Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.4e-162 576.2 289 100.0
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.2e-97 360.5 297 65.0
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 2.0e-97 359.8 294 64.6
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.0e-96 357.5 290 66.9
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.5e-96 354.8 295 65.1
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.4e-95 353.6 296 63.5
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.5e-95 352.8 295 64.4
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 3.2e-95 352.4 290 64.5
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 9.3e-95 350.9 295 64.7
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.6e-94 350.1 295 64.1
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.7e-94 349.4 294 63.9
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 4.6e-94 348.6 287 63.4
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 4.6e-94 348.6 297 63.6
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.1e-92 344.0 295 63.7
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 2.5e-92 342.8 291 61.9
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 9.7e-92 340.9 294 62.9
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 9.7e-92 340.9 287 61.3
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.3e-91 340.5 291 61.9
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.3e-91 340.5 291 61.9
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.3e-91 340.5 295 61.4
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 6.3e-91 338.2 307 59.3
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 8.2e-91 337.8 287 62.7
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 5.3e-90 335.1 296 62.8
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 5.3e-90 335.1 290 62.4
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 5.3e-90 335.1 290 60.7
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 9.0e-90 334.3 318 58.8
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 9.0e-90 334.3 288 62.2
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.2e-89 334.0 296 62.8
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.2e-89 334.0 296 62.5
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.2e-89 334.0 296 62.8
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.5e-89 333.6 296 62.8
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.5e-89 333.6 300 61.7
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 2.6e-89 332.8 296 62.5
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 2.6e-89 332.8 287 58.9
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 5.9e-89 331.6 287 61.0
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.0e-88 330.9 296 61.8
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.3e-88 330.5 308 56.8
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 1.3e-88 330.5 294 62.2
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-88 329.7 293 61.4
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.2e-88 329.7 287 58.5
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 3.8e-88 328.9 292 60.3
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.8e-88 328.9 285 60.4
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 3.8e-88 328.9 287 61.0
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 6.5e-88 328.2 291 59.1
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.1e-87 327.4 277 65.7
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.4e-87 327.0 295 58.6
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 2.5e-87 326.2 287 59.2
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 5.5e-87 325.1 344 54.1
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 5.5e-87 325.1 296 61.5
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 7.2e-87 324.7 294 59.5
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.2e-86 323.9 287 59.2
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 1.2e-86 323.9 292 58.2
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.7e-86 322.8 299 57.9
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.8e-85 320.1 300 59.3
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.8e-85 320.1 293 57.0
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 2.3e-85 319.7 292 61.6
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.0e-85 319.3 249 65.1
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.0e-85 319.3 249 65.1
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 3.0e-85 319.3 299 60.9
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 3.0e-85 319.3 295 60.0
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 3.9e-85 318.9 258 67.4
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 3.9e-85 318.9 290 58.6
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 5.1e-85 318.5 299 61.9
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 5.1e-85 318.5 292 58.6
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.5e-84 317.0 327 53.2
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 2.0e-84 316.6 299 60.2
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 4.3e-84 315.5 276 60.1
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.3e-83 313.9 229 68.6
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 1.3e-83 313.9 274 62.0
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.7e-83 313.5 263 64.6
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 1.7e-83 313.5 301 59.1
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 2.2e-83 313.2 286 60.5
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 2.8e-83 312.8 276 61.6
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.7e-83 312.4 263 63.9
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 8.2e-83 311.2 299 56.5
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 8.2e-83 311.2 283 59.4
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 8.2e-83 311.2 290 59.7
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.8e-82 310.1 253 66.0
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 6.9e-82 308.1 235 66.4
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 3.4e-81 305.8 289 55.4
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 7.7e-81 304.7 284 57.7
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 7.7e-81 304.7 291 56.0
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 3.8e-80 302.4 286 59.1
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 6.5e-80 301.6 288 55.2
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.2e-78 297.4 268 59.3
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 4.7e-78 295.4 316 52.5
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 6.1e-78 295.0 252 59.5
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 1.0e-77 294.3 226 63.7
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.8e-77 293.5 291 54.6
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 3.0e-77 292.7 293 54.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.5e-76 290.4 289 53.6
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.0e-76 290.0 225 60.4
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 4.4e-76 288.9 286 54.5
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 7.4e-76 288.1 291 54.0
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 6.3e-75 285.0 247 58.3
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.8e-74 283.5 270 59.6
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 9.1e-74 281.2 222 65.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 7.7e-73 278.1 286 52.1
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.3e-72 277.3 281 56.2
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 5.0e-72 275.4 215 65.6
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.1e-71 274.2 211 66.4
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.1e-71 274.2 261 57.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 4.2e-71 272.3 251 59.8
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 7.2e-71 271.6 213 64.8
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.7e-70 268.9 222 64.4
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 3.7e-67 259.2 227 60.8
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.5e-63 246.5 297 50.2
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 2.3e-61 240.0 190 61.6
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 2.3e-61 240.0 280 48.6
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 9.4e-55 218.0 218 55.0
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 1.2e-52 211.1 301 41.9
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.5e-52 210.7 227 55.5
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 4.4e-52 209.1 202 59.4
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.2e-51 206.8 283 42.8
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 3.7e-51 206.1 200 56.5
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.0e-50 201.8 204 57.4
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 6.6e-48 195.3 233 51.5
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.5e-47 194.1 178 57.9
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.6e-46 190.7 155 66.5
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 8.9e-45 184.9 272 42.6
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 3.4e-44 183.0 222 46.8
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.3e-43 181.0 244 46.7
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 3.7e-43 179.5 131 68.7
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 3.5e-41 172.9 270 43.3
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 6.6e-40 168.7 200 51.0
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.3e-39 165.2 105 76.2
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.6e-38 164.1 291 39.5
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 6.4e-35 152.1 123 57.7
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 4.1e-34 149.4 170 51.2
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.0e-32 144.8 114 60.5
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 3.1e-29 133.3 262 34.0
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.0e-28 130.6 135 56.3
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 4.1e-26 122.9 202 41.1
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 2.7e-25 120.2 220 37.7
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.1e-23 114.8 87 64.4
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.7e-19 100.9 179 39.7
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 2.5e-15 87.0 248 28.6
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 9.6e-15 85.1 208 29.3
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.1e-07 61.6 85 50.6


User provided reference genes

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