Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 0.0e+00 1271.9 644 100.0
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 2.8e-216 755.7 679 61.4
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 6.2e-216 754.6 677 62.0
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 5.3e-215 751.5 668 62.3
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 2.7e-211 739.2 676 59.8
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 1.3e-210 736.9 682 59.8
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 3.3e-209 732.3 664 61.1
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 2.8e-208 729.2 674 59.5
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 6.3e-208 728.0 678 60.5
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 2.6e-206 722.6 676 58.9
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 7.7e-206 721.1 673 60.8
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 1.3e-205 720.3 672 60.0
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.3e-205 720.3 688 58.7
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 5.0e-205 718.4 676 58.4
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.2e-203 713.8 682 58.9
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 2.1e-203 713.0 671 59.2
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 3.6e-203 712.2 669 59.2
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 1.0e-202 710.7 643 59.6
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 2.3e-202 709.5 654 60.7
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.9e-201 706.4 666 60.2
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 3.4e-198 695.7 650 58.9
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 2.9e-197 692.6 669 56.7
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 6.5e-197 691.4 674 58.3
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 5.5e-196 688.3 643 58.8
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.2e-195 687.2 717 55.4
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.6e-195 686.8 692 55.1
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 2.1e-195 686.4 652 58.0
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 3.0e-194 682.6 706 54.4
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 6.7e-194 681.4 678 56.6
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 1.5e-193 680.2 640 58.1
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.0e-193 679.9 673 57.1
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 3.3e-193 679.1 675 58.5
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.7e-192 676.8 697 55.5
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.8e-192 676.0 641 57.7
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.1e-191 674.1 682 57.9
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.4e-191 673.7 681 56.4
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 2.0e-190 669.8 655 57.7
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.2e-188 662.1 675 57.3
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 9.4e-188 661.0 682 54.1
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.6e-187 660.2 675 57.0
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.6e-187 660.2 700 55.4
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 6.1e-187 658.3 683 54.5
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 9.7e-185 651.0 671 55.6
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.3e-184 650.6 720 53.5
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 7.0e-183 644.8 598 60.4
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 7.7e-182 641.3 673 54.1
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.5e-180 637.1 660 54.8
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.9e-180 636.7 670 53.3
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.5e-180 636.3 660 54.8
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 5.5e-180 635.2 737 50.1
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 7.2e-180 634.8 636 56.6
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.2e-179 634.0 676 52.7
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.2e-179 634.0 663 53.5
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 2.1e-179 633.3 665 53.7
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 1.8e-178 630.2 678 53.1
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 2.3e-178 629.8 657 54.3
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 2.3e-178 629.8 657 54.3
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 2.3e-178 629.8 657 54.3
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 2.6e-177 626.3 652 54.9
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 1.4e-175 620.5 655 53.6
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.4e-175 620.5 669 52.8
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.0e-173 614.4 614 57.2
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 2.9e-173 612.8 654 52.0
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 8.0e-171 604.7 667 52.5
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 1.4e-170 604.0 683 50.7
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 1.4e-170 604.0 621 55.9
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 5.7e-169 598.6 591 57.5
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.7e-168 597.0 842 45.1
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 3.7e-168 595.9 674 51.6
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 3.1e-167 592.8 637 52.6
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 1.2e-166 590.9 639 53.7
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 2.0e-166 590.1 560 60.0
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 5.5e-164 582.0 635 50.7
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 8.9e-162 574.7 636 51.7
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 2.0e-161 573.5 649 52.5
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.6e-161 573.2 649 51.3
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 2.2e-160 570.1 638 51.4
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.4e-159 567.4 645 51.9
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 5.4e-159 565.5 645 50.2
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 6.6e-157 558.5 622 51.3
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 3.3e-156 556.2 639 50.1
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.2e-155 554.3 641 48.7
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 3.6e-155 552.7 598 54.3
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 6.1e-155 552.0 668 51.5
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 8.3e-152 541.6 569 55.2
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 4.7e-147 525.8 609 51.2
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 1.1e-146 524.6 547 56.1
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 1.1e-146 524.6 667 45.6
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 1.6e-139 500.7 567 51.7
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.7e-136 490.7 526 54.6
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 3.3e-124 449.9 475 53.9
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 2.4e-122 443.7 668 42.1
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 9.0e-122 441.8 473 53.3
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.9e-119 434.1 643 41.2
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.6e-118 431.0 508 51.4
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 6.0e-118 429.1 615 44.9
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 2.1e-115 420.6 641 40.4
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 9.0e-114 415.2 651 40.6
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 7.4e-108 395.6 552 44.4
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 4.3e-100 369.8 457 50.3
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.5e-92 344.0 739 36.7
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 2.6e-89 334.0 493 43.4
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.7e-88 331.3 222 70.7
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 6.5e-88 329.3 222 72.5
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 4.3e-84 316.6 465 43.9
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 1.0e-80 305.4 637 34.7
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.4e-77 295.0 221 67.9
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 8.8e-77 292.4 547 39.3
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.0e-76 291.2 241 64.7
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.1e-70 271.2 909 28.2
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.2e-64 251.1 171 70.2
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 2.6e-60 237.7 167 70.1
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 1.8e-58 231.5 164 70.7
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 7.2e-55 219.5 146 74.7
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.6e-52 211.1 135 76.3
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 3.7e-51 207.2 303 47.2
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 8.3e-51 206.1 152 67.8
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.7e-48 198.4 413 37.8
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 8.6e-48 196.1 166 61.4
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.0e-45 189.1 171 55.0
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.6e-44 184.5 146 67.8
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.7e-43 180.6 176 56.8
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 4.1e-42 177.2 356 37.4
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 4.3e-39 167.2 143 58.0
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 4.7e-38 163.7 139 58.3
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 6.1e-38 163.3 190 50.5
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 8.0e-38 162.9 146 59.6
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 2.7e-33 147.9 163 50.3
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 3.5e-33 147.5 319 32.6
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.3e-32 145.6 105 66.7
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 5.0e-32 143.7 123 60.2
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 4.4e-28 130.6 249 36.5
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 3.5e-25 120.9 298 29.5
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 4.6e-25 120.6 252 39.3
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 1.2e-22 112.5 144 44.4
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 3.6e-22 110.9 100 57.0
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 6.8e-21 106.7 151 46.4
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.1e-18 99.4 91 57.1
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 1.4e-18 99.0 169 35.5
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 7.8e-17 93.2 55 76.4
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 5.6e-15 87.0 55 69.1
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 6.2e-14 83.6 53 73.6
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 5.8e-12 77.0 84 45.2
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 1.7e-11 75.5 67 56.7
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 9.3e-10 69.7 154 35.7
SHI03977 Sapria himalayana HOM05D004944 ORTHO05D005989 1.5e-07 62.4 116 35.3


User provided reference genes

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