Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 8.8e-65 250.8 167 100.0
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 5.2e-57 224.9 168 91.1
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.0e-56 223.0 139 87.8
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.6e-56 222.6 173 88.4
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 9.7e-56 220.7 168 79.8
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 2.2e-55 219.5 141 92.9
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 2.8e-55 219.2 143 93.0
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 3.7e-55 218.8 169 90.5
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 4.8e-55 218.4 144 91.0
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 4.8e-55 218.4 168 86.9
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 8.2e-55 217.6 139 91.4
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 8.2e-55 217.6 139 91.4
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.4e-54 216.9 139 90.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.4e-54 216.9 139 90.6
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.1e-54 215.7 139 90.6
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.1e-54 215.3 139 89.9
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 4.1e-54 215.3 169 87.0
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 5.3e-54 214.9 168 80.4
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.3e-54 214.9 171 82.5
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 5.3e-54 214.9 153 86.9
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 7.0e-54 214.5 168 88.1
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 9.1e-54 214.2 149 83.2
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.6e-53 213.4 140 90.0
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 2.0e-53 213.0 170 84.7
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 2.0e-53 213.0 146 84.9
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 3.5e-53 212.2 140 87.9
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.5e-53 212.2 140 90.0
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.5e-53 212.2 140 90.0
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.9e-53 211.5 142 81.7
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 5.9e-53 211.5 142 84.5
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 5.9e-53 211.5 142 84.5
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 7.7e-53 211.1 168 79.8
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.0e-52 210.7 170 84.1
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.0e-52 210.7 140 82.1
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.3e-52 210.3 142 83.8
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.7e-52 209.9 142 87.3
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-52 209.9 140 89.3
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.2e-52 209.5 145 87.6
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.2e-52 209.5 142 89.4
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 2.2e-52 209.5 170 86.5
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.2e-52 209.5 142 90.8
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 2.2e-52 209.5 142 88.0
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 2.9e-52 209.1 171 83.6
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 2.9e-52 209.1 142 76.8
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.9e-52 209.1 157 84.1
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.8e-52 208.8 137 86.9
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 3.8e-52 208.8 149 84.6
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 3.8e-52 208.8 139 84.9
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.8e-52 208.8 170 87.1
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 6.5e-52 208.0 168 79.8
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 6.5e-52 208.0 174 83.3
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 6.5e-52 208.0 145 86.2
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 8.5e-52 207.6 145 87.6
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.1e-51 207.2 179 79.9
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.1e-51 207.2 139 77.7
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.5e-51 206.8 142 85.9
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.5e-51 206.8 169 78.7
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.9e-51 206.5 148 85.8
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.9e-51 206.5 141 88.7
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 2.5e-51 206.1 176 82.4
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 3.2e-51 205.7 142 86.6
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.2e-51 205.7 147 82.3
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 4.2e-51 205.3 173 76.3
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 5.5e-51 204.9 146 87.0
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 5.5e-51 204.9 140 76.4
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 5.5e-51 204.9 145 86.2
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 5.5e-51 204.9 143 86.7
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 5.5e-51 204.9 146 85.6
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 9.4e-51 204.1 130 86.9
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 9.4e-51 204.1 148 79.7
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 9.4e-51 204.1 141 83.0
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-50 203.8 148 81.8
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-50 203.8 148 81.8
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.2e-50 203.8 144 88.2
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.6e-50 203.4 157 79.0
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.6e-50 203.4 145 80.0
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.6e-50 203.4 146 87.7
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.1e-50 203.0 145 87.6
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.1e-50 203.0 145 87.6
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 2.1e-50 203.0 148 83.8
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 2.7e-50 202.6 140 84.3
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.7e-50 202.6 145 85.5
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 3.6e-50 202.2 146 83.6
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 4.7e-50 201.8 152 83.6
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 4.7e-50 201.8 149 79.2
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 4.7e-50 201.8 145 84.8
