Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 1.8e-197 692.6 402 100.0
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 8.0e-145 517.7 400 75.5
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 8.0e-145 517.7 389 75.6
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 2.4e-141 506.1 396 69.4
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 5.9e-140 501.5 385 73.0
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 1.0e-139 500.7 394 70.3
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.3e-139 500.4 398 69.3
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.3e-139 500.4 398 69.3
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.7e-139 500.0 397 68.8
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 3.0e-139 499.2 402 68.9
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 6.6e-139 498.0 397 68.8
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 5.6e-138 495.0 399 70.4
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 5.6e-138 495.0 379 72.6
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 9.5e-138 494.2 392 68.6
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 8.0e-137 491.1 392 68.1
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 1.0e-136 490.7 410 70.5
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 3.1e-136 489.2 395 71.1
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 6.8e-136 488.0 377 72.1
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 5.8e-135 485.0 397 67.3
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 5.8e-135 485.0 371 72.2
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 1.3e-134 483.8 395 66.3
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 1.3e-134 483.8 415 66.5
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 3.7e-134 482.3 385 70.4
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 1.1e-133 480.7 398 66.8
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 3.2e-133 479.2 398 64.6
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 4.1e-133 478.8 415 64.3
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 9.2e-133 477.6 398 68.3
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 2.7e-132 476.1 386 71.8
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 2.7e-132 476.1 408 70.1
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 7.8e-132 474.6 412 69.2
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 1.7e-131 473.4 405 66.4
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 1.7e-131 473.4 377 71.4
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 2.3e-131 473.0 376 70.7
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 3.0e-131 472.6 408 64.5
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 3.9e-131 472.2 402 71.4
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 3.3e-130 469.2 418 68.4
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 9.5e-130 467.6 402 70.4
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 3.6e-129 465.7 392 67.6
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 2.3e-128 463.0 390 66.7
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 1.2e-127 460.7 397 63.7
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 2.0e-127 459.9 407 62.9
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 3.4e-127 459.1 383 67.9
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 5.8e-127 458.4 386 68.7
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 3.7e-126 455.7 380 67.9
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 8.3e-126 454.5 411 64.5
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 1.4e-125 453.8 409 63.1
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 1.4e-125 453.8 409 63.1
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.9e-125 453.4 391 65.2
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 3.2e-125 452.6 321 76.6
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 3.2e-125 452.6 395 68.4
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 4.1e-125 452.2 409 62.8
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 1.2e-124 450.7 410 65.9
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 1.6e-124 450.3 394 64.0
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 2.7e-124 449.5 386 64.5
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 6.0e-124 448.4 413 63.9
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 6.0e-124 448.4 413 63.9
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 7.8e-124 448.0 454 59.9
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 1.0e-123 447.6 395 60.0
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 1.7e-123 446.8 392 65.6
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 3.0e-123 446.0 405 61.7
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 3.0e-123 446.0 391 65.0
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 3.9e-123 445.7 414 63.5
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 1.1e-122 444.1 430 58.6
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 3.3e-122 442.6 405 60.0
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 4.3e-122 442.2 375 65.1
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 1.2e-121 440.7 356 69.4
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 1.2e-121 440.7 406 61.6
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 4.7e-121 438.7 392 65.8
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 1.1e-120 437.6 398 62.3
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.1e-120 437.6 323 71.5
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.4e-120 437.2 397 63.5
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 4.0e-120 435.6 382 68.3
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 5.2e-120 435.3 382 66.0
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 1.3e-118 430.6 423 60.3
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 1.1e-117 427.6 284 78.5
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 1.2e-116 424.1 389 60.4
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 1.6e-116 423.7 395 61.0
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 3.9e-115 419.1 409 59.9
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 5.1e-115 418.7 285 73.3
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 5.1e-115 418.7 390 60.5
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 8.6e-115 417.9 291 72.9
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 1.5e-114 417.2 292 80.5
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 6.9e-112 408.3 408 62.3
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 6.9e-112 408.3 300 70.7
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 1.2e-111 407.5 216 92.1
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 6.4e-110 401.7 395 61.3
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 2.7e-108 396.4 396 62.1
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 1.7e-107 393.7 292 71.9
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 2.5e-106 389.8 280 72.1
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 3.3e-106 389.4 406 54.7
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 1.3e-105 387.5 282 74.5
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 3.6e-105 386.0 308 67.5
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 2.4e-104 383.3 302 67.2
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 9.3e-101 371.3 282 67.0
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 1.9e-93 347.1 284 69.7
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 6.7e-91 338.6 249 71.9
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 6.7e-91 338.6 423 48.0
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 8.7e-91 338.2 214 78.0
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 9.6e-90 334.7 281 65.8
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 1.6e-89 334.0 407 53.6
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 2.9e-86 323.2 384 51.0
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 1.1e-85 321.2 266 61.7
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 1.1e-85 321.2 246 71.5
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 7.1e-85 318.5 388 51.0
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.0e-83 314.7 336 55.4
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 2.0e-79 300.4 254 66.5
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 4.2e-77 292.7 199 74.9
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 1.2e-68 264.6 154 83.1
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 7.9e-68 261.9 140 90.0
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 8.5e-62 241.9 274 48.5
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 2.1e-60 237.3 197 57.9
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 2.1e-60 237.3 312 49.7
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 3.0e-59 233.4 255 54.5
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 8.0e-44 182.2 200 46.5
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 1.3e-41 174.9 227 41.4
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 4.5e-31 139.8 194 38.7
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 2.3e-30 137.5 170 54.7
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 3.8e-30 136.7 147 56.5
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 1.8e-19 101.3 65 78.5
Cpa.g.sc48.16 Carica papaya HOM05D006305 ORTHO05D007984 4.0e-11 73.6 92 43.5
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 8.9e-11 72.4 168 33.3
MBI04_g33407_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 3.2e-08 63.9 132 40.2
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 2.1e-07 61.2 99 40.4


User provided reference genes

Program Settings