Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 6.9e-298 1026.5 525 100.0
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 6.1e-153 545.0 541 56.4
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 2.3e-152 543.1 579 53.0
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 7.5e-151 538.1 537 57.0
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 5.9e-148 528.5 535 56.3
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 1.5e-146 523.9 534 55.1
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 1.9e-146 523.5 599 50.6
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 1.6e-145 520.4 541 54.9
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 6.1e-145 518.5 544 53.1
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 1.5e-143 513.8 539 55.3
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.1e-141 507.7 539 54.5
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 1.3e-139 500.7 574 48.8
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 1.7e-139 500.4 568 51.6
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 2.3e-139 500.0 555 50.6
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 1.1e-138 497.7 538 50.6
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 2.5e-138 496.5 578 51.4
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 3.3e-138 496.1 555 50.6
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 9.5e-138 494.6 538 53.5
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 1.2e-137 494.2 534 52.4
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 1.6e-137 493.8 714 45.0
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 2.8e-137 493.0 535 52.0
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.0e-136 491.1 557 49.4
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 3.1e-136 489.6 552 50.2
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 2.6e-135 486.5 569 51.3
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 9.8e-135 484.6 579 48.0
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 2.9e-134 483.0 540 51.9
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 3.7e-134 482.6 537 50.7
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 6.4e-134 481.9 564 48.8
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 1.6e-132 477.2 545 49.9
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 2.0e-132 476.9 545 48.6
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 3.5e-132 476.1 553 48.8
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 1.7e-131 473.8 545 49.9
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 3.0e-131 473.0 539 49.5
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 3.0e-131 473.0 566 49.1
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 1.1e-130 471.1 553 48.3
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 2.5e-130 469.9 548 48.5
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 9.5e-130 468.0 549 48.3
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 1.6e-129 467.2 581 48.2
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.7e-129 465.7 577 49.0
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 1.2e-127 461.1 579 46.6
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 2.6e-127 459.9 568 49.1
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 9.2e-125 451.4 569 46.0
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.2e-124 451.1 580 47.4
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 3.5e-124 449.5 521 50.3
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 4.6e-124 449.1 569 46.2
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.7e-123 447.2 587 47.2
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 1.7e-123 447.2 549 48.5
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 1.1e-122 444.5 539 48.1
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 1.9e-122 443.7 549 48.1
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 2.5e-122 443.4 571 45.7
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 1.6e-121 440.7 540 48.5
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 3.6e-121 439.5 606 43.6
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 4.4e-119 432.6 539 48.1
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 6.4e-118 428.7 549 45.7
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 8.4e-118 428.3 544 46.3
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 1.4e-117 427.6 528 46.6
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 4.1e-117 426.0 550 46.4
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 5.4e-117 425.6 552 45.3
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 2.1e-116 423.7 570 46.5
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 7.8e-116 421.8 592 44.1
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 1.9e-114 417.2 549 45.2
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.2e-113 414.5 533 47.3
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 1.1e-112 411.4 540 46.1
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 6.9e-112 408.7 553 46.1
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 1.5e-111 407.5 552 45.5
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 1.3e-110 404.4 536 43.8
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 1.7e-110 404.1 531 46.0
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 2.2e-110 403.7 524 47.1
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 6.4e-110 402.1 680 39.7
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 1.4e-109 401.0 541 44.4
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 2.7e-108 396.7 548 44.0
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 3.5e-108 396.4 542 45.6
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 6.0e-108 395.6 550 44.0
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 1.0e-107 394.8 450 50.7
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 1.9e-106 390.6 549 43.5
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 3.4e-103 379.8 471 49.3
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 3.8e-102 376.3 531 43.1
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 3.2e-101 373.2 512 45.3
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 6.0e-100 369.0 532 42.9
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 5.1e-99 365.9 563 42.1
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 4.0e-96 356.3 496 43.8
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 9.0e-96 355.1 557 38.2
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 7.6e-95 352.1 473 45.2
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 3.8e-94 349.7 581 40.1
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 1.2e-92 344.7 535 40.7
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 5.6e-90 335.9 492 43.3
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 4.5e-87 326.2 454 42.1
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 1.7e-86 324.3 557 38.4
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.9e-86 323.6 483 42.7
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 1.2e-79 301.6 331 48.6
Cpa.g.sc108.22 Carica papaya HOM05D006560 ORTHO05D008164 1.3e-78 298.1 437 43.9
Migut.L00953 Erythranthe guttata HOM05D006560 ORTHO05D008164 8.5e-78 295.4 442 43.0
Hma1.2p1_0085F.1_g043970 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.8e-75 287.7 396 45.5
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 1.2e-71 275.0 502 38.4
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 4.5e-71 273.1 592 34.1
CDE04G3361 Ceratophyllum demersum HOM05D006560 ORTHO05D008164 1.0e-70 271.9 395 43.5
Migut.L00936 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.2e-68 265.0 421 41.3
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 3.1e-64 250.4 422 39.3
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 4.1e-64 250.0 208 61.1
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 2.7e-60 237.3 532 33.5
Sopen02g026150 Solanum pennellii HOM05D006560 ORTHO05D008164 2.9e-54 217.2 355 41.4
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 3.6e-52 210.3 192 55.7
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 5.2e-51 206.5 471 34.6
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 5.0e-46 189.9 211 49.8
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 9.4e-45 185.7 148 61.5
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 2.1e-44 184.5 148 61.5
Ciclev10013450m.g Citrus clementina HOM05D006560 ORTHO05D008164 4.1e-40 170.2 317 38.2
CSS0034206 Camellia sinensis var. sinensis HOM05D006560 ORTHO05D008164 7.7e-39 166.0 214 50.0
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 1.7e-38 164.9 138 60.9
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 2.8e-36 157.5 574 26.3
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 5.2e-35 153.3 119 67.2
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 9.5e-29 132.5 355 30.4
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 1.5e-26 125.2 117 55.6
Migut.L00946 Erythranthe guttata HOM05D006560 ORTHO05D008164 4.3e-21 107.1 156 41.7
Nn3g18626 Nelumbo nucifera HOM05D006560 ORTHO05D008164 3.6e-20 104.0 82 69.5
FAN18G2665 Fragaria x ananassa HOM05D006560 ORTHO05D008164 8.0e-20 102.8 68 72.1
CBR_g29321 Chara braunii HOM05D006560 ORTHO05D008164 1.9e-16 91.7 201 30.3
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.9e-09 67.8 52 67.3
Ciclev10013286m.g Citrus clementina HOM05D006560 ORTHO05D008164 1.4e-08 65.5 57 52.6
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.9e-08 65.1 44 72.7
Dinv24123 Davidia involucrata HOM05D006560 ORTHO05D008164 3.0e-06 57.8 30 73.3


User provided reference genes

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