Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 3.5e-69 265.4 177 100.0
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 4.6e-53 211.8 151 76.2
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 1.0e-52 210.7 156 78.8
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 1.8e-52 209.9 148 87.2
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 3.0e-52 209.1 158 74.1
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.7e-52 208.0 172 75.0
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 8.7e-52 207.6 159 76.7
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 8.7e-52 207.6 159 76.7
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 1.1e-51 207.2 155 76.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.5e-51 206.8 158 77.2
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.9e-51 206.5 151 80.8
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.5e-51 206.1 152 77.6
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 2.5e-51 206.1 184 72.3
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 2.5e-51 206.1 154 75.3
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 3.3e-51 205.7 159 74.8
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 4.3e-51 205.3 159 75.5
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 4.3e-51 205.3 152 77.6
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 7.4e-51 204.5 150 77.3
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 7.4e-51 204.5 154 77.3
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 7.4e-51 204.5 151 80.1
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.3e-50 203.8 151 73.5
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 1.3e-50 203.8 153 79.1
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.6e-50 203.4 158 73.4
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 2.8e-50 202.6 152 81.6
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 2.8e-50 202.6 157 76.4
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.8e-50 202.6 155 74.8
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 3.7e-50 202.2 152 79.6
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 3.7e-50 202.2 151 83.4
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 3.7e-50 202.2 151 78.1
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.8e-50 201.8 149 80.5
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 4.8e-50 201.8 150 77.3
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 6.2e-50 201.4 149 82.6
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 6.2e-50 201.4 149 82.6
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 6.2e-50 201.4 158 75.9
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 6.2e-50 201.4 184 76.6
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 6.2e-50 201.4 155 72.3
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 6.2e-50 201.4 153 77.8
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 6.2e-50 201.4 159 80.5
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 149 77.2
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 153 78.4
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.1e-49 200.7 151 79.5
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.4e-49 200.3 160 72.5
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.4e-49 200.3 147 81.0
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.4e-49 200.3 147 81.0
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.4e-49 200.3 106 85.8
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.4e-49 200.3 161 74.5
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.4e-49 200.3 155 76.1
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.8e-49 199.9 189 70.9
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.8e-49 199.9 156 76.9
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.8e-49 199.9 156 76.9
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 1.8e-49 199.9 186 69.4
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.8e-49 199.9 148 79.7
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 2.4e-49 199.5 153 75.8
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.4e-49 199.5 149 78.5
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 2.4e-49 199.5 156 78.8
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 2.4e-49 199.5 169 79.3
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.1e-49 199.1 162 72.2
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 3.1e-49 199.1 149 81.2
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.0e-49 198.7 153 74.5
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.3e-49 198.4 160 74.4
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.3e-49 198.4 160 74.4
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 5.3e-49 198.4 178 78.7
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.3e-49 198.4 147 80.3
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 6.9e-49 198.0 164 73.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 6.9e-49 198.0 151 74.8
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 6.9e-49 198.0 151 74.8
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.9e-49 198.0 147 79.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 6.9e-49 198.0 147 79.6
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 6.9e-49 198.0 154 77.3
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 9.0e-49 197.6 152 80.3
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 9.0e-49 197.6 172 68.6
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 9.0e-49 197.6 149 81.2
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-48 197.2 156 72.4
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.2e-48 197.2 156 72.4
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.2e-48 197.2 151 75.5
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-48 196.8 149 76.5
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-48 196.8 124 81.5
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.5e-48 196.8 159 74.2
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.5e-48 196.8 151 76.2
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.5e-48 196.8 156 72.4
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.5e-48 196.8 187 68.4
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.0e-48 196.4 166 71.1
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 2.0e-48 196.4 161 72.7
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.0e-48 196.4 147 78.9
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 2.6e-48 196.1 181 66.9
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 2.6e-48 196.1 149 77.9
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.6e-48 196.1 160 73.8
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.6e-48 196.1 153 77.8
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.4e-48 195.7 166 70.5
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 3.4e-48 195.7 103 85.4
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.4e-48 195.7 150 78.0
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.5e-48 195.3 175 78.3
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 4.5e-48 195.3 159 70.4
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 4.5e-48 195.3 152 77.0
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 5.8e-48 194.9 151 73.5
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 5.8e-48 194.9 183 74.3
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 7.6e-48 194.5 150 82.7
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 1.0e-47 194.1 154 77.3
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.0e-47 194.1 145 77.2
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.0e-47 194.1 157 75.8
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.0e-47 194.1 151 74.8
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.3e-47 193.7 105 84.8
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 1.3e-47 193.7 152 77.0
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.3e-47 193.7 155 76.8
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.7e-47 193.4 152 76.3
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.7e-47 193.4 152 76.3
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.7e-47 193.4 152 76.3
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.7e-47 193.4 151 78.8
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 2.2e-47 193.0 156 71.2
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.2e-47 193.0 162 71.0
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.2e-47 193.0 149 77.2
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.2e-47 193.0 154 80.5
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 3.8e-47 192.2 151 79.5
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.8e-47 192.2 143 82.5
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 3.8e-47 192.2 147 77.6
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 4.9e-47 191.8 152 77.6
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 4.9e-47 191.8 144 73.6
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 6.5e-47 191.4 151 74.8
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 8.4e-47 191.0 152 73.0
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 8.4e-47 191.0 146 80.1
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.1e-46 190.7 149 79.2
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 1.4e-46 190.3 157 72.0
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 2.5e-46 189.5 159 69.8
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.2e-46 189.1 106 79.2
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 7.1e-46 188.0 142 82.4
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 7.1e-46 188.0 151 74.2
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 9.3e-46 187.6 158 70.3
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.2e-45 187.2 148 75.0
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 4.6e-45 185.3 145 78.6
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 6.0e-45 184.9 155 71.6
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 7.9e-45 184.5 108 77.8
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 7.9e-45 184.5 160 76.9
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.0e-44 184.1 156 72.4
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.7e-44 181.4 147 78.2
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 4.3e-43 178.7 95 90.5
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 4.3e-43 178.7 148 76.4
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 4.3e-43 178.7 148 76.4
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 5.7e-43 178.3 150 72.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 7.4e-43 177.9 91 91.2
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.3e-42 177.2 171 71.9
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.4e-41 173.7 147 73.5
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 4.0e-41 172.2 90 87.8
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.0e-41 172.2 89 91.0
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 9.0e-41 171.0 148 73.0
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.5e-40 168.7 158 69.6
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 5.8e-40 168.3 160 64.4
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 2.9e-39 166.0 93 81.7
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 1.4e-38 163.7 158 67.7
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.6e-37 160.2 116 81.0
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-33 147.1 127 62.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.8e-33 146.7 134 67.9
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.7e-31 140.2 172 63.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 5.0e-31 138.7 77 77.9
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 1.8e-28 130.2 120 58.3
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 3.3e-27 125.9 102 67.6
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.1e-25 120.9 76 69.7
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 1.0e-23 114.4 93 61.3
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.2e-21 107.5 58 86.2
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 3.6e-21 105.9 94 52.1
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.6e-19 99.8 50 88.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 4.1e-17 92.4 108 53.7
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 7.0e-17 91.7 143 48.3
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 5.9e-16 88.6 108 53.7
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 1.2e-13 80.9 45 82.2
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 5.2e-12 75.5 70 60.0
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-11 73.9 70 60.0
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 1.5e-11 73.9 70 60.0
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 9.7e-11 71.2 37 83.8
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 70 58.6
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 70 58.6
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 70 58.6
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 5.9e-08 62.0 38 76.3


User provided reference genes

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