Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0693500 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 1.0e-224 783.1 400 100.0
Zm00001eb226230 Zea mays HOM05D003678 ORTHO05D004340 1.3e-198 696.4 405 88.4
MBI16_g31785_MAGBIO Magnolia biondii HOM05D003678 ORTHO05D004340 2.6e-151 539.3 414 66.9
Aqoxy7G03011 Aquilegia oxysepala HOM05D003678 ORTHO05D004340 1.4e-149 533.5 413 68.0
Cfa013262 Carpinus fangiana HOM05D003678 ORTHO05D004340 7.0e-149 531.2 411 65.2
TAR626G0897 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.6e-148 530.0 408 65.4
Haze_21723 Corylus avellana HOM05D003678 ORTHO05D004340 2.6e-148 529.3 411 65.0
TAR626G0756 Trochodendron aralioides HOM05D003678 ORTHO05D004340 4.5e-148 528.5 410 65.4
MSTRG.25776 Avicennia marina HOM05D003678 ORTHO05D004340 5.0e-147 525.0 408 63.5
QL12p024946 Quercus lobata HOM05D003678 ORTHO05D004340 3.2e-146 522.3 411 63.7
MD15G1108800 Malus domestica HOM05D003678 ORTHO05D004340 1.6e-145 520.0 407 64.9
Prupe.1G461000 Prunus persica HOM05D003678 ORTHO05D004340 1.0e-144 517.3 410 63.9
Hma1.2p1_0379F.1_g139790 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 8.8e-144 514.2 409 63.1
Hma1.2p1_0891F.1_g233175 Hydrangea macrophylla HOM05D003678 ORTHO05D004340 8.8e-144 514.2 409 63.1
Cc08_g06430 Coffea canephora HOM05D003678 ORTHO05D004340 3.4e-143 512.3 412 63.3
Dinv18146 Davidia involucrata HOM05D003678 ORTHO05D004340 5.7e-143 511.5 412 63.1
Manes.03G003200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.7e-142 510.0 409 62.8
CSS0027905 Camellia sinensis var. sinensis HOM05D003678 ORTHO05D004340 2.2e-142 509.6 411 63.3
CDE02G2639 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 2.8e-142 509.2 411 63.0
Glyma.11G172610 Glycine max HOM05D003678 ORTHO05D004340 2.8e-142 509.2 411 63.0
PSO170G4284 Papaver somniferum HOM05D003678 ORTHO05D004340 2.8e-142 509.2 407 64.9
Hund03284 Selenicereus undatus HOM05D003678 ORTHO05D004340 2.8e-142 509.2 414 62.3
Oeu040383.1 Olea europaea HOM05D003678 ORTHO05D004340 4.8e-142 508.4 412 63.8
AUR62009050 Chenopodium quinoa HOM05D003678 ORTHO05D004340 6.3e-142 508.1 412 60.9
Ciclev10008476m.g Citrus clementina HOM05D003678 ORTHO05D004340 6.3e-142 508.1 412 61.4
Glyma.17G200200 Glycine max HOM05D003678 ORTHO05D004340 6.3e-142 508.1 411 63.0
arahy.Tifrunner.gnm1.ann1.DFD6U9 Arachis hypogaea HOM05D003678 ORTHO05D004340 8.3e-142 507.7 413 63.0
Dinv03491 Davidia involucrata HOM05D003678 ORTHO05D004340 8.3e-142 507.7 411 63.3
TAR383G0188 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.1e-141 507.3 405 63.7
arahy.Tifrunner.gnm1.ann1.P9WJGS Arachis hypogaea HOM05D003678 ORTHO05D004340 1.4e-141 506.9 412 62.6
vmacro05102 Vaccinium macrocarpon HOM05D003678 ORTHO05D004340 1.4e-141 506.9 410 65.1
DCAR_000669 Daucus carota HOM05D003678 ORTHO05D004340 1.8e-141 506.5 398 63.6
Eucgr.C04005 Eucalyptus grandis HOM05D003678 ORTHO05D004340 1.8e-141 506.5 415 62.9
