Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1359.0 706 100.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1216.8 708 88.0
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1214.5 700 89.3
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1213.7 708 87.6
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1212.2 708 87.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1210.7 706 86.7
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1206.8 698 88.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1206.4 699 87.8
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1203.3 708 87.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1202.6 699 87.8
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 708 87.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 699 88.1
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1201.4 708 87.7
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1198.3 706 87.3
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1189.9 708 86.3
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1188.7 692 87.6
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1187.9 693 87.9
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 688 88.2
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1184.5 708 85.0
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1182.5 708 85.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1182.2 708 85.2
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1181.0 708 85.5
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1179.9 708 85.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1179.5 708 85.3
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 701 86.2
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1176.8 699 86.0
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1174.1 708 84.5
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1173.3 708 84.2
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1172.5 688 87.2
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 687 86.9
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 687 86.9
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 687 86.9
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 708 85.7
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1172.1 704 85.5
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 715 84.5
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 697 84.6
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 697 85.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1164.8 690 86.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1161.4 690 86.4
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 731 82.6
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 714 84.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1157.5 706 83.9
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1157.1 696 84.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1156.7 671 88.4
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 703 85.1
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1156.4 710 83.8
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1154.4 700 83.3
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1153.3 688 85.9
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 736 80.7
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 688 85.5
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 700 82.0
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 700 82.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 700 82.0
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 688 85.0
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 691 85.8
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1145.6 709 82.8
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 688 84.9
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 700 82.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 700 82.0
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 700 81.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 700 81.7
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 689 84.8
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 691 84.2
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 700 81.7
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 701 81.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1140.9 691 84.2
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 700 81.9
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 685 85.7
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 703 83.9
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1139.4 705 83.8
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 687 85.2
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 691 83.8
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1135.9 723 81.2
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 693 84.7
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1133.2 721 82.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 697 82.6
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 708 81.9
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1128.2 693 83.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 696 82.0
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1126.3 690 83.0
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1125.9 708 80.6
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 686 84.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 705 83.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1122.8 700 80.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 688 82.3
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 668 85.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 740 77.4
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1105.5 694 81.0
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 781 75.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1096.6 696 79.6
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1088.9 669 82.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1087.8 718 79.2
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1085.9 742 75.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1076.2 697 78.0
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 2.8e-310 1068.1 740 75.7
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.5e-306 1055.0 666 82.3
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.1e-303 1046.2 687 77.4
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.4e-301 1039.3 716 75.4
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.9e-295 1018.8 746 70.2
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.1e-282 976.5 591 83.6
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.4e-282 976.1 629 78.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.5e-282 974.2 631 81.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.4e-277 958.7 689 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.4e-277 958.7 689 69.7
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 9.1e-277 956.8 700 68.6
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 8.0e-273 943.7 691 69.2
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.1e-271 939.9 584 81.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 1.2e-268 929.9 700 67.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.8e-264 916.0 683 72.5
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.0e-259 900.2 554 82.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 3.2e-258 895.2 566 79.5
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 3.0e-256 888.6 514 89.1
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.4e-253 879.0 589 76.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.3e-250 868.6 675 69.5
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.1e-241 839.3 491 87.6
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.9e-227 792.0 680 58.4
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 6.8e-216 754.6 675 56.0
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 7.3e-202 708.0 470 80.9
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 9.9e-199 697.6 423 82.0
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 4.2e-157 559.3 733 43.9
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 5.7e-154 548.9 328 82.0
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 4.5e-143 512.7 754 38.5
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 3.4e-130 469.9 280 83.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.9e-125 454.1 270 82.6
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.8e-123 447.6 269 84.0
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.7e-121 441.0 359 63.5
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 9.2e-112 408.7 744 35.5
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-111 408.3 261 83.9
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-110 404.4 237 85.2
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 2.5e-109 400.6 253 79.8
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.8e-108 397.1 233 82.4
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.3e-107 394.0 252 82.9
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.8e-76 290.8 193 82.9
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.8e-76 290.8 181 76.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.8e-75 288.1 215 68.4
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.0e-70 272.3 148 86.5
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.7e-65 255.0 195 69.2
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 4.3e-61 240.4 155 69.0
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.3e-60 238.8 192 71.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 9.4e-56 222.6 180 69.4
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 9.4e-56 222.6 214 59.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.6e-55 221.9 167 68.9
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 2.6e-53 214.5 156 69.2
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 4.5e-50 203.8 486 29.4
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.3e-49 202.2 114 92.1
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.7e-49 201.8 122 84.4
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 8.2e-44 183.0 111 88.3
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 5.9e-42 176.8 104 82.7
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.0e-38 164.5 111 73.9
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 8.8e-30 136.3 151 55.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 3.4e-29 134.4 100 69.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.3e-28 132.5 73 90.4
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.4e-27 128.3 100 67.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.4e-27 128.3 100 67.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.0e-25 122.9 75 82.7
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.7e-25 122.1 119 57.1
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.7e-23 114.8 81 71.6
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 4.0e-22 110.9 63 85.7
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.8e-21 106.3 57 89.5
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 2.8e-20 104.8 59 88.1
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 6.3e-20 103.6 90 64.4
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.6e-18 99.0 69 66.7
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.9e-17 94.7 93 57.0
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.1e-16 92.8 65 75.4
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.8e-14 85.5 59 72.9
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.7e-12 77.8 61 65.6
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 5.4e-11 73.9 78 48.7
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 7.8e-10 70.1 54 63.0
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.0e-09 69.7 40 82.5
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 5.2e-06 57.4 64 54.7


User provided reference genes

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