Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 3.9e-125 451.4 222 100.0
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.3e-104 383.3 223 84.8
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 1.4e-95 353.2 223 77.1
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 4.2e-95 351.7 223 75.3
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.2e-95 351.7 216 77.8
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.2e-95 351.7 216 77.8
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 9.4e-95 350.5 223 75.8
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.2e-94 350.1 224 75.4
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.6e-94 348.6 223 74.9
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 7.9e-94 347.4 223 75.3
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 7.9e-94 347.4 216 75.9
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.8e-93 346.3 216 76.9
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 5.1e-93 344.7 224 74.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 5.1e-93 344.7 223 75.3
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 1.5e-92 343.2 223 73.5
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 3.3e-92 342.0 223 72.2
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 4.3e-92 341.7 223 74.9
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 7.4e-92 340.9 219 73.5
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.2e-91 339.3 223 73.5
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 3.7e-91 338.6 216 74.5
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 4.8e-91 338.2 225 73.8
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 6.3e-91 337.8 223 74.9
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 6.3e-91 337.8 222 72.1
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 8.2e-91 337.4 217 73.7
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.8e-90 336.3 223 70.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.4e-90 335.9 224 72.3
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 2.4e-90 335.9 223 72.2
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 3.1e-90 335.5 223 71.7
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 3.1e-90 335.5 223 74.4
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 6.9e-90 334.3 217 72.8
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 9.1e-90 334.0 222 72.1
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 4.5e-89 331.6 223 70.0
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 4.5e-89 331.6 223 70.4
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 8.5e-88 327.4 217 70.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 4.2e-87 325.1 224 71.4
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.2e-87 325.1 224 71.0
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 5.5e-87 324.7 238 68.1
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.4e-87 323.9 224 70.5
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 9.4e-87 323.9 223 70.0
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 1.2e-86 323.6 224 70.5
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.6e-86 323.2 217 71.0
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-86 323.2 260 62.7
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 1.6e-86 323.2 260 62.7
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 2.1e-86 322.8 217 71.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 2.7e-86 322.4 212 70.8
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 4.7e-86 321.6 251 65.7
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 4.7e-86 321.6 223 68.6
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 7.9e-86 320.9 217 71.0
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 3.0e-85 318.9 223 68.2
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.1e-84 317.0 217 69.6
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 2.6e-84 315.8 218 70.6
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 4.4e-84 315.1 223 67.7
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.4e-84 314.3 217 68.7
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 7.4e-84 314.3 217 69.1
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.3e-83 313.5 223 68.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.7e-83 313.2 223 67.7
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.7e-83 313.2 223 67.7
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.7e-83 313.2 217 68.2
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.7e-83 313.2 215 68.8
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.7e-83 313.2 216 67.6
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 2.8e-83 312.4 216 69.0
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.7e-83 312.0 224 69.2
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.8e-83 311.6 224 69.6
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 6.3e-83 311.2 223 69.1
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 6.3e-83 311.2 265 59.2
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.4e-82 310.1 223 67.3
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.3e-82 308.1 218 67.9
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 7.0e-82 307.8 215 69.3
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 9.1e-82 307.4 215 67.9
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.7e-81 304.3 243 64.2
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.0e-80 303.9 216 65.3
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.7e-80 303.1 200 72.5
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 6.5e-80 301.2 218 64.2
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 8.5e-80 300.8 218 64.7
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 3.2e-79 298.9 218 66.5
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 3.2e-79 298.9 217 65.9
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 5.5e-79 298.1 216 64.4
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 9.4e-79 297.4 218 66.5
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 9.4e-79 297.4 217 65.9
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.2e-78 297.0 215 65.6
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.6e-78 296.6 216 65.3
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 2.1e-78 296.2 223 65.9
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.1e-78 296.2 212 69.3
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-78 295.4 221 60.6
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 4.7e-78 295.0 217 63.1
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.1e-78 294.7 215 64.2
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 6.1e-78 294.7 215 64.2
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 6.1e-78 294.7 215 64.2
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.3e-77 292.7 252 59.9
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.0e-77 292.4 216 63.0
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 3.0e-77 292.4 215 64.2
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 8.8e-77 290.8 215 63.7
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 4.4e-76 288.5 217 60.8
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 3.7e-75 285.4 215 62.8
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.5e-73 278.9 218 60.6
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 3.5e-73 278.9 220 60.0
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.8e-72 275.4 216 61.6
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 1.1e-71 273.9 218 58.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-71 273.9 215 62.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 7.2e-71 271.2 217 61.3
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 3.6e-70 268.9 217 62.7
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 8.8e-69 264.2 225 55.1
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 3.4e-68 262.3 170 75.3
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.7e-67 258.8 180 68.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 2.4e-66 256.1 219 54.8
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 4.1e-66 255.4 213 52.6
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 1.2e-65 253.8 217 56.7
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.0e-64 250.8 222 57.7
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 1.7e-64 250.0 171 71.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 5.5e-63 245.0 165 70.9
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 8.0e-62 241.1 166 69.9
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 8.0e-62 241.1 166 69.9
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.8e-61 240.0 187 61.0
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 3.0e-61 239.2 164 68.9
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.8e-61 238.0 215 56.3
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 2.2e-59 233.0 213 49.3
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.1e-58 229.2 209 56.0
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.2e-58 227.6 221 53.8
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.2e-58 227.6 185 59.5
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.2e-57 227.3 184 61.4
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.7e-56 223.4 210 49.0
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.5e-55 219.5 141 73.0
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.8e-54 216.1 169 62.1
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 8.9e-53 211.1 208 47.6
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.6e-52 209.5 213 50.2
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.3e-51 207.2 171 60.8
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 1.7e-51 206.8 142 69.7
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.9e-51 206.1 164 61.6
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 8.3e-51 204.5 141 69.5
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 7.0e-50 201.4 165 58.8
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 4.6e-49 198.7 214 46.3
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 2.3e-48 196.4 127 76.4
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 6.6e-48 194.9 191 47.6
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.9e-47 193.4 151 63.6
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 3.6e-46 189.1 220 41.4
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-46 189.1 163 58.9
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 6.8e-45 184.9 215 45.6
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.8e-44 181.0 143 61.5
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-42 177.2 131 65.6
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 3.2e-42 176.0 144 60.4
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.0e-40 171.0 123 68.3
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 3.0e-40 169.5 128 68.0
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.1e-37 161.0 136 59.6
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-37 160.6 133 58.6
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-37 159.1 114 68.4
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 6.8e-37 158.3 159 49.7
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 3.5e-33 146.0 101 70.3
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 3.6e-22 109.4 90 63.3
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 8.1e-22 108.2 81 64.2
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 1.2e-20 104.4 75 65.3
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 7.6e-20 101.7 83 63.9
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.1e-18 95.1 143 38.5
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.9e-15 87.0 68 60.3
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.6e-15 85.5 52 71.2
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.8e-14 83.2 66 56.1
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-13 80.5 110 43.6
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 4.0e-13 79.3 52 67.3
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 2.4e-10 70.1 163 27.0
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 1.8e-08 63.9 55 61.8
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 1.8e-08 63.9 55 61.8
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 3.0e-08 63.2 54 63.0


User provided reference genes

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