Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.8e-41 170.6 81 100.0
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.1e-13 79.7 62 61.3
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 1.9e-13 79.0 56 67.9
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.7e-12 74.3 62 61.3
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 1.4e-11 72.8 62 59.7
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.4e-11 72.8 62 59.7
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 2.3e-11 72.0 40 80.0
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 3.1e-11 71.6 40 80.0
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 3.1e-11 71.6 40 80.0
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 3.1e-11 71.6 40 80.0
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 3.1e-11 71.6 62 59.7
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 4.0e-11 71.2 42 76.2
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 4.0e-11 71.2 40 80.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 4.0e-11 71.2 40 80.0
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 4.0e-11 71.2 40 80.0
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 5.2e-11 70.9 40 77.5
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 6.8e-11 70.5 62 59.7
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 6.8e-11 70.5 62 58.1
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 8.9e-11 70.1 62 58.1
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.2e-10 69.7 40 77.5
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.2e-10 69.7 40 77.5
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 1.2e-10 69.7 40 77.5
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.2e-10 69.7 42 73.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.2e-10 69.7 42 71.4
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 1.2e-10 69.7 37 83.8
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.2e-10 69.7 62 58.1
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.2e-10 69.7 62 58.1
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.2e-10 69.7 40 77.5
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.2e-10 69.7 37 83.8
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.5e-10 69.3 40 77.5
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.5e-10 69.3 62 56.5
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.5e-10 69.3 40 77.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.5e-10 69.3 40 77.5
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.5e-10 69.3 40 77.5
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 2.0e-10 68.9 40 77.5
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.0e-10 68.9 40 77.5
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 2.6e-10 68.6 62 56.5
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.6e-10 68.6 40 75.0
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.6e-10 68.6 37 81.1
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.6e-10 68.6 37 81.1
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 2.6e-10 68.6 40 72.5
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 2.6e-10 68.6 37 81.1
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.6e-10 68.6 62 56.5
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 2.6e-10 68.6 37 81.1
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 2.6e-10 68.6 37 81.1
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 2.6e-10 68.6 37 81.1
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 3.4e-10 68.2 40 75.0
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 3.4e-10 68.2 40 75.0
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 3.4e-10 68.2 40 75.0
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 3.4e-10 68.2 40 75.0
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 3.4e-10 68.2 40 75.0
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 3.4e-10 68.2 40 75.0
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 3.4e-10 68.2 40 75.0
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 4.4e-10 67.8 63 50.8
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 4.4e-10 67.8 40 72.5
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 4.4e-10 67.8 40 75.0
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 5.8e-10 67.4 62 54.8
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.8e-10 67.4 62 54.8
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 5.8e-10 67.4 62 54.8
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 5.8e-10 67.4 62 54.8
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 5.8e-10 67.4 62 54.8
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 5.8e-10 67.4 62 54.8
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 5.8e-10 67.4 60 56.7
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 7.5e-10 67.0 63 54.0
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 7.5e-10 67.0 62 53.2
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 7.5e-10 67.0 62 54.8
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 7.5e-10 67.0 40 72.5
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 7.5e-10 67.0 62 56.5
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 7.5e-10 67.0 62 54.8
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 7.5e-10 67.0 40 72.5
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 7.5e-10 67.0 62 54.8
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 7.5e-10 67.0 40 75.0
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 7.5e-10 67.0 36 83.3
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 7.5e-10 67.0 40 75.0
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 9.9e-10 66.6 40 72.5
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 9.9e-10 66.6 40 72.5
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 9.9e-10 66.6 37 81.1
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 9.9e-10 66.6 40 72.5
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 9.9e-10 66.6 62 54.8
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.3e-09 66.2 40 72.5
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 1.3e-09 66.2 36 80.6
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.3e-09 66.2 40 72.5
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 1.7e-09 65.9 62 53.2
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.7e-09 65.9 56 62.5
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.7e-09 65.9 40 70.0
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.2e-09 65.5 40 72.5
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.9e-09 65.1 59 55.9
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 2.9e-09 65.1 62 54.8
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 3.7e-09 64.7 58 60.3
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 3.7e-09 64.7 40 72.5
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 3.7e-09 64.7 40 72.5
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 3.7e-09 64.7 40 70.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 3.7e-09 64.7 37 75.7
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 3.7e-09 64.7 37 75.7
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 3.7e-09 64.7 37 75.7
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 3.7e-09 64.7 40 72.5
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 6.4e-09 63.9 37 78.4
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 6.4e-09 63.9 62 53.2
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 6.4e-09 63.9 62 53.2
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 6.4e-09 63.9 62 53.2
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 6.4e-09 63.9 37 75.7
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.3e-09 63.5 40 67.5
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 8.3e-09 63.5 37 73.0
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.1e-08 63.2 37 73.0
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.4e-08 62.8 37 73.0
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.9e-08 62.4 37 73.0
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.9e-08 62.4 37 75.7
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.9e-08 62.4 37 70.3
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 2.4e-08 62.0 37 70.3
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 2.4e-08 62.0 37 73.0
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 2.4e-08 62.0 35 77.1
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 3.2e-08 61.6 37 73.0
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 3.2e-08 61.6 37 73.0
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 7.1e-08 60.5 37 70.3
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 9.2e-08 60.1 37 70.3
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 9.2e-08 60.1 37 70.3
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 9.2e-08 60.1 37 70.3
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 9.2e-08 60.1 36 72.2
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 9.2e-08 60.1 33 78.8
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.2e-07 59.7 37 70.3
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.2e-07 59.7 62 50.0
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.2e-07 59.7 62 50.0
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.6e-07 59.3 37 70.3
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.6e-07 59.3 37 70.3
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.6e-07 59.3 37 70.3
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.1e-07 58.9 37 67.6
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.1e-07 58.9 32 81.2
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.1e-07 58.9 37 67.6
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 2.1e-07 58.9 37 67.6
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 2.7e-07 58.5 37 67.6
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.7e-07 58.5 62 48.4
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.5e-07 58.2 42 57.1
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 3.0e-06 55.1 37 67.6
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 6.6e-06 53.9 39 64.1


User provided reference genes

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