Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0241 Punica granatum HOM05D006635 ORTHO05D008047 1.1e-142 510.0 261 100.0
Eucgr.H03153 Eucalyptus grandis HOM05D006635 ORTHO05D008047 7.4e-99 364.4 263 71.1
Dinv29905 Davidia involucrata HOM05D006635 ORTHO05D008047 1.8e-92 343.2 264 69.3
CSS0008878 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 1.4e-89 333.6 258 65.9
Hma1.2p1_0650F.1_g195460 Hydrangea macrophylla HOM05D006635 ORTHO05D008047 4.1e-89 332.0 243 70.4
Haze_11307 Corylus avellana HOM05D006635 ORTHO05D008047 5.9e-88 328.2 260 65.0
Ciclev10005690m.g Citrus clementina HOM05D006635 ORTHO05D008047 7.6e-88 327.8 264 64.4
Haze_11310 Corylus avellana HOM05D006635 ORTHO05D008047 2.2e-87 326.2 260 64.6
GSVIVG01018125001 Vitis vinifera HOM05D006635 ORTHO05D008047 3.8e-87 325.5 259 65.6
PGR102G1543 Punica granatum HOM05D006635 ORTHO05D008047 5.0e-87 325.1 261 69.0
CiPaw.01G189900 Carya illinoinensis HOM05D006635 ORTHO05D008047 1.1e-86 323.9 258 68.2
TWI53G1330 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 7.2e-86 321.2 258 64.3
TWI53G1448 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 7.2e-86 321.2 258 64.3
Ciclev10005689m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.6e-85 320.1 260 65.0
Manes.15G037200 Manihot esculenta HOM05D006635 ORTHO05D008047 3.5e-85 318.9 260 64.6
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 3.0e-84 315.8 249 64.7
PGSC0003DMG400016282 Solanum tuberosum HOM05D006635 ORTHO05D008047 3.0e-84 315.8 244 65.6
Sopen06g018890 Solanum pennellii HOM05D006635 ORTHO05D008047 3.9e-84 315.5 258 62.4
Prupe.1G031500 Prunus persica HOM05D006635 ORTHO05D008047 1.5e-83 313.5 253 63.2
RcHm_v2.0_Chr1g0323991 Rosa chinensis HOM05D006635 ORTHO05D008047 1.5e-83 313.5 253 63.6
Atru.chr4.2211 Acer truncatum HOM05D006635 ORTHO05D008047 2.5e-83 312.8 260 61.9
Nn1g02620 Nelumbo nucifera HOM05D006635 ORTHO05D008047 4.3e-83 312.0 286 57.7
Nitab4.5_0000302g0050 Nicotiana tabacum HOM05D006635 ORTHO05D008047 4.3e-83 312.0 268 61.2
Potri.010G075900 Populus trichocarpa HOM05D006635 ORTHO05D008047 4.3e-83 312.0 260 63.5
CANSAT78G1035 Cannabis sativa HOM05D006635 ORTHO05D008047 5.7e-83 311.6 256 62.9
Gohir.D10G153800 Gossypium hirsutum HOM05D006635 ORTHO05D008047 7.4e-83 311.2 260 61.9
Gorai.011G171700 Gossypium raimondii HOM05D006635 ORTHO05D008047 7.4e-83 311.2 260 61.9
Solyc06g053770.4 Solanum lycopersicum HOM05D006635 ORTHO05D008047 7.4e-83 311.2 255 62.7
Ciclev10007171m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.6e-82 310.1 239 66.5
CAN.G118.6 Capsicum annuum HOM05D006635 ORTHO05D008047 2.8e-82 309.3 264 60.6
MD13G1208000 Malus domestica HOM05D006635 ORTHO05D008047 4.8e-82 308.5 253 62.8
Aqoxy5G00314 Aquilegia oxysepala HOM05D006635 ORTHO05D008047 6.3e-82 308.1 258 62.0
Cc03_g04920 Coffea canephora HOM05D006635 ORTHO05D008047 6.3e-82 308.1 264 62.1
Thecc.04G246700 Theobroma cacao HOM05D006635 ORTHO05D008047 6.3e-82 308.1 262 62.6
Gohir.A10G113600 Gossypium hirsutum HOM05D006635 ORTHO05D008047 1.4e-81 307.0 260 61.5
FvH4_2g07190 Fragaria vesca HOM05D006635 ORTHO05D008047 1.8e-81 306.6 253 61.7
COL.COLO4_15799 Corchorus olitorius HOM05D006635 ORTHO05D008047 2.4e-81 306.2 228 66.2
FAN24G3344 Fragaria x ananassa HOM05D006635 ORTHO05D008047 2.4e-81 306.2 253 61.7
Actinidia08441 Actinidia chinensis HOM05D006635 ORTHO05D008047 4.1e-81 305.4 253 64.0
FAN20G2319 Fragaria x ananassa HOM05D006635 ORTHO05D008047 4.5e-80 302.0 253 60.9
