Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 6.8e-125 450.7 226 100.0
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 6.4e-83 311.2 232 71.6
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 4.2e-82 308.5 232 70.3
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.1e-81 306.2 232 70.3
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.7e-81 305.8 233 69.1
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 7.8e-81 304.3 236 69.9
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.0e-80 303.9 232 69.8
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.0e-80 303.9 230 70.4
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 1.0e-80 303.9 234 69.7
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.7e-80 303.1 232 68.5
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 3.0e-80 302.4 230 67.4
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.0e-80 302.4 233 68.7
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 3.9e-80 302.0 226 70.4
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 5.1e-80 301.6 233 67.4
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 8.7e-80 300.8 232 67.7
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.5e-79 299.3 232 68.1
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 2.5e-79 299.3 232 68.1
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 9.6e-79 297.4 235 66.8
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 3.6e-78 295.4 232 68.5
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 6.2e-78 294.7 235 66.8
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.4e-77 293.5 226 68.1
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.4e-77 293.5 235 66.0
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 2.4e-77 292.7 231 66.2
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.4e-77 292.7 232 66.8
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.1e-77 292.4 230 67.0
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.0e-77 292.0 230 66.5
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 4.0e-77 292.0 232 65.5
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 5.3e-77 291.6 228 67.5
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 6.9e-77 291.2 226 67.3
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 6.9e-77 291.2 232 66.8
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 9.0e-77 290.8 230 66.1
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 9.0e-77 290.8 230 66.1
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.5e-76 290.0 232 67.2
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.0e-76 289.7 230 66.5
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.0e-76 289.7 232 66.8
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.4e-76 288.5 232 66.4
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 4.4e-76 288.5 226 68.1
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 7.6e-76 287.7 229 65.9
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 9.9e-76 287.3 226 66.8
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 1.7e-75 286.6 228 65.4
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 6.4e-75 284.6 235 64.3
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 6.4e-75 284.6 227 67.4
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 8.4e-75 284.3 235 63.8
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.4e-74 283.5 226 67.3
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 1.9e-74 283.1 234 64.5
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 3.2e-74 282.3 205 72.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 7.1e-74 281.2 206 68.9
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.6e-73 280.0 232 63.4
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 7.9e-73 277.7 229 64.6
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 7.9e-73 277.7 234 63.2
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 1.3e-72 276.9 228 62.7
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.3e-72 276.9 226 64.6
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.7e-72 276.6 226 63.3
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 2.3e-72 276.2 234 65.4
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.3e-72 276.2 237 64.1
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 8.7e-72 274.2 228 64.9
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 8.7e-72 274.2 237 63.7
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 2.8e-70 269.2 200 66.5
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 4.8e-70 268.5 234 61.1
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 8.1e-70 267.7 233 61.4
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.4e-69 266.9 233 60.1
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.8e-69 266.5 209 67.9
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 5.3e-69 265.0 228 62.3
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 5.3e-69 265.0 235 63.0
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 2.6e-68 262.7 236 58.9
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 2.6e-68 262.7 232 62.9
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 4.5e-68 261.9 227 61.7
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 4.9e-67 258.5 235 57.9
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 6.4e-67 258.1 235 58.3
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 8.4e-67 257.7 232 61.6
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 1.1e-66 257.3 236 58.1
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 1.4e-66 256.9 235 57.0
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.4e-66 256.9 235 57.4
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.9e-66 256.5 231 61.9
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.9e-66 256.5 216 63.9
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 5.5e-66 255.0 235 60.4
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 7.1e-66 254.6 235 57.0
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 3.5e-65 252.3 205 60.5
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 6.0e-65 251.5 231 58.9
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.0e-64 250.8 264 53.8
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 5.1e-64 248.4 273 52.7
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.1e-61 240.7 209 62.7
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.1e-61 240.7 197 61.4
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.5e-60 236.9 189 65.6
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 1.5e-60 236.9 219 57.5
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 5.8e-60 235.0 184 66.3
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 5.8e-60 235.0 228 55.7
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.0e-59 234.2 131 84.0
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.6e-57 226.9 230 57.4
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.6e-57 226.9 234 57.3
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.7e-57 226.1 214 57.5
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 7.9e-57 224.6 262 51.5
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.8e-56 223.4 219 56.6
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 5.1e-56 221.9 228 55.3
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.5e-55 219.5 226 57.5
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.8e-54 216.1 230 54.3
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.8e-54 216.1 232 53.9
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 3.1e-53 212.6 231 52.4
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 4.5e-52 208.8 122 80.3
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 1.3e-51 207.2 207 57.0
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 6.5e-51 204.9 194 55.7
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 5.5e-50 201.8 180 64.4
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 5.1e-48 195.3 223 53.4
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.1e-47 194.1 182 58.2
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.1e-47 194.1 205 53.2
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.9e-47 193.4 228 50.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.3e-46 190.7 96 88.5
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.6e-46 190.3 180 60.6
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.5e-44 183.7 148 58.1
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 2.0e-44 183.3 254 46.5
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.3e-43 180.6 209 49.3
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 7.2e-42 174.9 219 46.1
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 2.1e-41 173.3 179 58.1
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 4.6e-41 172.2 252 44.0
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 1.3e-38 164.1 165 58.8
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.8e-37 160.2 182 53.3
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.7e-35 153.7 150 55.3
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 3.9e-32 142.5 104 70.2
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 6.1e-25 118.6 70 80.0
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.0e-24 117.9 173 45.1
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 1.4e-24 117.5 176 44.3
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.0e-23 113.6 57 86.0
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 2.7e-20 103.2 67 65.7
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 1.6e-17 94.0 49 83.7
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 2.3e-16 90.1 50 76.0
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 4.0e-16 89.4 69 58.0
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.3e-14 84.3 56 69.6
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 4.8e-14 82.4 58 70.7
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 8.3e-14 81.6 102 46.1
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.0e-12 77.0 48 77.1
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.7e-12 76.6 72 58.3
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.9e-12 75.5 84 53.6
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.9e-12 75.5 48 75.0
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.7e-11 73.9 78 55.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.5e-10 70.1 43 76.7
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.5e-10 68.9 43 76.7
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 1.4e-08 64.3 42 73.8
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 4.0e-08 62.8 29 96.6
Gohir.A07G086801 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.2e-07 61.2 77 46.8
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.0e-07 60.5 77 45.5


User provided reference genes

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