Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.4e-230 802.0 446 100.0
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 4.8e-199 698.0 448 87.3
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 7.9e-194 680.6 448 85.9
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 1.5e-163 580.1 449 76.2
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 6.8e-161 571.2 451 74.9
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.5e-152 543.5 449 71.5
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 8.6e-140 501.1 451 67.6
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 1.4e-137 493.8 454 65.6
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 2.6e-136 489.6 457 65.4
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 5.8e-136 488.4 454 65.2
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 1.2e-130 470.7 461 64.0
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.5e-120 437.2 458 60.9
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 2.5e-115 419.9 456 59.9
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 9.6e-115 417.9 452 56.4
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.5e-112 409.1 447 55.9
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 1.6e-109 400.6 473 54.1
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 2.1e-109 400.2 452 56.0
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 3.0e-108 396.4 451 55.9
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 1.6e-106 390.6 458 53.3
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.2e-104 384.4 449 55.2
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 4.9e-103 379.0 447 54.8
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 1.1e-102 377.9 446 53.8
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 1.1e-102 377.9 446 53.8
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 1.4e-102 377.5 478 51.5
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 5.5e-102 375.6 464 51.7
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 4.6e-101 372.5 473 52.2
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 7.9e-101 371.7 449 53.0
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 1.8e-100 370.5 448 55.4
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 3.0e-100 369.8 448 53.8
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 3.9e-100 369.4 448 52.7
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 6.7e-100 368.6 450 53.8
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.5e-99 367.5 449 53.7
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 4.3e-99 365.9 481 49.3
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.3e-98 364.4 451 51.4
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 1.6e-98 364.0 483 50.7
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 3.1e-97 359.8 474 50.4
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 3.1e-97 359.8 505 49.5
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 2.0e-96 357.1 452 52.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.0e-96 357.1 495 49.1
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 5.8e-96 355.5 462 51.1
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 7.6e-96 355.1 454 50.9
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 2.9e-95 353.2 448 51.3
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 6.5e-95 352.1 451 51.7
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.1e-94 351.3 453 50.8
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 2.5e-94 350.1 456 51.1
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 4.2e-94 349.4 448 50.4
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 1.6e-93 347.4 452 50.9
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 3.5e-93 346.3 491 48.5
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.5e-93 346.3 450 50.9
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 4.6e-93 345.9 501 48.5
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 7.9e-93 345.1 464 48.3
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 7.9e-93 345.1 458 50.4
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 1.3e-92 344.4 473 51.2
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 8.7e-92 341.7 473 50.5
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.5e-91 340.1 456 49.1
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 4.3e-91 339.3 456 48.5
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 5.7e-91 339.0 450 50.4
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 7.4e-91 338.6 447 48.3
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 2.8e-90 336.7 447 49.7
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 4.8e-90 335.9 451 51.0
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 8.2e-90 335.1 473 46.1
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 1.1e-89 334.7 465 50.5
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 1.1e-89 334.7 472 48.7
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.4e-89 334.3 529 45.7
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 1.8e-89 334.0 462 49.8
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 3.1e-89 333.2 512 47.1
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 3.1e-89 333.2 480 50.0
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 2.0e-88 330.5 497 47.1
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 7.7e-88 328.6 474 48.1
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 7.7e-88 328.6 446 49.1
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 7.7e-88 328.6 454 48.9
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.0e-87 328.2 446 49.6
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 1.0e-87 328.2 441 49.7
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 1.3e-87 327.8 461 48.2
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 2.9e-87 326.6 479 48.2
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 8.5e-87 325.1 483 48.4
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 1.4e-86 324.3 455 47.9
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 2.5e-86 323.6 456 47.8
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 5.5e-86 322.4 496 46.2
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 9.4e-86 321.6 469 46.7
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 1.2e-85 321.2 464 49.8
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 1.6e-85 320.9 452 48.5
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 2.1e-85 320.5 452 50.4
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 3.6e-85 319.7 446 48.4
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 7.9e-85 318.5 451 49.7
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.0e-84 318.2 478 46.4
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 1.0e-84 318.2 465 49.5
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 1.4e-84 317.8 486 45.3
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 1.8e-84 317.4 452 48.9
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 3.0e-84 316.6 458 49.6
