vanilla planifolia HOM05D001448 ORTHO05D005781 4.9e-08 63.2 105 36.2
SMO118G0342 Selaginella moellendorffii HOM05D001448 ORTHO05D005781 4.2e-07 60.1 78 41.0
Zm00001eb094840 Zea mays HOM05D001448 ORTHO05D005781 5.4e-07 59.7 93 37.6
SEGI_22534 Sequoiadendron giganteum HOM05D001448 ORTHO05D005781 9.3e-07 58.9 120 30.0
CDE09G1103 Ceratophyllum demersum HOM05D001448 ORTHO05D005781 1.6e-06 58.2 105 32.4
Haze_24590 Corylus avellana HOM05D001448 ORTHO05D005781 1.6e-06 58.2 88 38.6
Haze_24594 Corylus avellana HOM05D001448 ORTHO05D005781 1.6e-06 58.2 88 38.6
Eucgr.K03285 Eucalyptus grandis HOM05D001448 ORTHO05D005781 2.1e-06 57.8 81 35.8
Mapoly0030s0138 Marchantia polymorpha HOM05D001448 ORTHO05D005781 2.1e-06 57.8 79 38.0
Cc01_g18530 Coffea canephora HOM05D001448 ORTHO05D005781 2.7e-06 57.4 89 38.2
vmacro14854 Vaccinium macrocarpon HOM05D001448 ORTHO05D005781 2.7e-06 57.4 80 38.8
Cfa002395 Carpinus fangiana HOM05D001448 ORTHO05D005781 3.5e-06 57.0 88 37.5
Rhsim01G0266300 Rhododendron simsii HOM05D001448 ORTHO05D005781 3.5e-06 57.0 78 38.5
Sc24g0003080 Simmondsia chinensis HOM05D001448 ORTHO05D005781 3.5e-06 57.0 114 32.5
Atru.chr5.1640 Acer truncatum HOM05D001448 ORTHO05D005781 4.6e-06 56.6 84 34.5
Actinidia09565 Actinidia chinensis HOM05D001448 ORTHO05D005781 4.6e-06 56.6 88 36.4
Dinv22438 Davidia involucrata HOM05D001448 ORTHO05D005781 4.6e-06 56.6 78 37.2
SGA_v2.0_scaffold138G35260 Striga asiatica HOM05D001448 ORTHO05D005781 4.6e-06 56.6 80 37.5
Mapoly0154s0015 Marchantia polymorpha HOM05D001448 ORTHO05D005781 6.0e-06 56.2 79 39.2
Ciclev10018683m.g Citrus clementina HOM05D001448 ORTHO05D005781 7.9e-06 55.8 85 32.9
MBI18_g10480_MAGBIO Magnolia biondii HOM05D001448 ORTHO05D005781 7.9e-06 55.8 115 31.3
MD10G1187800 Malus domestica HOM05D001448 ORTHO05D005781 7.9e-06 55.8 115 31.3
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 7.9e-06 55.8 31 77.4
Sc24g0002470 Simmondsia chinensis HOM05D001448 ORTHO05D005781 7.9e-06 55.8 119 31.9
THA.LOC104800882 Tarenaya hassleriana HOM05D001448 ORTHO05D005781 7.9e-06 55.8 97 34.0


User provided reference genes

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