Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.6e-126 454.5 224 100.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-125 453.0 224 99.6
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 3.9e-125 451.4 224 99.1
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.8e-115 418.7 223 92.8
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 9.1e-114 413.7 224 89.7
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.1e-110 402.5 225 89.3
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 5.9e-105 384.4 224 83.9
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 3.2e-103 378.6 217 84.3
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 6.1e-102 374.4 224 80.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.0e-101 373.6 216 88.0
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 6.8e-101 370.9 224 79.5
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 2.6e-100 369.0 218 82.1
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 7.5e-100 367.5 224 79.5
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.7e-99 365.2 224 77.7
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 3.7e-99 365.2 222 79.7
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 8.3e-99 364.0 224 77.2
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.4e-98 363.2 218 80.7
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.8e-98 362.8 219 79.9
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-98 362.8 222 77.9
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.8e-98 362.8 224 76.8
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 3.1e-98 362.1 224 77.7
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 7.0e-98 360.9 218 80.3
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.2e-97 360.1 219 77.2
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 2.0e-97 359.4 223 75.8
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 4.5e-97 358.2 224 78.6
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.9e-97 357.8 224 76.8
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 1.7e-96 356.3 224 77.7
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 3.8e-96 355.1 224 75.0
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.0e-96 354.8 217 77.9
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 5.0e-96 354.8 217 77.9
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.1e-95 353.6 224 74.6
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.1e-95 353.6 219 78.5
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.9e-95 352.8 224 76.8
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.5e-95 352.4 217 76.5
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 3.2e-95 352.1 225 76.0
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 5.5e-95 351.3 224 72.8
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.6e-94 349.7 224 75.9
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.1e-94 349.4 226 75.7
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.7e-94 348.2 224 74.6
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 6.1e-94 347.8 224 74.6
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 6.1e-94 347.8 217 75.1
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.8e-93 346.3 266 67.3
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 3.0e-93 345.5 217 73.7
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 4.0e-93 345.1 219 75.3
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 8.8e-93 344.0 237 70.5
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 8.8e-93 344.0 224 74.6
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 2.6e-92 342.4 261 66.3
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 2.6e-92 342.4 261 66.3
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 4.4e-92 341.7 224 74.1
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 4.4e-92 341.7 219 79.0
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 2.8e-91 339.0 224 69.2
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.8e-91 339.0 224 68.8
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.4e-90 336.7 251 68.1
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 4.1e-90 335.1 217 73.3
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.2e-89 333.6 219 71.2
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-89 333.2 218 73.9
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 3.5e-89 332.0 217 72.4
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 4.5e-89 331.6 223 72.6
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 7.7e-89 330.9 216 72.7
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.0e-88 330.5 217 71.9
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.7e-88 329.7 217 71.4
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.7e-88 329.7 215 68.8
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-88 329.3 216 74.1
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.3e-88 329.3 253 66.0
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.9e-87 326.2 217 69.6
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.5e-87 325.9 217 70.0
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.5e-87 325.9 217 70.5
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 4.3e-87 325.1 224 70.1
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 9.5e-87 323.9 217 70.5
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 3.6e-86 322.0 224 70.5
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 5.2e-85 318.2 219 67.1
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 9.8e-84 313.9 216 68.1
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.3e-83 313.5 216 68.1
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 2.2e-83 312.8 216 67.6
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 2.2e-83 312.8 216 67.6
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 3.2e-82 308.9 219 65.8
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 5.4e-82 308.1 216 67.1
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 7.0e-82 307.8 219 65.3
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.0e-82 307.8 244 64.3
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 2.0e-81 306.2 219 64.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 3.0e-80 302.4 218 64.7
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 3.9e-80 302.0 203 68.5
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 6.6e-80 301.2 216 64.4
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 8.6e-80 300.8 216 65.3
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.5e-79 300.1 216 65.3
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.3e-79 298.9 218 61.5
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.3e-79 298.9 211 66.8
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.3e-79 298.9 217 63.6
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.6e-78 296.6 211 67.3
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.8e-78 295.8 217 62.2
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-78 295.4 216 69.0
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 4.7e-78 295.0 216 64.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 8.0e-78 294.3 190 74.7
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.0e-77 293.9 216 63.9
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 1.0e-77 293.9 216 63.9
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 1.0e-77 293.9 216 63.9
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.4e-77 293.5 219 62.1
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 1.8e-77 293.1 216 65.3
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 4.0e-77 292.0 216 63.4
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.2e-76 290.4 218 60.1
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.5e-76 290.0 224 61.6
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 9.8e-76 287.3 181 76.8
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.7e-75 285.4 186 73.7
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.9e-75 285.0 217 63.1
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.4e-74 283.5 212 62.7
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.4e-74 281.6 222 64.9
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-71 273.1 214 65.0
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.6e-70 270.0 172 75.6
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.2e-68 263.8 167 77.2
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.5e-68 263.5 219 55.3
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 2.0e-68 263.1 225 53.3
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 5.8e-68 261.5 170 75.3
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.9e-67 259.2 217 59.0
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.9e-67 259.2 137 94.9
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.4e-67 258.1 165 75.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 6.4e-67 258.1 165 75.2
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.1e-66 257.3 170 70.6
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 3.2e-66 255.8 165 72.7
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 9.2e-66 254.2 228 60.5
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.0e-64 249.2 166 71.1
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 3.9e-64 248.8 142 81.7
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 5.1e-64 248.4 219 50.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 5.1e-64 248.4 163 74.2
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 8.1e-62 241.1 166 72.9
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.3e-61 239.6 127 92.9
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-61 238.8 166 71.1
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.2e-61 238.4 213 58.2
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.2e-60 237.3 186 63.4
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 9.9e-60 234.2 143 77.6
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 9.9e-60 234.2 214 48.1
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 6.4e-59 231.5 151 74.8
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 4.1e-58 228.8 211 49.8
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 2.8e-54 216.1 146 76.0
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.7e-54 215.3 144 71.5
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.0e-53 212.2 131 77.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.6e-52 209.5 212 48.1
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.1e-50 204.1 209 44.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-49 200.7 138 72.5
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.6e-49 200.3 215 44.2
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 2.1e-49 199.9 123 78.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.7e-48 196.8 140 68.6
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 2.8e-46 189.5 192 47.4
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.1e-45 187.6 219 37.4
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.8e-44 181.8 117 73.5
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 5.6e-39 165.2 101 78.2
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.3e-38 164.1 160 53.1
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.6e-38 163.7 128 67.2
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-30 137.1 91 74.7
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.4e-29 133.3 81 76.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 2.0e-28 130.2 74 82.4
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.1e-24 115.5 144 46.5
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.5e-23 113.2 131 50.4
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-20 104.4 111 53.2
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.7e-19 100.5 52 82.7
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-18 97.8 83 61.4
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 6.1e-17 92.0 52 75.0
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.4e-13 80.9 66 59.1
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 1.0e-11 74.7 103 45.6
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-09 67.8 49 65.3
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 3.0e-08 63.2 55 54.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 3.0e-08 63.2 55 54.5
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 5.1e-08 62.4 54 55.6


User provided reference genes

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