Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 1.7e-221 772.3 387 100.0
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 2.3e-136 489.6 369 67.5
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 4.0e-133 478.8 345 70.1
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 7.5e-132 474.6 381 65.6
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 1.2e-129 467.2 354 69.2
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 1.7e-128 463.4 397 61.5
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 3.8e-128 462.2 347 68.6
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 1.6e-126 456.8 342 68.1
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 3.6e-126 455.7 346 67.3
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 6.1e-126 454.9 379 62.0
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.4e-125 453.8 342 67.3
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 1.4e-125 453.8 342 67.3
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 1.8e-125 453.4 351 66.7
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 3.0e-125 452.6 350 67.1
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 3.0e-125 452.6 338 66.9
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 5.2e-125 451.8 345 67.2
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 6.8e-125 451.4 347 66.0
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 8.9e-125 451.1 399 62.7
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 8.9e-125 451.1 344 67.4
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 1.5e-124 450.3 346 65.3
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 2.0e-124 449.9 344 66.9
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 4.4e-124 448.7 352 65.6
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 9.8e-124 447.6 361 64.0
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.3e-123 447.2 342 66.7
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 1.7e-123 446.8 344 66.3
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 2.9e-123 446.0 415 59.3
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 6.4e-123 444.9 356 65.7
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 2.4e-122 443.0 364 62.9
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 5.4e-122 441.8 339 66.1
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 1.2e-121 440.7 338 64.8
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 1.2e-121 440.7 377 61.8
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 3.5e-121 439.1 346 65.3
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 3.5e-121 439.1 349 64.5
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 4.6e-121 438.7 486 52.7
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 1.7e-120 436.8 350 64.9
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 3.0e-120 436.0 391 58.8
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 3.9e-120 435.6 371 62.5
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 2.5e-119 433.0 357 62.7
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 3.3e-119 432.6 343 63.8
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 7.3e-119 431.4 346 62.4
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 9.5e-119 431.0 335 66.0
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 1.6e-118 430.3 357 61.3
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 1.6e-118 430.3 357 61.3
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 3.6e-118 429.1 335 65.4
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 3.6e-118 429.1 347 63.1
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 8.0e-118 427.9 354 62.1
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 1.1e-117 427.6 361 60.7
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 2.3e-117 426.4 357 61.9
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 2.3e-117 426.4 350 63.4
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 3.1e-117 426.0 357 61.9
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 5.2e-117 425.2 346 62.4
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 6.8e-117 424.9 351 63.2
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 1.2e-116 424.1 349 63.0
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 1.2e-116 424.1 340 64.4
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 1.5e-116 423.7 357 61.6
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 1.5e-116 423.7 349 61.3
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 2.0e-116 423.3 343 62.1
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 2.0e-116 423.3 343 62.1
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 2.0e-116 423.3 358 61.7
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 2.6e-116 422.9 355 62.0
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 4.4e-116 422.2 343 63.0
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 5.8e-116 421.8 335 64.2
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 5.8e-116 421.8 353 62.3
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 7.5e-116 421.4 335 63.9
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 7.5e-116 421.4 355 60.8
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 2.2e-115 419.9 361 59.8
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.2e-115 419.9 335 63.6
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 2.9e-115 419.5 341 64.2
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 3.7e-115 419.1 355 60.0
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 3.7e-115 419.1 358 61.5
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 1.1e-114 417.5 361 59.3
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 3.2e-114 416.0 357 60.8
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 3.2e-114 416.0 361 59.6
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 7.0e-114 414.8 344 64.2
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 6.0e-113 411.8 357 59.7
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 1.7e-112 410.2 360 59.2
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 1.1e-111 407.5 353 59.2
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 1.5e-111 407.1 356 59.3
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 1.5e-111 407.1 314 65.3
