Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 0.0e+00 1092.0 557 100.0
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 2.2e-201 706.1 625 58.7
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 1.3e-196 690.3 620 57.7
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 1.1e-195 687.2 625 56.8
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 4.2e-192 675.2 584 58.9
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 2.1e-191 672.9 621 55.6
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 1.3e-190 670.2 613 57.7
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 3.9e-190 668.7 619 59.1
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 2.5e-189 666.0 637 54.0
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 5.6e-189 664.8 641 57.3
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 2.1e-188 662.9 612 58.3
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 1.1e-187 660.6 629 56.0
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 5.3e-187 658.3 641 56.9
Sabra07G0049300 Salix brachista HOM05D005767 ORTHO05D006785 5.3e-187 658.3 649 53.0
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 6.9e-187 657.9 638 54.7
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 1.3e-185 653.7 620 55.0
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 2.2e-185 652.9 625 54.7
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 1.9e-184 649.8 611 56.0
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 7.1e-184 647.9 711 50.5
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 3.5e-183 645.6 605 56.2
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 1.3e-182 643.7 600 55.7
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 5.6e-181 638.3 606 55.3
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 9.6e-181 637.5 626 55.0
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 1.6e-180 636.7 622 53.7
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 3.7e-180 635.6 606 55.1
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 4.8e-180 635.2 617 55.3
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 1.1e-179 634.0 599 55.4
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 9.0e-179 630.9 589 55.3
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 9.0e-179 630.9 608 54.3
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.5e-178 630.2 627 53.4
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 1.5e-178 630.2 614 54.6
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 2.6e-178 629.4 626 54.5
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 7.6e-178 627.9 615 53.0
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 1.0e-177 627.5 617 54.8
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 8.4e-177 624.4 614 54.9
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 1.1e-176 624.0 619 53.2
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 1.1e-176 624.0 630 51.7
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 1.9e-176 623.2 595 54.8
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 4.2e-176 622.1 614 52.8
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 7.1e-176 621.3 615 54.8
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 2.1e-175 619.8 614 53.9
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 1.0e-174 617.5 587 54.5
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 1.3e-174 617.1 619 55.6
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 3.0e-174 615.9 614 55.0
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 8.7e-174 614.4 612 56.2
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 3.3e-173 612.5 673 49.3
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 6.3e-172 608.2 604 53.3
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 1.1e-171 607.4 602 53.3
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 1.8e-171 606.7 606 51.5
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 3.1e-171 605.9 616 52.4
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 6.9e-171 604.7 613 52.5
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 9.0e-171 604.4 594 54.5
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 7.6e-170 601.3 599 53.3
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 2.2e-169 599.7 605 54.0
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 3.2e-168 595.9 605 53.2
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 5.5e-168 595.1 591 52.5
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 7.2e-168 594.7 623 53.3
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 9.3e-168 594.3 596 52.0
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 1.8e-166 590.1 627 52.3