Glyma.17G189600 Glycine max HOM05D003678 ORTHO05D004340 1.8e-141 506.5 411 62.5
Duzib168G2376 Durio zibethinus HOM05D003678 ORTHO05D004340 2.4e-141 506.1 412 62.1
Gohir.D07G001800 Gossypium hirsutum HOM05D003678 ORTHO05D004340 2.4e-141 506.1 402 64.4
CANSAT25G1292 Cannabis sativa HOM05D003678 ORTHO05D004340 3.1e-141 505.8 416 61.5
Thecc.09G006300 Theobroma cacao HOM05D003678 ORTHO05D004340 4.1e-141 505.4 410 62.2
Glyma.11G172819 Glycine max HOM05D003678 ORTHO05D004340 7.0e-141 504.6 411 62.3
Gorai.001G001500 Gossypium raimondii HOM05D003678 ORTHO05D004340 7.0e-141 504.6 403 64.5
TAR383G0531 Trochodendron aralioides HOM05D003678 ORTHO05D004340 7.0e-141 504.6 405 63.5
AUR62020613 Chenopodium quinoa HOM05D003678 ORTHO05D004340 1.6e-140 503.4 413 61.0
Solyc12g096450.2 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.6e-140 503.4 416 61.3
Sopen12g032280 Solanum pennellii HOM05D003678 ORTHO05D004340 3.5e-140 502.3 416 61.1
Peaxi162Scf00459g00837 Petunia axillaris HOM05D003678 ORTHO05D004340 4.5e-140 501.9 405 60.7
SGA_v2.0_scaffold193G40661 Striga asiatica HOM05D003678 ORTHO05D004340 4.5e-140 501.9 441 59.2
Ah.06g192800 Amaranthus hybridus HOM05D003678 ORTHO05D004340 1.7e-139 500.0 414 59.9
Gohir.A07G001400 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.7e-139 500.0 403 64.5
EL10Ac2g03738 Beta vulgaris HOM05D003678 ORTHO05D004340 2.9e-139 499.2 442 58.6
RcHm_v2.0_Chr6g0304871 Rosa chinensis HOM05D003678 ORTHO05D004340 6.5e-139 498.0 416 62.3
Atru.chr7.2631 Acer truncatum HOM05D003678 ORTHO05D004340 1.9e-138 496.5 412 61.4
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 1.9e-138 496.5 412 61.2
CiPaw.08G019100 Carya illinoinensis HOM05D003678 ORTHO05D004340 2.5e-138 496.1 413 61.5
FvH4_2g36910 Fragaria vesca HOM05D003678 ORTHO05D004340 3.2e-138 495.7 412 61.9
Gohir.A05G065000 Gossypium hirsutum HOM05D003678 ORTHO05D004340 1.2e-137 493.8 409 61.6
PGSC0003DMG400029367 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.6e-137 493.4 415 61.9
Lj5g0015114 Lotus japonicus HOM05D003678 ORTHO05D004340 2.1e-137 493.0 414 63.3
FAN20G0096 Fragaria x ananassa HOM05D003678 ORTHO05D004340 2.7e-137 492.7 411 61.6
Nitab4.5_0005481g0010 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.7e-137 492.7 416 59.4
FAN15G2333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 4.7e-137 491.9 409 64.1
Lalb_Chr14g0362261 Lupinus albus HOM05D003678 ORTHO05D004340 4.7e-137 491.9 420 62.4
Gorai.009G068400 Gossypium raimondii HOM05D003678 ORTHO05D004340 1.0e-136 490.7 409 61.4
Cpa.g.sc23.4 Carica papaya HOM05D003678 ORTHO05D004340 1.4e-136 490.3 410 61.0
CANSAT11G2609 Cannabis sativa HOM05D003678 ORTHO05D004340 1.8e-136 490.0 417 59.7
Migut.A00439 Erythranthe guttata HOM05D003678 ORTHO05D004340 3.0e-136 489.2 412 61.2
Gohir.D05G067600 Gossypium hirsutum HOM05D003678 ORTHO05D004340 3.0e-136 489.2 411 60.8
