Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 2.0e-266 922.2 560 100.0
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 4.9e-225 784.6 422 87.0
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.9e-224 782.7 436 84.2
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 7.8e-223 777.3 425 85.2
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 1.5e-221 773.1 423 85.3
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 1.9e-221 772.7 425 84.9
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 3.3e-221 771.9 422 83.9
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 5.6e-221 771.2 425 85.2
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 7.3e-221 770.8 424 84.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 3.6e-220 768.5 424 84.0
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.2e-220 767.7 423 84.9
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 1.4e-219 766.5 422 85.1
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.2e-218 763.5 425 84.5
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.5e-218 763.1 421 83.8
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 3.4e-218 761.9 425 84.2
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 7.6e-218 760.8 426 82.9
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 7.6e-218 760.8 426 84.7
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.3e-217 760.0 425 83.8
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.3e-217 760.0 425 84.5
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 3.8e-217 758.4 427 83.8
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 4.9e-217 758.1 423 82.7
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 4.9e-217 758.1 424 83.0
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.4e-216 756.5 424 82.8
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 2.4e-216 755.7 425 84.0
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 7.1e-216 754.2 439 81.3
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 7.1e-216 754.2 422 84.1
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 9.3e-216 753.8 430 82.8
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 9.3e-216 753.8 430 82.8
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.0e-214 750.4 425 83.3
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 6.6e-214 747.7 431 82.4
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.1e-213 746.9 421 82.7
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.5e-213 746.5 424 83.5
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 2.5e-213 745.7 421 81.7
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 2.5e-213 745.7 425 81.6
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.5e-213 745.7 425 81.6
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 3.3e-213 745.3 419 82.3
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 4.3e-213 745.0 425 83.3
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 4.3e-213 745.0 423 81.6
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 5.6e-213 744.6 419 82.3
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 9.6e-213 743.8 427 81.5
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.6e-212 743.0 425 83.3
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.8e-212 741.5 425 83.1
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 4.8e-212 741.5 422 82.2
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 8.1e-212 740.7 425 82.8
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.1e-211 740.3 426 83.1
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 1.1e-211 740.3 422 82.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 2.4e-211 739.2 420 81.7
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 4.0e-211 738.4 440 80.2
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 2.0e-210 736.1 426 82.6
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 4.9e-209 731.5 461 77.0
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.9e-209 731.5 423 82.5
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 7.1e-208 727.6 423 82.3
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.0e-206 723.8 431 81.2
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.5e-205 719.2 467 74.1
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.6e-204 716.5 426 81.2
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 6.2e-204 714.5 395 84.6
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.1e-203 713.8 425 80.7
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 2.4e-203 712.6 420 81.2
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 5.3e-203 711.4 423 79.0
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.2e-202 710.3 397 83.1
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.3e-201 706.8 432 79.2
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.9e-201 704.9 451 75.4
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 8.4e-201 704.1 416 79.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 9.3e-200 700.7 461 73.3
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.6e-199 699.9 426 79.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.6e-199 698.4 436 76.1
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 7.9e-199 697.6 428 79.4
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.3e-198 696.8 428 79.4
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.9e-197 693.0 422 77.5
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 8.2e-196 687.6 427 76.8
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 5.8e-194 681.4 428 75.9
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 5.1e-190 668.3 421 75.1
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 5.1e-190 668.3 391 79.8
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 7.4e-189 664.5 427 74.2
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.6e-188 663.3 422 74.2
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 6.3e-188 661.4 350 88.9
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 2.4e-187 659.4 425 74.1
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.5e-186 656.8 426 73.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 4.5e-186 655.2 424 74.8
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 2.2e-185 652.9 420 74.0
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 6.5e-185 651.4 430 72.8
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 5.5e-184 648.3 425 72.9
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 4.6e-183 645.2 419 74.5
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 7.9e-183 644.4 436 72.7
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.3e-182 643.7 436 72.7
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.3e-182 643.7 424 72.6
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 6.7e-182 641.3 439 71.3
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 5.7e-181 638.3 423 73.3
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 6.3e-180 634.8 395 76.5
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 8.2e-180 634.4 422 71.3
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.1e-179 632.5 425 71.8
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 6.9e-179 631.3 377 79.3
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 2.0e-178 629.8 427 71.9
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.6e-178 629.4 387 78.6
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.7e-177 626.7 433 70.9
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.0e-174 617.5 422 71.6
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.8e-172 609.4 391 74.2
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.7e-172 609.0 425 70.6
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.1e-171 605.9 421 68.4
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 6.9e-171 604.7 426 68.1
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.4e-168 597.0 390 73.8
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.5e-168 596.3 396 72.2
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 3.2e-168 595.9 371 76.5
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 3.3e-165 585.9 447 66.7
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.2e-164 583.2 425 65.2
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.9e-160 570.1 315 85.7
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 6.7e-158 561.6 342 76.3
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.1e-155 554.3 305 83.3
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 5.9e-154 548.5 322 78.3
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 7.8e-138 495.0 338 70.7
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.4e-134 484.2 433 61.4
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 3.7e-132 476.1 310 73.5
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 7.0e-131 471.9 292 75.3
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.5e-128 464.2 450 52.9
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 6.2e-127 458.8 450 53.1
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 2.7e-122 443.4 328 65.2
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 5.6e-120 435.6 354 59.3
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 5.4e-115 419.1 328 62.2
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 2.6e-109 400.2 218 83.5
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 7.6e-109 398.7 325 55.1
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 3.1e-102 376.7 191 91.1
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 5.6e-96 355.9 428 47.7
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 2.8e-87 327.0 230 70.4
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.2e-85 321.6 259 62.5
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 6.9e-70 269.2 262 56.5
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.0e-61 241.1 158 76.6
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 5.9e-53 213.0 114 87.7
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 5.5e-51 206.5 136 77.2
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 1.9e-43 181.4 170 59.4
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 9.7e-40 169.1 108 75.9
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 2.7e-37 161.0 317 34.4
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 4.5e-29 133.7 77 75.3
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.9e-27 128.3 279 33.7
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.8e-26 124.4 70 82.9
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 2.2e-23 114.8 320 29.7
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.3e-20 104.8 80 63.8
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.2e-15 88.2 52 73.1
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 3.3e-11 74.3 90 48.9
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.1e-09 67.8 29 93.1
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 4.9e-07 60.5 28 92.9
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 6.4e-07 60.1 52 57.7
Haze_00507 Corylus avellana HOM05D005781 ORTHO05D165033 4.1e-06 57.4 29 82.8


User provided reference genes

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