Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 0.0e+00 1141.3 578 100.0
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 4.7e-130 469.2 516 53.5
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 1.0e-129 468.0 496 53.2
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 4.4e-128 462.6 503 53.3
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 8.3e-127 458.4 488 52.9
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.2e-125 454.5 486 51.4
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.6e-125 454.1 508 52.6
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 7.8e-125 451.8 552 48.6
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.0e-124 449.9 494 53.2
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.5e-123 447.6 507 51.7
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 1.4e-121 441.0 505 52.3
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.6e-120 436.8 542 50.2
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.7e-119 434.1 553 48.5
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 8.3e-119 431.8 571 46.4
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.1e-118 429.5 494 51.0
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 5.4e-118 429.1 538 48.3
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 2.0e-117 427.2 543 48.3
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 2.0e-117 427.2 491 51.1
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 2.3e-116 423.7 542 48.2
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 3.0e-116 423.3 545 47.5
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 6.6e-116 422.2 495 51.3
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.1e-115 421.4 507 49.9
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 1.1e-115 421.4 546 46.5
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 3.3e-115 419.9 495 48.7
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 2.8e-114 416.8 546 47.6
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 8.9e-113 411.8 553 46.5
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 3.4e-112 409.8 509 48.9
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.7e-111 407.5 498 50.8
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 4.9e-111 406.0 553 46.1
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 4.9e-111 406.0 547 47.5
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 8.3e-111 405.2 510 49.2
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.1e-110 402.9 520 47.5
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 7.1e-110 402.1 502 48.6
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 2.7e-109 400.2 561 46.2
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.7e-108 397.5 500 49.6
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 2.3e-108 397.1 504 49.2
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 6.6e-108 395.6 534 46.6
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 4.3e-107 392.9 514 47.5
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 4.7e-106 389.4 496 48.0
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.4e-105 387.9 496 47.2
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 3.1e-105 386.7 550 47.5
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 2.4e-102 377.1 510 48.6
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.2e-102 376.7 490 47.6
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 4.1e-102 376.3 551 45.0
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 5.4e-102 375.9 499 45.7
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 7.1e-102 375.6 534 44.9
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.6e-101 374.4 510 48.2
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 2.7e-101 373.6 591 40.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.7e-101 373.6 491 48.9
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 3.5e-101 373.2 511 48.7
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 4.6e-101 372.9 555 44.3
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 3.9e-100 369.8 488 45.9
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 6.6e-100 369.0 556 44.1
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 9.6e-99 365.2 541 45.8
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 3.6e-98 363.2 548 43.6
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 8.1e-98 362.1 532 43.6
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 1.1e-97 361.7 500 47.4
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.4e-97 361.3 529 45.4
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.4e-97 361.3 575 42.4
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 2.4e-97 360.5 566 43.3
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.1e-97 360.1 545 43.7
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 7.6e-96 355.5 632 39.1
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.9e-94 350.9 589 40.7
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 2.4e-94 350.5 581 41.7
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 3.2e-94 350.1 509 45.8
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 3.2e-94 350.1 511 46.0
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 7.1e-94 349.0 598 39.8
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 7.1e-94 349.0 647 39.3
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 2.1e-93 347.4 509 45.4
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 2.1e-93 347.4 556 43.2
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 5.1e-92 342.8 563 40.7
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.3e-91 340.1 489 44.6
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.6e-90 337.8 569 41.3
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.8e-90 337.0 492 42.5
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 1.1e-89 335.1 560 41.2
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.4e-89 334.0 560 41.1
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.5e-88 329.7 547 41.3
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.3e-87 328.2 559 40.8
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 1.3e-87 328.2 498 44.0
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 5.4e-86 322.8 518 43.8
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 2.7e-85 320.5 502 44.0
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 2.1e-82 310.8 507 43.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.4e-81 307.4 478 41.2
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 3.1e-81 307.0 556 37.6
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.0e-81 306.6 570 38.4
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 9.0e-81 305.4 569 37.8
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 2.0e-80 304.3 569 38.0
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 4.5e-80 303.1 568 36.8
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 4.5e-80 303.1 490 40.2
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 9.9e-80 302.0 492 40.2
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 7.9e-77 292.4 598 36.6
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.1e-75 288.5 490 39.4
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.8e-74 283.1 539 38.8
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 4.8e-74 283.1 347 49.9
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 8.2e-74 282.3 454 41.9
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 5.8e-72 276.2 694 33.1
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.4e-70 271.6 532 38.2
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 9.0e-65 252.3 596 34.6
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 5.0e-63 246.5 492 37.8
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 3.2e-62 243.8 667 31.3
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 5.5e-62 243.0 669 31.5
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 3.9e-60 236.9 691 30.7
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 4.3e-59 233.4 699 30.6
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 6.9e-57 226.1 551 32.7
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.2e-56 225.3 662 31.0
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 9.4e-54 215.7 194 56.2
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 3.4e-48 197.2 308 44.5
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.8e-47 193.7 471 34.2
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.8e-39 167.2 506 31.4
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 4.2e-38 163.7 178 46.6
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 9.4e-38 162.5 493 31.0
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.6e-37 161.8 126 63.5
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.3e-36 157.9 493 30.6
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 4.0e-36 157.1 123 65.9
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 9.7e-35 152.5 491 30.1
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 8.8e-28 129.4 569 26.2
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 3.7e-26 124.0 222 35.6
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 7.0e-25 119.8 244 37.3
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 7.0e-25 119.8 169 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 2.7e-24 117.9 203 35.5
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.3e-22 110.9 103 56.3
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 6.1e-21 106.7 222 34.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 2.0e-19 101.7 129 42.6
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 2.8e-18 97.8 254 31.1
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 7.0e-17 93.2 98 48.0
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 6.6e-15 86.7 190 34.7
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.2e-13 82.4 157 40.1
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 7.8e-08 63.2 174 31.6
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.0e-07 61.2 49 46.9
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 5.0e-07 60.5 174 31.0
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 4.3e-06 57.4 94 43.6


User provided reference genes

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