Oeu058885.1 Olea europaea HOM05D006635 ORTHO05D008047 1.0e-79 300.8 274 57.7
PSO832G2723 Papaver somniferum HOM05D006635 ORTHO05D008047 1.0e-79 300.8 257 59.5
PSO210G4915 Papaver somniferum HOM05D006635 ORTHO05D008047 1.7e-79 300.1 257 59.1
Cpa.g.sc58.53 Carica papaya HOM05D006635 ORTHO05D008047 5.0e-79 298.5 226 67.3
Lj6A657T45 Lonicera japonica HOM05D006635 ORTHO05D008047 5.0e-79 298.5 262 58.8
Sc19g0003750 Simmondsia chinensis HOM05D006635 ORTHO05D008047 8.5e-79 297.7 257 59.1
Sc19g0005210 Simmondsia chinensis HOM05D006635 ORTHO05D008047 3.2e-78 295.8 257 58.8
vmacro15410 Vaccinium macrocarpon HOM05D006635 ORTHO05D008047 3.2e-78 295.8 307 55.7
ClCG09G015590 Citrullus lanatus HOM05D006635 ORTHO05D008047 9.4e-78 294.3 245 61.2
Sed0017322 Sechium edule HOM05D006635 ORTHO05D008047 1.6e-77 293.5 232 62.5
CsaV3_7G006710 Cucumis sativus L. HOM05D006635 ORTHO05D008047 2.1e-77 293.1 232 62.1
Migut.G00439 Erythranthe guttata HOM05D006635 ORTHO05D008047 6.1e-77 291.6 258 58.1
THA.LOC104808600 Tarenaya hassleriana HOM05D006635 ORTHO05D008047 1.0e-76 290.8 258 60.1
MELO3C018624.2 Cucumis melo HOM05D006635 ORTHO05D008047 1.8e-76 290.0 238 61.8
Lalb_Chr02g0150381 Lupinus albus HOM05D006635 ORTHO05D008047 6.7e-76 288.1 258 58.5
DCAR_027282 Daucus carota HOM05D006635 ORTHO05D008047 8.8e-76 287.7 232 61.2
Nitab4.5_0008721g0010 Nicotiana tabacum HOM05D006635 ORTHO05D008047 8.8e-76 287.7 259 60.2
Lj5g0017333 Lotus japonicus HOM05D006635 ORTHO05D008047 1.1e-75 287.3 258 58.1
HanXRQChr13g0424511 Helianthus annuus HOM05D006635 ORTHO05D008047 1.5e-75 287.0 255 57.6
arahy.Tifrunner.gnm1.ann1.20YP49 Arachis hypogaea HOM05D006635 ORTHO05D008047 2.5e-75 286.2 257 58.4
AUR62002251 Chenopodium quinoa HOM05D006635 ORTHO05D008047 2.5e-75 286.2 234 62.4
arahy.Tifrunner.gnm1.ann1.P8HXAC Arachis hypogaea HOM05D006635 ORTHO05D008047 3.3e-75 285.8 257 58.0
Psat4g107880 Pisum sativum HOM05D006635 ORTHO05D008047 4.3e-75 285.4 263 58.2
Medtr1g075330 Medicago truncatula HOM05D006635 ORTHO05D008047 9.7e-75 284.3 258 60.5
MSTRG.4101 Avicennia marina HOM05D006635 ORTHO05D008047 3.7e-74 282.3 215 64.7
Ca_09839_v3 Cicer arietinum L. HOM05D006635 ORTHO05D008047 1.1e-73 280.8 247 58.7
PGR083G1020 Punica granatum HOM05D006635 ORTHO05D008047 1.1e-73 280.8 261 62.1
QL06p015844 Quercus lobata HOM05D006635 ORTHO05D008047 1.8e-73 280.0 353 46.5
AL3G37550 Arabidopsis lyrata HOM05D006635 ORTHO05D008047 3.1e-73 279.3 255 56.5
FAN27G3431 Fragaria x ananassa HOM05D006635 ORTHO05D008047 3.1e-73 279.3 279 54.1
HPP92_023529 Vanilla planifolia HOM05D006635 ORTHO05D008047 4.1e-73 278.9 260 55.8
Ah.13g066120 Amaranthus hybridus HOM05D006635 ORTHO05D008047 7.7e-72 274.6 226 58.8
PGR004G0922 Punica granatum HOM05D006635 ORTHO05D008047 1.0e-71 274.2 159 85.5
Carub.0003s2327 Capsella rubella HOM05D006635 ORTHO05D008047 2.9e-71 272.7 257 54.9
CDE04G0173 Ceratophyllum demersum HOM05D006635 ORTHO05D008047 5.0e-71 271.9 250 57.6
Hund11856 Selenicereus undatus HOM05D006635 ORTHO05D008047 5.0e-71 271.9 255 56.9
ECA240G1129 Erigeron canadensis HOM05D000856 ORTHO05D002253 1.9e-70 270.0 256 55.9
Sp3g20780 Schrenkiella parvula HOM05D006635 ORTHO05D008047 2.5e-70 269.6 261 54.4
CARHR099010 Cardamine hirsuta HOM05D006635 ORTHO05D008047 9.4e-70 267.7 255 55.7
Duzib151G0047 Durio zibethinus HOM05D006635 ORTHO05D008047 9.4e-70 267.7 254 58.3
Peaxi162Scf00325g00713 Petunia axillaris HOM05D006635 ORTHO05D008047 9.4e-70 267.7 269 54.3
