Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 0.0e+00 1427.2 743 100.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1107.8 665 79.7
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1105.5 699 78.8
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1103.6 661 80.5
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1103.2 742 73.7
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1099.3 644 80.4
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1097.8 645 80.6
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 0.0e+00 1097.8 644 80.3
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 0.0e+00 1094.3 630 82.7
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1092.8 644 80.0
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1091.3 645 79.2
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1086.6 618 83.2
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1086.2 618 83.0
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 0.0e+00 1075.8 617 82.5
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 616 82.3
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.0e-311 1072.8 618 81.1
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 4.6e-311 1070.8 652 78.5
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 6.1e-311 1070.5 617 82.2
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 7.6e-311 1070.1 667 78.1
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.7e-310 1068.9 672 77.8
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 5.0e-310 1067.4 638 79.3
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 2.1e-308 1062.0 668 76.2
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 8.9e-307 1056.6 617 81.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.2e-306 1056.2 709 73.2
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 7.5e-306 1053.5 723 71.6
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 4.9e-305 1050.8 647 76.7
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 8.3e-305 1050.0 675 75.3
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 4.6e-303 1044.3 756 69.4
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.0e-302 1043.1 651 77.3
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 5.0e-302 1040.8 665 74.7
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 5.0e-302 1040.8 664 75.5
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.9e-301 1038.9 666 74.3
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.9e-301 1038.9 616 79.5
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.6e-301 1037.3 618 79.0
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 9.5e-301 1036.6 664 74.4
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.4e-299 1032.7 714 70.2
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 4.0e-299 1031.2 695 71.9
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.2e-297 1025.4 737 69.7
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.1e-296 1023.1 740 69.5
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 1.1e-296 1023.1 647 77.9
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 1.9e-296 1022.3 759 67.6
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 4.1e-296 1021.1 747 69.5
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 1.6e-295 1019.2 726 70.9
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 2.5e-293 1011.9 661 72.6
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 6.2e-292 1007.3 616 76.0
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 1.5e-290 1002.7 617 76.0
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.6e-290 1001.9 617 75.9
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 4.4e-290 1001.1 645 73.6
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 4.9e-289 997.7 617 75.7
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 6.4e-289 997.3 639 73.9
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 6.4e-289 997.3 639 73.9
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 6.4e-289 997.3 639 73.9
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 1.9e-288 995.7 761 66.4
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 1.2e-287 993.0 616 76.8
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 2.7e-287 991.9 667 72.3
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 4.6e-287 991.1 618 75.1
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.3e-286 989.6 659 70.9
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.7e-286 989.2 671 72.0
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 8.6e-286 986.9 671 71.8
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.1e-285 986.5 637 72.5
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.4e-283 979.5 726 67.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 1.7e-281 972.6 696 68.5
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 2.9e-281 971.8 755 65.0
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 6.4e-281 970.7 642 71.5
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 8.4e-281 970.3 647 72.6
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 4.1e-280 968.0 639 71.4
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 5.4e-280 967.6 757 63.9
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.1e-279 965.7 639 71.2
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 4.6e-279 964.5 639 71.2
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.0e-278 963.4 683 69.1
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 7.3e-277 957.2 701 67.3
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-276 955.7 759 63.8
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.1e-276 955.7 712 67.7
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 3.6e-276 954.9 747 65.5
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 8.1e-276 953.7 657 70.5
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.4e-275 953.0 638 71.5
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.4e-275 953.0 669 71.9
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.4e-275 953.0 565 79.3
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.4e-275 952.2 757 62.9
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 6.8e-275 950.7 761 63.3
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 6.8e-275 950.7 616 74.7
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 3.4e-274 948.3 541 83.2
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 7.6e-274 947.2 754 63.4
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 3.2e-272 941.8 639 72.0
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 8.7e-270 933.7 669 71.3
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 7.3e-269 930.6 617 72.6
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 6.2e-268 927.5 620 71.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 8.1e-268 927.2 617 72.1
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.9e-265 918.7 666 65.5
