Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 3.5e-272 941.0 483 100.0
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 1.1e-217 760.0 490 81.2
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 6.0e-171 604.7 472 64.8
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 3.0e-170 602.4 472 66.9
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 2.5e-169 599.4 472 66.3
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 2.5e-169 599.4 472 66.3
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.3e-169 599.0 472 66.1
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 9.6e-169 597.4 473 65.1
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 2.1e-168 596.3 472 65.7
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.5e-166 590.1 472 64.6
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 5.8e-166 588.2 471 64.5
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 5.8e-166 588.2 472 64.0
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 7.6e-166 587.8 472 65.5
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 7.1e-164 581.3 473 63.6
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 9.3e-164 580.9 472 63.3
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 1.2e-163 580.5 472 63.3
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 1.6e-163 580.1 472 64.4
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 2.1e-163 579.7 471 64.3
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 2.1e-163 579.7 472 63.1
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 2.7e-163 579.3 494 62.1
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 2.7e-163 579.3 472 63.6
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 2.7e-163 579.3 472 63.3
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 3.5e-163 578.9 471 64.3
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 3.5e-163 578.9 471 63.9
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.0e-163 578.2 472 64.2
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 7.8e-163 577.8 485 62.5
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 1.0e-162 577.4 472 63.3
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 3.0e-162 575.9 474 63.9
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 5.1e-162 575.1 472 62.9
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 5.1e-162 575.1 471 63.7
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 6.6e-162 574.7 473 63.0
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 6.6e-162 574.7 472 63.8
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 1.9e-161 573.2 472 63.1
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 1.9e-161 573.2 471 63.3
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 2.5e-161 572.8 472 62.9
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 2.5e-161 572.8 472 62.9
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 3.3e-161 572.4 472 62.9
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 3.3e-161 572.4 472 64.0
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 5.6e-161 571.6 474 62.2
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 9.6e-161 570.9 481 62.4
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 9.6e-161 570.9 474 62.9
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 9.6e-161 570.9 472 62.1
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 1.3e-160 570.5 472 62.7
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.3e-160 570.5 474 63.7
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 1.6e-160 570.1 472 62.9
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.6e-160 570.1 473 62.4
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 2.1e-160 569.7 472 63.6
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 2.1e-160 569.7 472 64.0
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 2.8e-160 569.3 472 62.9
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 3.6e-160 568.9 472 63.1
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 3.6e-160 568.9 472 62.9
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 6.2e-160 568.2 472 63.1
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 1.1e-159 567.4 471 62.4
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.1e-159 567.4 472 62.3
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 2.4e-159 566.2 485 61.6
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 2.4e-159 566.2 472 62.9
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 4.0e-159 565.5 472 62.9
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 1.2e-158 563.9 474 63.1
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 1.5e-158 563.5 475 61.1
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 1.4e-156 557.0 478 61.5
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 1.9e-156 556.6 479 62.6
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 2.4e-156 556.2 471 61.8
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 2.1e-155 553.1 453 63.4
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 3.5e-155 552.4 496 60.1
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 6.0e-155 551.6 472 61.0
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 1.8e-154 550.1 470 60.2
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 2.3e-154 549.7 473 61.3
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 1.1e-153 547.4 474 61.0
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 1.5e-153 547.0 478 62.3
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 2.5e-153 546.2 501 60.7
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 5.6e-153 545.0 468 60.7
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 7.4e-153 544.7 510 57.8
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 1.6e-152 543.5 473 61.1
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 2.8e-152 542.7 472 61.0
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 4.8e-152 542.0 471 61.8
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 4.0e-151 538.9 473 60.0
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 5.3e-151 538.5 472 61.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 4.5e-150 535.4 472 60.4
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 7.6e-150 534.6 476 60.1
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 1.7e-149 533.5 473 60.5
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 1.7e-149 533.5 472 60.4
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 8.4e-149 531.2 478 60.7
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 8.4e-149 531.2 478 58.8
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 1.4e-148 530.4 471 59.0
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 4.6e-147 525.4 453 61.4
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 7.9e-147 524.6 456 60.1
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 7.9e-147 524.6 471 58.8
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 4.8e-144 515.4 471 58.6
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 6.2e-144 515.0 453 60.9
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 4.0e-143 512.3 441 60.1
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 3.4e-142 509.2 475 57.1
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 7.4e-137 491.5 472 57.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 6.3e-136 488.4 459 58.0
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 1.0e-133 481.1 468 55.6
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 2.2e-128 463.4 452 54.0
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 6.3e-128 461.8 383 61.6
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 3.2e-124 449.5 406 59.9
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 2.8e-120 436.4 485 51.3
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.5e-118 430.6 360 63.1
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.7e-117 427.2 359 62.7
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 3.2e-116 422.9 476 48.1
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 3.1e-111 406.4 472 49.2
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 4.1e-111 406.0 475 48.0
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 3.5e-110 402.9 481 47.8
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.2e-108 396.4 314 67.5
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 8.8e-106 388.3 318 63.5
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 4.2e-100 369.4 314 61.8
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.5e-89 334.3 479 44.3
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.8e-87 327.4 314 53.8
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 7.8e-78 295.4 314 51.9
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 4.4e-57 226.5 190 63.7
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 3.1e-50 203.8 536 30.6
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 2.2e-48 197.6 159 63.5
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.3e-44 183.3 177 59.3
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.6e-43 180.3 134 69.4
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 4.8e-43 179.9 144 62.5
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 2.6e-41 174.1 136 66.2
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.7e-38 164.1 181 51.9
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.0e-38 162.9 143 62.9
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 5.6e-36 156.4 159 50.9
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 4.0e-26 123.6 151 49.7
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 2.2e-24 117.9 69 87.0
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 5.0e-24 116.7 89 66.3
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 5.3e-10 70.1 207 29.0
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 1.4e-07 62.0 52 63.5
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 5.5e-07 60.1 52 61.5


User provided reference genes

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