Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0416 Punica granatum HOM05D003327 ORTHO05D024157 1.5e-71 273.1 178 100.0
PGR142G1636 Punica granatum HOM05D003327 ORTHO05D024157 6.3e-33 144.8 84 86.9
PGR142G3638 Punica granatum HOM05D000494 ORTHO05D024157 1.7e-22 110.2 94 62.8
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 2.5e-21 106.3 75 74.7
ATR0751G069 Amborella trichopoda HOM05D003327 ORTHO05D004535 2.7e-20 102.8 67 77.6
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 3.6e-20 102.4 81 65.4
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 6.1e-20 101.7 72 76.4
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 6.1e-20 101.7 72 76.4
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 6.1e-20 101.7 72 76.4
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 2.3e-19 99.8 73 71.2
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 2.3e-19 99.8 72 70.8
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 2.3e-19 99.8 73 71.2
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 2.3e-19 99.8 58 84.5
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 2.3e-19 99.8 58 84.5
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 3.9e-19 99.0 61 82.0
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 5.1e-19 98.6 72 72.2
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 6.7e-19 98.2 61 80.3
Sed0023241 Sechium edule HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 6.7e-19 98.2 58 82.8
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 8.8e-19 97.8 82 63.4
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 8.8e-19 97.8 58 81.0
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 1.1e-18 97.4 58 82.8
CDE05G1413 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.5e-18 97.1 58 81.0
CDE05G2562 Ceratophyllum demersum HOM05D003327 ORTHO05D004535 1.5e-18 97.1 58 81.0
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 2.0e-18 96.7 58 81.0
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 2.6e-18 96.3 60 78.3
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 2.6e-18 96.3 58 81.0
Sp6g03490 Schrenkiella parvula HOM05D003327 ORTHO05D004535 2.6e-18 96.3 72 69.4
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 3.3e-18 95.9 57 82.5
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 4.4e-18 95.5 72 68.1
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 4.4e-18 95.5 58 79.3
AUR62038154 Chenopodium quinoa HOM05D003327 ORTHO05D004535 5.7e-18 95.1 57 80.7
HPP92_022219 Vanilla planifolia HOM05D003327 ORTHO05D004535 5.7e-18 95.1 58 79.3
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 7.4e-18 94.7 58 79.3
Sabra13G0114600 Salix brachista HOM05D003327 ORTHO05D004535 7.4e-18 94.7 58 79.3
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 7.4e-18 94.7 58 79.3
TAR629G1444 Trochodendron aralioides HOM05D003327 ORTHO05D004535 7.4e-18 94.7 60 76.7
Actinidia09866 Actinidia chinensis HOM05D003327 ORTHO05D004535 9.7e-18 94.4 58 79.3
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 9.7e-18 94.4 64 75.0
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 9.7e-18 94.4 64 75.0
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 9.7e-18 94.4 61 77.0
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 9.7e-18 94.4 61 77.0
SMO112G0037 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 9.7e-18 94.4 58 75.9
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 9.7e-18 94.4 61 73.8
THA.LOC104801181 Tarenaya hassleriana HOM05D003327 ORTHO05D004535 9.7e-18 94.4 60 76.7
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 1.3e-17 94.0 63 71.4
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 1.3e-17 94.0 63 71.4
Carub.0006s3363 Capsella rubella HOM05D003327 ORTHO05D004535 1.3e-17 94.0 72 66.7
Mapoly0016s0118 Marchantia polymorpha HOM05D003327 ORTHO05D004535 1.3e-17 94.0 58 77.6
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 1.7e-17 93.6 72 66.7
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 1.7e-17 93.6 72 69.4
ECA248G1946 Erigeron canadensis HOM05D003327 ORTHO05D004535 1.7e-17 93.6 58 79.3
HanXRQChr11g0343151 Helianthus annuus HOM05D003327 ORTHO05D004535 1.7e-17 93.6 58 77.6
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 1.7e-17 93.6 58 77.6
Lsat_1_v5_gn_1_74900 Lactuca sativa HOM05D003327 ORTHO05D004535 1.7e-17 93.6 58 77.6
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 1.7e-17 93.6 58 75.9
Potri.013G135300 Populus trichocarpa HOM05D003327 ORTHO05D004535 1.7e-17 93.6 58 77.6
SMO364G0651 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.7e-17 93.6 58 75.9
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 2.2e-17 93.2 57 77.2
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 2.2e-17 93.2 58 77.6
AL6G49440 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 2.8e-17 92.8 72 68.1
Lj8P113T26 Lonicera japonica HOM05D003327 ORTHO05D004535 2.8e-17 92.8 58 77.6
Pp3c24_11640 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.8e-17 92.8 58 77.6
Pp3c8_17590 Physcomitrium patens HOM05D003327 ORTHO05D004535 2.8e-17 92.8 58 77.6