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 9.3e-264 913.7 720 63.8
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 9.3e-264 913.7 647 68.0
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 7.9e-263 910.6 594 73.6
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.3e-262 909.1 607 73.8
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 4.3e-261 904.8 684 64.9
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 5.6e-261 904.4 701 65.9
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 8.1e-260 900.6 670 69.0
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 4.5e-258 894.8 616 71.3
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.5e-253 879.8 765 60.9
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.4e-251 873.2 756 61.4
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 9.3e-248 860.5 654 66.1
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.1e-245 853.6 617 67.4
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 4.5e-242 841.6 672 64.0
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.4e-240 836.6 668 63.2
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 7.4e-237 824.3 641 64.3
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 4.8e-236 821.6 653 58.7
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.2e-234 817.0 713 60.2
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.9e-230 802.0 553 69.6
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 7.4e-229 797.7 670 58.5
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 5.9e-226 788.1 655 57.4
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 7.7e-226 787.7 598 67.7
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 6.7e-222 774.6 614 60.6
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 3.3e-221 772.3 678 59.1
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 7.4e-221 771.2 759 55.3
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 2.2e-220 769.6 637 58.4
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 2.1e-199 699.9 468 72.0
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 5.7e-197 691.8 424 76.9
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 3.1e-195 686.0 568 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 5.4e-195 685.3 580 58.3
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.5e-194 682.2 768 50.5
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.0e-193 681.0 567 61.2
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.3e-193 679.9 665 55.2
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 2.9e-193 679.5 642 55.3
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 4.0e-190 669.1 475 69.9
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 2.0e-178 630.2 478 65.3
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 2.7e-178 629.8 437 70.3
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 7.8e-178 628.2 429 68.8
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.3e-176 622.9 461 65.3
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.9e-174 614.8 425 68.7
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 9.2e-171 604.7 425 67.3
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.5e-168 596.7 646 48.1
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 1.3e-156 557.8 705 42.6
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 4.9e-148 529.3 629 43.1
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.8e-142 510.8 649 43.1
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 8.4e-140 501.9 461 57.0
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 4.3e-136 489.6 454 55.7
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 3.2e-131 473.4 610 40.2
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 2.8e-127 460.3 319 68.7
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.1e-106 389.4 436 48.2
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.1e-99 368.6 227 78.4
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.5e-96 358.2 189 87.8
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 7.7e-93 345.9 192 82.8
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.1e-91 342.0 183 85.2
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.2e-87 327.8 169 89.3
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 3.0e-81 307.4 197 73.1
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-80 304.7 185 75.1
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.3e-79 302.0 185 74.1
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 2.3e-73 281.2 185 71.4
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.5e-72 278.5 156 81.4
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.6e-66 258.5 136 85.3
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.3e-63 248.8 166 70.5
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 1.5e-56 225.3 178 64.0
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 2.9e-55 221.1 151 69.5
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.6e-52 209.9 105 88.6
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 8.1e-42 176.4 84 91.7
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.1e-41 176.0 113 75.2
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 4.6e-37 160.6 111 68.5
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.4e-33 148.3 95 73.7
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-29 135.2 79 77.2
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 3.9e-28 131.0 115 53.0
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 1.5e-27 129.0 149 49.0
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 5.6e-27 127.1 75 77.3
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 6.2e-26 123.6 93 65.6
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 6.9e-25 120.2 72 75.0
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 1.3e-23 115.9 85 63.5
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.1e-13 82.0 50 72.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 3.9e-12 77.8 50 72.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 2.5e-11 75.1 44 77.3
Sabra01G0062700 Salix brachista HOM05D000645 ORTHO05D000494 4.8e-10 70.9 350 24.3
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 1.8e-09 68.9 43 74.4
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 1.3e-07 62.8 63 55.6
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 1.7e-07 62.4 223 24.2
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 1.9e-06 58.9 283 21.6
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.9e-06 58.9 225 24.9
MSTRG.24860 Avicennia marina HOM05D000645 ORTHO05D000494 2.5e-06 58.5 256 25.4
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 3.2e-06 58.2 159 28.9
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 4.2e-06 57.8 150 32.7


User provided reference genes

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