Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.4e-131 473.0 241 100.0
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 4.1e-112 408.3 241 84.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.1e-109 400.2 240 82.1
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.5e-109 399.8 241 82.2
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.3e-109 398.7 240 80.8
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 4.7e-108 394.8 241 80.5
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 6.1e-108 394.4 241 80.5
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 8.0e-108 394.0 241 81.3
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 5.2e-107 391.3 241 79.3
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 5.2e-107 391.3 241 82.6
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 6.8e-107 391.0 241 79.7
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.5e-106 389.8 240 80.8
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.0e-106 389.4 241 78.8
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 3.4e-106 388.7 241 79.7
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 3.4e-106 388.7 241 78.4
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 4.4e-106 388.3 241 78.8
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.4e-106 388.3 240 79.2
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 4.9e-105 384.8 241 78.4
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 6.4e-105 384.4 241 78.4
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 1.4e-104 383.3 237 79.7
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.8e-104 382.9 241 78.8
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.4e-104 381.3 241 77.6
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 7.0e-104 380.9 241 78.4
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 7.0e-104 380.9 240 77.1
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 9.2e-104 380.6 241 79.7
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.6e-103 379.8 241 78.8
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.0e-103 379.4 240 79.2
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 5.9e-103 377.9 241 78.0
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.9e-103 377.9 241 76.8
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 7.8e-103 377.5 240 78.3
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.0e-102 377.1 241 78.0
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.0e-102 377.1 238 79.0
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.3e-102 376.7 241 76.3
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 1.3e-102 376.7 236 80.1
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.7e-102 376.3 222 82.9
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.7e-102 376.3 241 77.6
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.7e-102 376.3 239 78.2
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.7e-102 376.3 239 78.2
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 3.9e-102 375.2 236 75.4
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.0e-102 374.8 240 78.8
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.6e-102 374.4 234 79.1
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 6.6e-102 374.4 239 78.2
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 1.1e-101 373.6 241 76.3
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 3.3e-101 372.1 236 78.0
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 3.3e-101 372.1 239 76.2
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 9.5e-101 370.5 240 76.7
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.2e-100 370.2 241 74.3
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.2e-100 370.2 241 76.3
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.6e-100 369.8 239 76.6
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 2.1e-100 369.4 234 77.8
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 4.7e-100 368.2 274 69.7
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 8.0e-100 367.5 239 76.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 1.0e-99 367.1 240 75.4
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.4e-99 366.7 240 75.8
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.1e-99 365.5 241 75.5
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 5.2e-99 364.8 232 77.2
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 5.2e-99 364.8 235 75.3
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.9e-99 364.0 232 77.2
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 1.2e-98 363.6 241 75.1
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.0e-98 362.8 260 70.4
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.4e-98 362.1 241 75.9
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.4e-98 362.1 232 76.3
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 4.4e-98 361.7 212 82.5
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 7.5e-98 360.9 239 75.3
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 7.5e-98 360.9 239 75.3
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.3e-97 360.1 232 75.9
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.3e-97 360.1 239 76.2
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.7e-97 359.8 232 76.3
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.2e-97 359.4 241 73.0
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 2.2e-97 359.4 238 74.4
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.9e-97 359.0 239 74.9
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 6.4e-97 357.8 242 75.2
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 6.4e-97 357.8 233 77.3
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.1e-96 357.1 239 74.9
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.1e-96 357.1 241 72.6
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.2e-96 355.5 233 76.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.1e-96 355.1 233 75.5
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 5.4e-96 354.8 249 71.9
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 9.2e-96 354.0 239 73.2
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 9.2e-96 354.0 236 75.0
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 9.2e-96 354.0 228 77.2
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.6e-95 353.2 235 73.2
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 6.0e-95 351.3 266 68.0
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.3e-94 350.1 239 72.0
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.3e-94 349.4 206 83.5
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 3.0e-94 349.0 241 73.4
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 8.6e-94 347.4 232 75.0
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.9e-93 346.3 231 71.4
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.5e-93 345.9 340 56.2
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.5e-93 345.9 213 80.3
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 3.3e-93 345.5 239 72.4
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 5.6e-93 344.7 232 74.1
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.2e-92 343.6 232 73.7
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 6.2e-92 341.3 234 73.5
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.5e-90 334.3 287 61.0
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.7e-89 333.2 239 68.6
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 2.2e-89 332.8 211 76.8
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 4.9e-89 331.6 202 80.2
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.1e-88 330.5 280 62.5
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 2.4e-88 329.3 242 69.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.0e-86 323.9 199 80.4
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.1e-85 320.5 201 75.6
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 3.1e-83 312.4 203 74.9
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 1.2e-82 310.5 216 70.4
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.4e-80 303.5 241 66.8
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 9.2e-80 300.8 190 76.3
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 3.0e-78 295.8 239 64.4
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.5e-74 283.5 176 78.4
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.5e-74 283.5 233 61.4
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 5.8e-74 281.6 232 58.6
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.3e-73 280.4 171 79.5
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.3e-70 269.6 167 77.8
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.1e-67 260.8 226 55.3
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.2e-64 248.8 149 81.9
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.9e-61 240.0 145 79.3
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 6.0e-55 218.4 195 55.4
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 3.9e-54 215.7 135 77.8
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-53 214.2 141 75.2
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.1e-53 214.2 141 75.2
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 5.8e-50 201.8 125 77.6
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.2e-49 199.9 224 46.9
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 1.1e-48 197.6 182 58.8
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 3.2e-48 196.1 170 62.4
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.1e-47 193.4 127 75.6
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 3.5e-47 192.6 134 68.7
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 7.9e-47 191.4 121 76.0
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 3.9e-46 189.1 119 80.7
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 5.7e-45 185.3 119 74.8
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 1.3e-44 184.1 120 77.5
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 1.5e-42 177.2 234 44.0
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-37 161.0 130 65.4
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.5e-34 150.6 121 65.3
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.6e-31 139.0 111 65.8
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.9e-31 138.3 101 69.3
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.0e-29 133.7 132 53.0
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 3.7e-28 129.4 85 68.2
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 6.3e-28 128.6 159 44.7
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 5.9e-26 122.1 235 35.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.3e-25 120.9 80 73.8
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.1e-24 117.9 106 58.5
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.9e-24 117.1 89 62.9
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 3.2e-24 116.3 90 60.0
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 4.7e-23 112.5 91 58.2
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.9e-22 109.4 72 76.4
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.5e-21 107.5 99 60.6
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 3.5e-18 96.3 183 31.1
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.0e-17 94.7 54 81.5
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-15 87.8 50 80.0
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.4e-14 84.3 62 67.7
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 4.1e-11 72.8 162 35.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 8.5e-09 65.1 37 78.4
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 7.2e-08 62.0 33 78.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 1.8e-06 57.4 30 83.3


User provided reference genes

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