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 1.1e-165 587.4 594 51.2
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 2.5e-165 586.3 607 52.1
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 7.4e-165 584.7 623 51.0
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 4.8e-164 582.0 625 50.2
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 4.1e-163 578.9 590 52.4
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 1.7e-161 573.5 594 50.8
vmacro22135 Vaccinium macrocarpon HOM05D005767 ORTHO05D006785 3.8e-161 572.4 613 51.2
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 1.9e-160 570.1 595 51.1
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 4.2e-160 568.9 584 51.9
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 3.6e-159 565.8 626 52.7
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 1.1e-157 560.8 572 55.1
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 5.7e-157 558.5 582 52.6
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 2.4e-155 553.1 571 52.4
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 3.1e-155 552.7 393 69.0
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 5.5e-152 542.0 546 54.6
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 9.4e-152 541.2 490 56.3
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 3.6e-151 539.3 551 51.7
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.0e-150 537.7 592 50.7
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 3.0e-150 536.2 613 48.9
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 5.1e-150 535.4 634 46.8
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 3.5e-146 522.7 588 47.8
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 5.9e-138 495.4 624 44.6
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 1.4e-134 484.2 428 57.9
unitig_32.g10945 Utricularia gibba HOM05D005767 ORTHO05D006785 4.0e-134 482.6 586 46.6
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 2.4e-131 473.4 558 45.9
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 4.4e-125 452.6 539 45.8
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 7.7e-122 441.8 651 40.1
Oeu035312.2 Olea europaea HOM05D005767 ORTHO05D006785 1.6e-119 434.1 433 50.6
Pp3c17_13320 Physcomitrium patens HOM05D005767 ORTHO05D006785 3.4e-117 426.4 627 38.8
Eucgr.I02343 Eucalyptus grandis HOM05D005767 ORTHO05D006785 1.7e-116 424.1 392 56.1
Actinidia22973 Actinidia chinensis HOM05D005767 ORTHO05D006785 2.2e-116 423.7 620 42.3
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 3.5e-114 416.4 579 46.1
Hma1.2p1_1115F.1_g258820 Hydrangea macrophylla HOM05D005767 ORTHO05D006785 9.8e-101 371.7 284 62.0
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 1.0e-89 335.1 251 65.7
Lalb_Chr05g0229851 Lupinus albus HOM05D005767 ORTHO05D006785 2.4e-83 313.9 384 46.4
AagrBONN_evm.TU.Sc2ySwM_344.3375 Anthoceros agrestis HOM05D005767 ORTHO05D006785 1.5e-72 278.1 455 39.3
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 9.6e-72 275.4 207 65.2
CBR_g18710 Chara braunii HOM05D005767 ORTHO05D006785 5.3e-54 216.5 256 44.9
SMO290G0007 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 7.6e-53 212.6 228 46.5
Glyma.16G128500 Glycine max HOM05D005767 ORTHO05D006785 4.3e-48 196.8 191 56.5
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 5.3e-46 189.9 160 60.6
SEGI_12703 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 6.1e-42 176.4 158 50.6
MCO08G331 Micromonas commoda HOM05D005767 ORTHO05D006785 5.1e-41 173.3 576 27.1
Potri.005G113301 Populus trichocarpa HOM05D005767 ORTHO05D006785 4.4e-40 170.2 196 44.4
SMO356G0427 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.5e-37 161.8 399 28.8
CARHR244450 Cardamine hirsuta HOM05D005767 ORTHO05D006785 1.3e-36 158.7 271 45.8
Lsat_1_v5_gn_9_7060 Lactuca sativa HOM05D005767 ORTHO05D006785 6.7e-33 146.4 184 44.6
Cre12.g532750 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 9.7e-32 142.5 280 34.3
AagrBONN_evm.TU.Sc2ySwM_117.1514 Anthoceros agrestis HOM05D005767 ORTHO05D006785 7.0e-30 136.3 350 28.0
GSVIVG01018775001 Vitis vinifera HOM05D005767 ORTHO05D006785 1.3e-28 132.1 79 69.6
Sc16g0002220 Simmondsia chinensis HOM05D005767 ORTHO05D006785 1.0e-25 122.5 73 79.5
Cfa024213 Carpinus fangiana HOM05D005767 ORTHO05D006785 6.7e-25 119.8 293 30.7
arahy.Tifrunner.gnm1.ann1.S1GY7D Arachis hypogaea HOM05D005767 ORTHO05D006785 6.3e-23 113.2 174 37.9
SMO356G0296 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 6.3e-23 113.2 325 30.2
MBI09_g45348_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 3.1e-22 110.9 132 46.2
Psat7g239040 Pisum sativum HOM05D005767 ORTHO05D006785 3.1e-22 110.9 81 64.2