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 2.8e-17 92.8 60 73.3
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 2.8e-17 92.8 60 73.3
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 3.7e-17 92.4 58 75.9
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 3.7e-17 92.4 58 75.9
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 4.8e-17 92.0 54 83.3
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 4.8e-17 92.0 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.1992 Anthoceros agrestis HOM05D003327 ORTHO05D004535 6.3e-17 91.7 58 75.9
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 6.3e-17 91.7 58 77.6
Thhalv10028386m.g Eutrema salsugineum HOM05D003327 ORTHO05D004535 6.3e-17 91.7 60 73.3
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 8.2e-17 91.3 58 74.1
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 8.2e-17 91.3 58 74.1
unitig_62.g23173 Utricularia gibba HOM05D003327 ORTHO05D004535 8.2e-17 91.3 58 75.9
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 8.2e-17 91.3 57 77.2
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 1.1e-16 90.9 58 74.1
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.1e-16 90.9 58 74.1
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.1e-16 90.9 58 74.1
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 1.1e-16 90.9 58 74.1
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 1.1e-16 90.9 58 74.1
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.4e-16 90.5 55 80.0
AUR62004130 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.8e-16 90.1 54 81.5
CBR_g16993 Chara braunii HOM05D003327 ORTHO05D004535 2.4e-16 89.7 58 70.7
Ah.08g216420 Amaranthus hybridus HOM05D003327 ORTHO05D004535 5.3e-16 88.6 55 78.2
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 5.3e-16 88.6 54 79.6
Zm00001eb137760 Zea mays HOM05D003327 ORTHO05D004535 5.3e-16 88.6 58 72.4
Zm00001eb410870 Zea mays HOM05D003327 ORTHO05D004535 5.3e-16 88.6 58 72.4
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 6.9e-16 88.2 58 70.7
AT4G03430 Arabidopsis thaliana HOM05D003327 ORTHO05D004535 2.0e-15 86.7 58 70.7
DCAR_021237 Daucus carota HOM05D003327 ORTHO05D004535 2.0e-15 86.7 74 66.2
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 2.6e-15 86.3 72 66.7
Os10g0498600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.6e-15 86.3 71 66.2
TPR.G38990 Trifolium pratense HOM05D003327 ORTHO05D004535 2.6e-15 86.3 72 65.3
SHI18144 Sapria himalayana HOM05D003327 ORTHO05D004535 4.5e-15 85.5 58 74.1
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 6.5e-14 81.6 58 70.7
Os01g0263600 Oryza sativa ssp. japonica HOM05D003327 ORTHO05D004535 2.5e-13 79.7 62 66.1
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 3.2e-13 79.3 58 69.0
Nitab4.5_0000512g0190 Nicotiana tabacum HOM05D003327 ORTHO05D004535 5.5e-13 78.6 58 67.2
Nitab4.5_0002526g0040 Nicotiana tabacum HOM05D003327 ORTHO05D004535 5.5e-13 78.6 58 67.2
Nitab4.5_0003263g0030 Nicotiana tabacum HOM05D003327 ORTHO05D004535 5.5e-13 78.6 58 67.2
SGA_v2.0_scaffold8G04345 Striga asiatica HOM05D003327 ORTHO05D004535 1.2e-12 77.4 57 68.4
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 3.6e-12 75.9 59 64.4
A08p17560 Brassica napus HOM05D003327 ORTHO05D004535 1.8e-11 73.6 48 72.9
BraA08t33710Z Brassica rapa HOM05D003327 ORTHO05D004535 1.8e-11 73.6 48 72.9
AT4G38590 Arabidopsis thaliana HOM05D000140 ORTHO05D000087 6.7e-11 71.6 57 61.4
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 6.7e-11 71.6 63 57.1
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 2.0e-10 70.1 42 78.6
SEGI_03770 Sequoiadendron giganteum HOM05D003327 ORTHO05D004535 2.0e-10 70.1 63 58.7
PSO017G4615 Papaver somniferum HOM05D003327 ORTHO05D004535 4.4e-10 68.9 73 57.5
PSO478G4092 Papaver somniferum HOM05D003327 ORTHO05D004535 4.4e-10 68.9 73 57.5
Dinv12916 Davidia involucrata HOM05D003327 ORTHO05D004535 2.2e-09 66.6 44 70.5
BcaB01g02603 Brassica carinata HOM05D003327 ORTHO05D024157 2.8e-09 66.2 62 54.8
SMO337G0045 Selaginella moellendorffii HOM05D003327 ORTHO05D004535 1.8e-08 63.5 55 58.2
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 7.0e-08 61.6 58 56.9
Cre14.g633650 Chlamydomonas reinhardtii HOM05D003327 ORTHO05D004535 3.5e-07 59.3 57 59.6
C03p86560 Brassica napus HOM05D003327 ORTHO05D004535 7.7e-07 58.2 60 58.3
BolC3t20950H Brassica oleracea HOM05D003327 ORTHO05D004535 7.7e-07 58.2 60 58.3
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 2.2e-06 56.6 58 55.2
Rhsim11G0018200 Rhododendron simsii HOM05D003327 ORTHO05D024157 2.2e-06 56.6 56 58.9
BcaC01g00984 Brassica carinata HOM05D003327 ORTHO05D004535 2.9e-06 56.2 60 56.7
PGR031G0482 Punica granatum HOM05D000237 ORTHO05D001145 3.8e-06 55.8 118 36.4
unitig_52.g17348 Utricularia gibba HOM05D003327 ORTHO05D018410 3.8e-06 55.8 47 61.7
MCO12G329 Micromonas commoda HOM05D003327 ORTHO05D004535 5.0e-06 55.5 48 58.3


User provided reference genes

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