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.1e-83 314.7 467 46.9
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 1.1e-83 314.7 487 47.6
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 1.1e-83 314.7 455 47.9
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 1.1e-83 314.7 414 51.7
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 3.3e-83 313.2 457 48.8
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.3e-82 311.2 452 48.5
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 2.8e-82 310.1 458 47.2
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 8.2e-82 308.5 454 47.1
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.1e-81 308.1 460 48.7
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-81 308.1 454 48.2
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 1.8e-81 307.4 497 46.3
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 2.4e-81 307.0 456 46.1
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 4.1e-81 306.2 453 46.8
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 9.1e-81 305.1 468 46.2
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.6e-80 303.5 451 47.2
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 4.5e-80 302.8 459 47.5
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.0e-79 301.6 455 47.7
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-79 301.2 457 47.7
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 2.2e-79 300.4 459 47.5
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 2.2e-79 300.4 459 47.5
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 2.2e-79 300.4 459 47.5
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 2.9e-79 300.1 457 47.5
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 1.4e-78 297.7 452 46.9
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 3.2e-78 296.6 459 48.4
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 7.2e-78 295.4 465 43.4
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.1e-77 293.9 456 48.0
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 2.7e-77 293.5 455 47.0
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 2.7e-77 293.5 456 45.4
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 4.7e-77 292.7 471 46.5
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.0e-76 291.6 466 46.8
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 2.3e-76 290.4 463 45.6
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 3.0e-76 290.0 458 45.0
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 3.9e-76 289.7 461 46.0
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 5.1e-76 289.3 453 45.7
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 1.1e-75 288.1 395 48.9
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 1.5e-75 287.7 453 45.7
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 9.7e-75 285.0 459 44.2
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.3e-74 284.6 454 45.6
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 1.7e-74 284.3 446 45.1
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 3.7e-74 283.1 465 44.1
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 3.7e-74 283.1 458 46.9
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 3.1e-73 280.0 455 45.5
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 1.3e-71 274.6 476 44.1
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 8.8e-68 261.9 491 43.2
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.5e-67 261.2 462 44.8
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 2.6e-67 260.4 232 62.1
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.3e-66 258.1 430 44.9
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 4.5e-64 249.6 405 44.7
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.0e-63 248.4 449 42.1
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 1.3e-63 248.1 480 41.7
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 5.5e-62 242.7 455 42.4
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 5.5e-62 242.7 455 42.4
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 1.6e-61 241.1 455 42.2
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 2.2e-58 230.7 479 39.5
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.1e-57 226.5 474 38.8
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 4.7e-53 213.0 461 39.5
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.0e-52 211.8 453 39.5
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 3.4e-51 206.8 363 44.1
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 1.4e-49 201.4 457 37.0
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 5.4e-49 199.5 458 38.4
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 1.7e-47 194.5 152 67.1
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 2.2e-42 177.6 368 40.5
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 1.4e-36 158.3 483 34.6
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 3.1e-36 157.1 474 33.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 8.9e-36 155.6 456 34.2
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 3.4e-35 153.7 360 37.5
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 4.4e-35 153.3 173 53.2
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 3.4e-27 127.1 86 72.1
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 4.1e-25 120.2 99 66.7
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 5.1e-23 113.2 138 48.6
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 7.6e-19 99.4 93 63.4
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 1.3e-18 98.6 131 45.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 1.3e-18 98.6 131 45.0
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 3.7e-18 97.1 85 64.7
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 4.6e-16 90.1 81 60.5
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 2.3e-15 87.8 444 27.7
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 6.6e-15 86.3 107 51.4
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.9e-14 84.7 129 53.5
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 2.8e-13 80.9 488 25.8
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 1.1e-12 79.0 291 33.0
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 2.0e-11 74.7 88 45.5
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 4.4e-11 73.6 204 29.4
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 7.6e-11 72.8 64 56.2
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 2.2e-10 71.2 134 39.6
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 3.8e-10 70.5 134 37.3
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.3e-07 62.0 64 51.6
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 3.0e-07 60.8 79 43.0
CAN.G583.9 Capsicum annuum HOM05D002258 ORTHO05D002539 3.3e-06 57.4 124 34.7
Thecc.09G351700 Theobroma cacao HOM05D002258 ORTHO05D002539 4.3e-06 57.0 124 35.5
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 7.3e-06 56.2 124 33.1


User provided reference genes

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