Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1354.3 691 100.0
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 3.5e-305 1051.2 691 75.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 1.2e-236 823.5 681 60.2
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 1.3e-235 820.1 681 60.1
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 3.8e-235 818.5 680 59.6
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.1e-234 817.0 681 59.9
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 5.5e-234 814.7 681 59.3
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 7.1e-234 814.3 676 59.5
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 9.3e-234 813.9 681 60.1
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 2.7e-233 812.4 681 59.3
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 7.9e-233 810.8 681 59.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.0e-232 810.4 680 59.1
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 2.3e-232 809.3 672 60.6
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 5.1e-232 808.1 681 59.9
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 5.1e-232 808.1 681 59.2
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 1.1e-231 807.0 681 59.0
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.5e-231 806.6 681 59.8
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 4.3e-231 805.1 681 59.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 9.6e-231 803.9 681 59.5
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 1.6e-230 803.1 680 58.8
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 4.8e-230 801.6 681 58.3
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 4.8e-230 801.6 681 58.3
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 4.8e-230 801.6 681 58.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.1e-229 800.4 680 58.5
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 1.4e-229 800.0 681 58.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 1.4e-229 800.0 681 58.6
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 1.8e-229 799.7 681 59.0
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 1.8e-229 799.7 681 59.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.4e-229 799.3 681 59.0
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 6.9e-229 797.7 682 58.2
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.2e-228 797.0 671 59.2
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 1.5e-228 796.6 680 58.8
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 1.5e-228 796.6 682 58.5
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 2.6e-228 795.8 680 58.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 2.6e-228 795.8 679 59.4
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 4.5e-228 795.0 669 59.2
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 7.6e-228 794.3 681 58.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 1.0e-227 793.9 682 58.4
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 1.7e-227 793.1 683 58.3
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 2.2e-227 792.7 682 58.1
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 2.2e-227 792.7 681 58.3
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 2.9e-227 792.3 678 58.4
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 3.8e-227 792.0 681 58.1
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 3.8e-227 792.0 681 58.1
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 3.8e-227 792.0 681 58.1
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.8e-227 792.0 681 58.9
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 6.5e-227 791.2 681 58.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.1e-226 790.4 681 58.7
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.9e-226 789.6 681 58.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 2.5e-226 789.3 681 58.0
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 2.5e-226 789.3 681 58.3
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 4.2e-226 788.5 682 57.9
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 7.1e-226 787.7 682 58.1
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 9.3e-226 787.3 699 57.8
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 9.3e-226 787.3 692 58.1
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 1.6e-225 786.6 681 58.1
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.7e-225 785.8 681 58.1
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 2.7e-225 785.8 680 58.8
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 2.7e-225 785.8 681 58.1
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 3.5e-225 785.4 682 58.4
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.8e-224 783.1 679 57.9
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 1.8e-224 783.1 668 59.0
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 1.8e-224 783.1 681 58.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 2.3e-224 782.7 681 57.9
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 3.9e-224 781.9 703 57.0
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 3.9e-224 781.9 680 58.4
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.5e-223 779.2 691 57.0
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.5e-223 779.2 683 57.7
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.4e-223 777.7 685 58.0
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 1.6e-222 776.5 708 56.5
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 2.2e-222 776.2 683 58.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.8e-222 775.8 709 55.7
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.7e-222 775.4 686 57.6
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 3.7e-222 775.4 673 57.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 4.8e-222 775.0 681 58.0
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 8.2e-222 774.2 681 57.4
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 2.4e-221 772.7 681 57.6
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.4e-221 772.7 681 57.4
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 2.4e-221 772.7 674 56.7
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 3.1e-221 772.3 681 57.7
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.5e-220 770.0 682 56.9
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 1.5e-220 770.0 678 57.4
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.0e-220 769.6 685 57.2
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 3.4e-220 768.8 682 57.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 7.6e-220 767.7 682 57.2
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 3.8e-219 765.4 682 57.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 7.2e-218 761.1 727 54.2
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 9.3e-218 760.8 683 55.6
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 1.2e-217 760.4 700 56.0
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.0e-216 757.3 680 55.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 2.3e-216 756.1 685 56.6
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 6.7e-216 754.6 681 56.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 5.9e-212 741.5 693 55.7
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 1.0e-211 740.7 765 51.5
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 1.3e-211 740.3 652 56.4
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.2e-211 739.6 703 53.3
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 8.5e-211 737.6 717 53.4
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-210 736.5 666 57.2
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 4.2e-210 735.3 696 54.3
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.2e-209 733.8 672 55.5
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.8e-206 722.6 741 51.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 9.4e-202 707.6 683 52.9
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 9.4e-202 707.6 683 52.9
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.8e-198 695.3 583 58.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.0e-195 687.6 589 57.9
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.2e-195 686.4 604 57.1
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 4.2e-194 682.2 683 50.2
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 3.6e-193 679.1 691 49.9
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.7e-192 674.9 629 55.0
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 2.4e-189 666.4 674 50.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 3.6e-185 652.5 565 56.1
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.4e-181 639.8 553 58.2
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.2e-177 627.5 589 54.8
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 2.1e-177 626.7 674 51.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.5e-175 620.5 544 58.3
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 8.9e-168 594.7 490 58.8
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.8e-159 565.5 471 58.0
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.3e-139 500.4 487 54.6
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.2e-129 465.7 443 53.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 2.2e-118 430.6 714 37.0
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 3.4e-111 406.8 327 60.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.7e-108 397.1 758 32.5
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 1.6e-92 344.7 370 49.2
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 8.2e-89 332.4 280 61.4
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.0e-86 323.2 740 30.5
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.6e-84 318.2 269 58.0
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.3e-80 303.1 268 59.3
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.2e-75 286.6 254 57.9
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.5e-74 285.0 252 57.9
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.7e-73 281.6 242 57.0
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.7e-70 271.6 237 59.1
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.4e-64 250.0 233 53.2
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.8e-56 224.9 178 60.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 6.8e-51 206.5 191 52.9
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 8.9e-51 206.1 215 51.6
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.9e-49 201.1 148 60.8
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-43 182.6 155 54.2
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.8e-43 181.8 487 26.3
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.7e-41 174.1 194 49.0
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.0e-38 166.0 187 46.0
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 4.7e-36 157.1 155 52.3
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.1e-35 156.0 161 50.9
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.4e-34 151.0 180 47.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.3e-33 149.1 169 47.9
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.6e-28 131.0 109 56.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.1e-27 129.4 114 57.9
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.0e-26 125.2 111 51.4
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.2e-25 121.7 119 52.9
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 1.3e-22 112.5 104 56.7
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.6e-18 96.7 80 61.2
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 2.4e-16 91.7 75 58.7
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 2.1e-15 88.6 94 48.9
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.7e-14 85.5 59 64.4
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 3.9e-14 84.3 59 62.7
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 2.5e-13 81.6 94 45.7
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 2.5e-13 81.6 94 45.7
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 7.3e-13 80.1 57 59.6
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.1e-11 76.3 143 32.2
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 4.0e-11 74.3 71 50.7
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.2e-09 68.6 97 40.2
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.3e-06 59.3 40 65.0


User provided reference genes

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