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.5e-111 407.1 454 52.6
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 9.5e-111 404.4 349 59.9
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 1.8e-109 400.2 340 60.0
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 2.3e-109 399.8 366 59.0
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 5.8e-108 395.2 341 59.2
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 5.8e-108 395.2 349 58.5
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 1.9e-106 390.2 370 57.6
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 9.2e-106 387.9 343 59.5
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 1.9e-103 380.2 443 48.3
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.1e-101 374.4 344 59.6
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 2.2e-99 366.7 314 60.5
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 3.8e-99 365.9 415 52.8
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 7.8e-97 358.2 217 77.4
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 1.6e-94 350.5 248 69.0
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 8.1e-94 348.2 351 55.0
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 5.3e-93 345.5 422 48.8
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 5.4e-90 335.5 297 58.6
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 5.6e-87 325.5 315 54.6
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 5.3e-85 318.9 205 73.2
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 9.6e-79 298.1 310 51.6
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 2.0e-76 290.4 368 45.9
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 1.1e-74 284.6 174 75.3
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 5.5e-74 282.3 205 67.3
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.1e-71 274.6 348 46.0
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 7.4e-71 271.9 298 53.4
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 2.8e-70 270.0 145 84.1
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 6.9e-69 265.4 350 43.4
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 3.8e-67 259.6 341 44.0
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 4.6e-65 252.7 190 63.2
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 3.0e-64 250.0 146 79.5
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 2.5e-63 246.9 305 47.5
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 1.3e-59 234.6 137 80.3
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 5.7e-47 192.6 344 37.2
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 4.8e-46 189.5 197 52.3
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 8.2e-46 188.7 118 74.6
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 1.7e-43 181.0 200 52.0
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 4.4e-39 166.4 241 46.1
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 1.4e-32 144.8 309 33.7
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 3.7e-30 136.7 191 40.3
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 4.8e-30 136.3 93 72.0
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 7.7e-28 129.0 186 39.2
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 1.3e-22 111.7 127 50.4
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 9.1e-21 105.5 169 36.7
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 9.1e-21 105.5 65 75.4
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 1.2e-20 105.1 119 53.8
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 2.0e-20 104.4 82 62.2
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 3.5e-20 103.6 70 71.4
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 1.7e-19 101.3 118 50.0
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 1.1e-18 98.6 90 60.0
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 1.2e-17 95.1 120 46.7
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 1.6e-17 94.7 187 36.4
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 1.4e-16 91.7 96 53.1
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 9.8e-15 85.5 89 53.9
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.3e-14 85.1 124 41.9
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 3.7e-14 83.6 103 49.5
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 2.4e-13 80.9 117 46.2
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 3.2e-13 80.5 81 50.6
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 5.4e-13 79.7 60 63.3
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 7.0e-13 79.3 80 50.0
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 9.2e-13 79.0 53 69.8
FvH4_4g05840 Fragaria vesca HOM05D005043 ORTHO05D006182 1.6e-12 78.2 167 34.1
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 4.5e-12 76.6 44 77.3
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 5.9e-12 76.3 47 70.2
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 7.8e-12 75.9 36 94.4
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 1.7e-11 74.7 70 45.7
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 8.0e-09 65.9 184 33.2
RcHm_v2.0_Chr1g0352751 Rosa chinensis HOM05D005043 ORTHO05D006182 1.8e-08 64.7 41 68.3
HPP92_025971 Vanilla planifolia HOM05D001448 ORTHO05D005781 1.5e-07 61.6 109 36.7
Manes.05G087700 Manihot esculenta HOM05D001448 ORTHO05D005781 9.8e-07 58.9 85 37.6
Ciclev10018683m.g Citrus clementina HOM05D001448 ORTHO05D005781 1.3e-06 58.5 85 37.6
Mapoly0154s0015 Marchantia polymorpha HOM05D001448 ORTHO05D005781 1.3e-06 58.5 86 39.5
Thhalv10016190m.g Eutrema salsugineum HOM05D001448 ORTHO05D005781 2.2e-06 57.8 86 36.0
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 2.2e-06 57.8 31 77.4
Atru.chr5.1640 Acer truncatum HOM05D001448 ORTHO05D005781 2.9e-06 57.4 112 33.9
Os07g0413700 Oryza sativa ssp. japonica HOM05D001448 ORTHO05D005781 2.9e-06 57.4 88 35.2
Sc24g0002470 Simmondsia chinensis HOM05D001448 ORTHO05D005781 3.7e-06 57.0 86 41.9
Rhsim01G0266300 Rhododendron simsii HOM05D001448 ORTHO05D005781 6.4e-06 56.2 85 36.5
CARHR124940 Cardamine hirsuta HOM05D001448 ORTHO05D005781 8.3e-06 55.8 78 38.5
PSO063G1607 Papaver somniferum HOM05D001448 ORTHO05D005781 8.3e-06 55.8 89 36.0


User provided reference genes

Program Settings