Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 1.3e-126 456.4 231 100.0
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 3.9e-112 408.3 227 86.8
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 1.6e-81 306.6 225 63.6
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 8.3e-78 294.3 225 60.9
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 5.4e-77 291.6 225 59.6
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 2.0e-76 289.7 227 59.0
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 2.7e-76 289.3 225 59.1
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 6.6e-75 284.6 225 58.2
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.6e-75 284.3 225 56.4
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 8.6e-75 284.3 225 56.4
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 3.3e-74 282.3 225 56.9
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.3e-74 282.3 222 58.1
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 5.6e-74 281.6 225 56.4
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 9.5e-74 280.8 225 54.7
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 1.6e-73 280.0 226 57.1
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 2.1e-73 279.6 225 56.0
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 2.8e-73 279.3 225 57.3
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 2.8e-73 279.3 221 57.9
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 4.7e-73 278.5 225 56.9
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 8.0e-73 277.7 225 55.6
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 8.0e-73 277.7 222 56.8
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 6.8e-72 274.6 225 54.2
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 8.9e-72 274.2 225 56.9
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 2.0e-71 273.1 225 55.1
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.0e-71 273.1 225 54.7
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 3.4e-71 272.3 222 55.9
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 3.4e-71 272.3 225 53.3
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 5.8e-71 271.6 226 55.3
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 7.5e-71 271.2 225 53.8
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.5e-71 271.2 225 54.2
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 7.5e-71 271.2 223 54.3
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 1.3e-70 270.4 225 55.1
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.3e-70 270.4 225 53.8
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 2.2e-70 269.6 222 54.5
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 2.9e-70 269.2 222 55.4
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 2.9e-70 269.2 225 53.8
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.7e-70 268.9 225 54.7
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 3.7e-70 268.9 219 56.2
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-69 267.3 222 55.0
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.1e-69 267.3 225 53.8
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 1.9e-69 266.5 225 54.2
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.4e-69 266.2 222 54.1
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-69 265.8 225 53.8
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 4.1e-69 265.4 245 52.7
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 4.1e-69 265.4 226 55.3
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 4.1e-69 265.4 225 54.2
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 5.4e-69 265.0 222 53.6
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 5.4e-69 265.0 225 54.2
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 5.4e-69 265.0 225 53.8
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.0e-69 264.6 225 53.3
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 9.2e-69 264.2 225 55.1
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 9.2e-69 264.2 225 53.3
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 1.2e-68 263.8 227 56.4
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 1.6e-68 263.5 226 51.3
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 2.7e-68 262.7 240 52.9
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 4.6e-68 261.9 225 52.9
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 4.6e-68 261.9 227 55.9
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.0e-67 260.8 225 52.9
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 3.0e-67 259.2 262 47.7
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 3.0e-67 259.2 262 47.7
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 3.0e-67 259.2 225 52.4
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 3.0e-67 259.2 221 53.8
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 3.9e-67 258.8 225 52.4
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 6.6e-67 258.1 226 50.9
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 6.6e-67 258.1 226 50.9
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 8.6e-67 257.7 225 52.0
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 2.5e-66 256.1 222 54.5
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 2.5e-66 256.1 225 52.0
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 3.3e-66 255.8 226 52.2
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.3e-66 255.8 225 51.1
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 4.3e-66 255.4 225 51.1
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 4.3e-66 255.4 226 50.0
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 7.3e-66 254.6 225 50.7
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 7.3e-66 254.6 225 51.1
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.6e-65 253.4 222 50.5
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 2.8e-65 252.7 223 51.1
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 3.6e-65 252.3 254 49.6
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 6.2e-65 251.5 226 51.8
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 6.2e-65 251.5 225 52.0
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 1.1e-64 250.8 221 52.9
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 2.3e-64 249.6 225 47.1
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 5.2e-64 248.4 225 47.6
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.2e-63 247.3 225 49.3
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 2.0e-63 246.5 223 48.9
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.4e-63 245.7 225 48.9
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 3.4e-63 245.7 225 48.9
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.4e-63 245.7 225 48.9
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 7.5e-63 244.6 245 48.2
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 9.8e-63 244.2 226 50.9
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 1.3e-62 243.8 225 49.8
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.3e-62 243.8 225 49.8
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 1.3e-62 243.8 225 50.2
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 1.7e-62 243.4 225 48.4
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 2.9e-62 242.7 225 49.3
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 1.4e-61 240.4 267 44.6
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.2e-60 237.3 225 47.6
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.6e-60 236.9 217 51.2
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.1e-60 236.5 204 53.4
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 4.6e-60 235.3 219 50.7
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.1e-59 231.9 221 48.9
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.3e-58 228.0 222 47.3
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.4e-56 223.8 155 65.8
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 2.3e-56 223.0 225 47.6
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 2.6e-55 219.5 222 47.3
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.7e-54 216.9 157 63.1
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.7e-54 216.9 157 63.1
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 4.9e-54 215.3 224 42.0
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 1.9e-53 213.4 222 46.8
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 3.2e-53 212.6 158 59.5
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 2.3e-51 206.5 157 58.6
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 2.3e-51 206.5 157 59.2
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.6e-50 201.8 221 43.4
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 2.8e-49 199.5 225 42.7
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.6e-49 199.1 189 49.7
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-48 197.2 196 46.4
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 1.8e-48 196.8 210 45.2
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 6.8e-48 194.9 225 40.9
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 8.9e-48 194.5 153 56.2
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 8.9e-48 194.5 177 52.0
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-47 194.1 221 42.1
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-47 194.1 227 41.4
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 2.0e-47 193.4 158 55.1
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 6.4e-46 188.3 182 49.5
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 4.6e-44 182.2 217 42.4
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.7e-43 180.3 132 62.1
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 1.1e-42 177.6 152 52.6
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.5e-42 177.2 181 45.9
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 2.5e-42 176.4 221 40.3
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 3.3e-42 176.0 116 69.8
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 2.8e-41 172.9 152 53.3
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 4.7e-41 172.2 221 38.5
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.1e-40 171.0 133 57.9
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 4.0e-40 169.1 202 45.0
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 9.0e-40 167.9 225 35.6
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 9.0e-40 167.9 152 50.7
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.9e-38 162.9 152 50.0
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.4e-37 160.6 115 61.7
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 1.9e-37 160.2 152 49.3
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.5e-36 156.0 131 55.7
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 1.0e-35 154.5 115 60.9
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 1.5e-34 150.6 116 62.1
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.9e-34 150.2 212 38.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-33 146.0 114 58.8
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-32 144.1 156 42.9
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.8e-32 143.7 127 50.4
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 6.9e-32 141.7 158 45.6
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 6.7e-27 125.2 96 59.4
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 5.5e-21 105.5 119 44.5
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 6.2e-17 92.0 73 53.4
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.1e-16 91.3 72 61.1
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 5.3e-16 89.0 70 55.7
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-14 82.0 157 30.6
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.5e-13 79.0 64 56.2
Oeu055661.2 Olea europaea HOM05D001514 ORTHO05D005209 3.9e-11 72.8 50 58.0
Rhsim03G0228900 Rhododendron simsii HOM05D001514 ORTHO05D005209 3.9e-11 72.8 50 56.0
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.3e-10 69.7 66 48.5
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 1.3e-09 67.8 166 25.9
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 2.9e-06 56.6 142 25.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 6.5e-06 55.5 43 58.1
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 6.5e-06 55.5 43 58.1
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 6.5e-06 55.5 43 58.1


User provided reference genes

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