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.7e-50 201.8 148 81.1
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 6.1e-50 201.4 184 76.1
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 8.0e-50 201.1 171 77.8
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 8.0e-50 201.1 178 75.3
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 8.0e-50 201.1 140 87.1
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 8.0e-50 201.1 150 81.3
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 8.0e-50 201.1 169 78.1
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 1.0e-49 200.7 148 80.4
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.0e-49 200.7 176 76.7
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.4e-49 200.3 144 81.9
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-49 200.3 144 81.9
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-49 200.3 151 83.4
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.8e-49 199.9 169 82.8
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.3e-49 199.5 153 83.7
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.3e-49 199.5 149 85.2
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 3.0e-49 199.1 142 76.1
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 4.0e-49 198.7 141 87.9
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.0e-49 198.7 153 83.7
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 4.0e-49 198.7 143 80.4
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 4.0e-49 198.7 143 80.4
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 4.0e-49 198.7 143 80.4
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 4.0e-49 198.7 173 84.4
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 6.8e-49 198.0 141 85.1
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 6.8e-49 198.0 176 81.8
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 8.8e-49 197.6 144 77.8
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-48 197.2 151 82.8
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-48 197.2 151 82.8
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.2e-48 197.2 151 82.8
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.2e-48 197.2 142 79.6
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-48 196.8 144 81.2
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 4.4e-48 195.3 149 77.9
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 5.7e-48 194.9 141 85.8
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 7.5e-48 194.5 145 78.6
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 9.7e-48 194.1 144 76.4
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.7e-47 193.4 144 79.2
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.7e-47 193.4 151 80.1
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.7e-47 193.4 156 77.6
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 2.8e-47 192.6 180 80.0
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.7e-47 192.2 146 77.4
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 3.7e-47 192.2 139 88.5
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 3.7e-47 192.2 139 88.5
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 6.3e-47 191.4 103 86.4
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 8.3e-47 191.0 148 77.7
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 8.3e-47 191.0 170 82.4
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 8.3e-47 191.0 178 69.1
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 4.1e-46 188.7 142 80.3
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 5.3e-46 188.3 146 79.5
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 5.9e-45 184.9 148 76.4
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 7.7e-45 184.5 103 80.6
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 7.7e-45 184.5 143 79.7
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.0e-44 184.1 91 94.5
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.8e-44 182.2 148 77.0
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 6.5e-44 181.4 140 80.0
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.1e-43 180.6 145 73.1
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.5e-43 179.5 105 78.1
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 5.5e-43 178.3 147 77.6
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.1e-42 176.4 142 77.5
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 1.4e-41 173.7 87 93.1
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 6.8e-41 171.4 113 89.4
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.0e-40 169.9 89 88.8
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 5.7e-40 168.3 148 73.6
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.8e-39 166.0 89 86.5
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 3.5e-37 159.1 81 87.7
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.1e-34 149.8 94 69.1
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 1.8e-33 146.7 127 63.0
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 5.2e-33 145.2 169 69.8
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 8.3e-31 137.9 80 77.5
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 1.0e-28 131.0 100 69.0
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 5.6e-27 125.2 60 96.7
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 2.8e-26 122.9 76 69.7
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.7e-23 113.6 57 94.7
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 2.2e-23 113.2 93 61.3
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 3.0e-20 102.8 94 50.0
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 3.3e-19 99.4 133 51.1
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.1e-18 96.7 49 85.7
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 4.7e-18 95.5 103 53.4
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.8e-17 93.6 103 52.4
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 5.1e-12 75.5 43 81.4
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.9e-11 73.6 79 54.4
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 5.6e-11 72.0 79 54.4
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 5.6e-11 72.0 79 54.4
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 4.7e-10 68.9 79 53.2
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 4.7e-10 68.9 79 53.2
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 4.7e-10 68.9 79 53.2
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-09 67.4 145 49.7
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.9e-06 57.0 35 71.4


User provided reference genes

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