MD15G1244800 Malus domestica HOM05D005767 ORTHO05D006785 7.0e-22 109.8 241 36.1
MD15G1245100 Malus domestica HOM05D005767 ORTHO05D006785 2.7e-21 107.8 74 75.7
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 1.0e-20 105.9 331 25.4
SMO290G0017 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 1.3e-20 105.5 234 32.9
Eucgr.I02344 Eucalyptus grandis HOM05D005767 ORTHO05D006785 6.5e-20 103.2 217 35.9
Manes.09G016000 Manihot esculenta HOM05D005620 ORTHO05D002193 1.6e-18 98.6 266 29.7
Cre12.g534151 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 2.7e-18 97.8 298 27.5
CSS0011392 Camellia sinensis var. sinensis HOM05D005620 ORTHO05D002193 1.4e-17 95.5 268 28.4
CBR_g48654 Chara braunii HOM05D005767 ORTHO05D006785 1.4e-17 95.5 181 30.4
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 2.3e-17 94.7 268 28.4
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 4.0e-17 94.0 273 28.6
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 4.0e-17 94.0 273 28.6
MD15G1244900 Malus domestica HOM05D005767 ORTHO05D006785 4.0e-17 94.0 88 51.1
SMO145G0259 Selaginella moellendorffii HOM05D005620 ORTHO05D002193 5.2e-17 93.6 318 26.7
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 6.8e-17 93.2 273 28.6
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 8.8e-17 92.8 273 28.6
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 8.8e-17 92.8 273 28.6
MELO3C009829.2 Cucumis melo HOM05D005620 ORTHO05D002193 1.2e-16 92.4 252 29.0
Sed0006254 Sechium edule HOM05D005620 ORTHO05D002193 2.0e-16 91.7 266 27.8
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 3.4e-16 90.9 265 27.2
Sc19g0008380 Simmondsia chinensis HOM05D005620 ORTHO05D002193 4.4e-16 90.5 253 28.1
Medtr1g051380 Medicago truncatula HOM05D005620 ORTHO05D002193 5.7e-16 90.1 266 27.4
TWI53G0502 Tripterygium wilfordii HOM05D005620 ORTHO05D002193 5.7e-16 90.1 266 28.2
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 7.5e-16 89.7 273 26.7
CANSAT80G0060 Cannabis sativa HOM05D005620 ORTHO05D002193 9.8e-16 89.4 266 28.2
CANSAT80G0759 Cannabis sativa HOM05D005620 ORTHO05D002193 9.8e-16 89.4 266 28.2
SEGI_01145 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.3e-15 89.0 86 52.3
Actinidia09295 Actinidia chinensis HOM05D005620 ORTHO05D002193 1.7e-15 88.6 272 29.0
EL10Ac3g07159 Beta vulgaris HOM05D005620 ORTHO05D002193 1.7e-15 88.6 273 27.1
Sabra16G0047700 Salix brachista HOM05D005620 ORTHO05D002193 1.7e-15 88.6 269 27.5
Cre07.g350550 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 2.2e-15 88.2 271 26.6
ClCG10G015520 Citrullus lanatus HOM05D005620 ORTHO05D002193 2.8e-15 87.8 277 27.4
Lsat_1_v5_gn_9_32000 Lactuca sativa HOM05D005620 ORTHO05D002193 4.8e-15 87.0 266 27.8
GSVIVG01033553001 Vitis vinifera HOM05D005620 ORTHO05D002193 6.3e-15 86.7 262 27.9
HanXRQChr10g0298661 Helianthus annuus HOM05D005620 ORTHO05D002193 8.3e-15 86.3 266 28.9
Phvul.007G249300 Phaseolus vulgaris HOM05D005620 ORTHO05D002193 8.3e-15 86.3 274 28.1
ECA247G2062 Erigeron canadensis HOM05D005620 ORTHO05D002193 1.4e-14 85.5 268 27.6
Lalb_Chr02g0156421 Lupinus albus HOM05D005620 ORTHO05D002193 2.4e-14 84.7 267 28.1
Os01g0801100 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 5.4e-14 83.6 272 26.8
Os01g0801000 Oryza sativa ssp. japonica HOM05D005620 ORTHO05D002193 7.0e-14 83.2 268 28.0
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 2.0e-13 81.6 269 27.5
Sc13g0001490 Simmondsia chinensis HOM05D005620 ORTHO05D002193 2.0e-13 81.6 269 26.8
Sopen04g008610 Solanum pennellii HOM05D005620 ORTHO05D002193 1.0e-12 79.3 260 26.2
SEGI_27797 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.3e-12 79.0 55 58.2
Solyc04g016530.3 Solanum lycopersicum HOM05D005620 ORTHO05D002193 1.7e-12 78.6 261 25.7
PRCOL_00006578 Prasinoderma coloniale HOM05D005620 ORTHO05D002193 1.9e-11 75.1 270 25.6
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 5.5e-11 73.6 248 26.2
arahy.Tifrunner.gnm1.ann1.JHI6E6 Arachis hypogaea HOM05D005767 ORTHO05D006785 9.5e-11 72.8 40 75.0
arahy.Tifrunner.gnm1.ann1.R2J7CI Arachis hypogaea HOM05D005767 ORTHO05D006785 4.7e-10 70.5 41 70.7
Eucgr.I02345 Eucalyptus grandis HOM05D005767 ORTHO05D006785 6.8e-09 66.6 36 83.3
SMO356G0207 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 1.3e-07 62.4 54 53.7
SEGI_05705 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.7e-07 62.0 84 38.1
MBI09_g09411_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 2.2e-07 61.6 48 64.6
MCO06G208 Micromonas commoda HOM05D005767 ORTHO05D006785 6.3e-07 60.1 61 44.3
Potri.005G113250 Populus trichocarpa HOM05D005767 ORTHO05D006785 7.0e-06 56.6 32 71.9


User provided reference genes

Program Settings