CSS0031458 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 1.2e-69 267.3 284 53.9
Os03g0740800 Oryza sativa ssp. japonica HOM05D006635 ORTHO05D008047 4.7e-69 265.4 262 53.1
AT3G23100 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 6.1e-69 265.0 255 52.9
Zm00001eb056730 Zea mays HOM05D006635 ORTHO05D008047 1.8e-68 263.5 202 63.9
Glyma.10G184800 Glycine max HOM05D006635 ORTHO05D008047 3.3e-67 259.2 249 56.2
BcaB04g20471 Brassica carinata HOM05D006635 ORTHO05D008047 4.4e-67 258.8 199 62.3
Phvul.007G125600 Phaseolus vulgaris HOM05D006635 ORTHO05D008047 2.8e-66 256.1 257 53.7
BcaC09g49245 Brassica carinata HOM05D006635 ORTHO05D008047 3.7e-66 255.8 258 53.1
ATR0824G049 Amborella trichopoda HOM05D006635 ORTHO05D008047 1.1e-65 254.2 230 56.5
A01p31980 Brassica napus HOM05D006635 ORTHO05D008047 1.1e-65 254.2 216 58.8
BraA01t03324Z Brassica rapa HOM05D006635 ORTHO05D008047 1.1e-65 254.2 216 58.8
Glyma.20G205600 Glycine max HOM05D006635 ORTHO05D008047 3.1e-65 252.7 263 53.2
EL10Ac3g05891 Beta vulgaris HOM05D006635 ORTHO05D008047 9.4e-62 241.1 259 50.6
VMungo0720G1578 Vigna mungo HOM05D006635 ORTHO05D008047 1.4e-60 237.3 252 52.4
Aa31LG8G9580 Aethionema arabicum HOM05D006635 ORTHO05D008047 1.8e-60 236.9 278 51.1
BolC1t04048H Brassica oleracea HOM05D006635 ORTHO05D008047 5.2e-60 235.3 181 61.3
Thhalv10022194m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 1.1e-57 227.6 262 48.9
Sabra10G0032800 Salix brachista HOM05D006635 ORTHO05D008047 4.1e-57 225.7 453 36.0
Lsat_1_v5_gn_3_122920 Lactuca sativa HOM05D006635 ORTHO05D008047 1.7e-55 220.3 211 55.5
MBI19_g38372_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 7.7e-48 194.9 259 45.9
C01p40990 Brassica napus HOM05D006635 ORTHO05D008047 1.2e-45 187.6 140 60.7
Mapoly0014s0074 Marchantia polymorpha HOM05D006635 ORTHO05D008047 8.8e-44 181.4 227 40.1
TAR636G2119 Trochodendron aralioides HOM05D006635 ORTHO05D008047 2.1e-37 160.2 98 70.4
AagrBONN_evm.TU.Sc2ySwM_228.5661 Anthoceros agrestis HOM05D006635 ORTHO05D008047 2.4e-33 146.7 242 35.1
AUR62015462 Chenopodium quinoa HOM05D006635 ORTHO05D008047 6.6e-31 138.7 155 52.3
TPR.G27195 Trifolium pratense HOM05D006635 ORTHO05D008047 2.1e-29 133.7 98 60.2
Ciclev10029925m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.3e-26 124.4 137 47.4
TAR636G0517 Trochodendron aralioides HOM05D006635 ORTHO05D008047 7.0e-25 118.6 117 61.5
MBI19_g44428_MAGBIO Magnolia biondii HOM05D006635 ORTHO05D008047 1.1e-22 111.3 132 49.2
Pp3c14_21160 Physcomitrium patens HOM05D006635 ORTHO05D008047 4.3e-22 109.4 208 31.2
Pp3c1_38430 Physcomitrium patens HOM05D006635 ORTHO05D008047 1.2e-19 101.3 253 28.1
SEGI_02340 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 1.3e-18 97.8 83 62.7
CBR_g33918 Chara braunii HOM05D006635 ORTHO05D008047 1.1e-17 94.7 178 35.4
AT1G61410 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 1.9e-17 94.0 126 50.0
SEGI_11171 Sequoiadendron giganteum HOM05D006635 ORTHO05D008047 1.6e-16 90.9 93 44.1
Oeu058884.1 Olea europaea HOM05D001680 ORTHO05D001596 3.5e-16 89.7 89 57.3
C01p40960 Brassica napus HOM05D006635 ORTHO05D008047 1.8e-12 77.4 88 52.3
Thhalv10021924m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 7.6e-11 72.0 59 61.0
Pp3c10_9830 Physcomitrium patens HOM05D000160 ORTHO05D000496 4.6e-08 62.8 140 27.9
Pp3c13_7410 Physcomitrium patens HOM05D000160 ORTHO05D000496 3.9e-07 59.7 163 25.8
C01p40970 Brassica napus HOM05D006635 ORTHO05D008047 1.9e-06 57.4 58 43.1


User provided reference genes

Program Settings