Rhsim07G0170500 Rhododendron simsii HOM05D003678 ORTHO05D004340 3.0e-136 489.2 410 62.2
VMungo0647G0546 Vigna mungo HOM05D003678 ORTHO05D004340 4.0e-136 488.8 416 60.6
PSO063G6534 Papaver somniferum HOM05D003678 ORTHO05D004340 6.8e-136 488.0 406 62.8
Ca_12869_v3 Cicer arietinum L. HOM05D003678 ORTHO05D004340 2.0e-135 486.5 413 61.7
Nitab4.5_0001110g0180 Nicotiana tabacum HOM05D003678 ORTHO05D004340 2.6e-135 486.1 422 58.8
HPP92_010767 Vanilla planifolia HOM05D003678 ORTHO05D004340 4.4e-135 485.3 423 63.1
CAN.G566.61 Capsicum annuum HOM05D003678 ORTHO05D004340 5.7e-135 485.0 415 61.2
PGR044G2213 Punica granatum HOM05D003678 ORTHO05D004340 7.5e-135 484.6 416 59.6
Lalb_Chr24g0402471 Lupinus albus HOM05D003678 ORTHO05D004340 3.7e-134 482.3 415 62.2
Potri.006G275300 Populus trichocarpa HOM05D003678 ORTHO05D004340 3.7e-134 482.3 415 61.0
unitig_32.g11644 Utricularia gibba HOM05D003678 ORTHO05D004340 4.1e-133 478.8 412 60.0
Sabra06G0213100 Salix brachista HOM05D003678 ORTHO05D004340 2.7e-132 476.1 415 60.2
FAN27G1333 Fragaria x ananassa HOM05D003678 ORTHO05D004340 3.5e-132 475.7 406 60.3
Medtr1g009770 Medicago truncatula HOM05D003678 ORTHO05D004340 4.5e-132 475.3 414 59.4
Nitab4.5_0000555g0240 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.0e-131 474.2 417 58.8
THA.LOC104803597 Tarenaya hassleriana HOM05D003678 ORTHO05D004340 1.7e-131 473.4 415 60.7
Carub.0007s0914 Capsella rubella HOM05D003678 ORTHO05D004340 2.9e-131 472.6 412 59.5
TWI63G1033 Tripterygium wilfordii HOM05D003678 ORTHO05D004340 8.6e-131 471.1 414 59.7
Phvul.001G058800 Phaseolus vulgaris HOM05D003678 ORTHO05D004340 1.5e-130 470.3 417 58.8
GSVIVG01035534001 Vitis vinifera HOM05D003678 ORTHO05D004340 1.5e-130 470.3 403 59.8
Psat6g032480 Pisum sativum HOM05D003678 ORTHO05D004340 7.3e-130 468.0 411 61.3
Thhalv10025366m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 2.1e-129 466.5 413 59.1
HanXRQChr16g0513211 Helianthus annuus HOM05D003678 ORTHO05D004340 3.6e-129 465.7 414 58.2
AL7G20640 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 6.1e-129 464.9 414 59.7
CARHR239300 Cardamine hirsuta HOM05D003678 ORTHO05D004340 6.1e-129 464.9 416 58.7
MELO3C003636.2 Cucumis melo HOM05D003678 ORTHO05D004340 8.0e-129 464.5 403 60.8
Cc08_g06510 Coffea canephora HOM05D003678 ORTHO05D004340 1.0e-128 464.2 378 62.4
ECA233G4849 Erigeron canadensis HOM05D003678 ORTHO05D004340 1.0e-128 464.2 406 59.4
Peaxi162Scf00045g01736 Petunia axillaris HOM05D003678 ORTHO05D004340 1.4e-128 463.8 413 57.4
Sed0004467 Sechium edule HOM05D003678 ORTHO05D004340 2.3e-128 463.0 403 59.6
Aa31LG2G18930 Aethionema arabicum HOM05D003678 ORTHO05D004340 6.8e-128 461.5 411 58.9
ATR0580G292 Amborella trichopoda HOM05D003678 ORTHO05D004340 2.0e-127 459.9 408 59.6
CsaV3_3G047000 Cucumis sativus L. HOM05D003678 ORTHO05D004340 2.6e-127 459.5 403 59.3
Actinidia03577 Actinidia chinensis HOM05D003678 ORTHO05D004340 4.4e-127 458.8 411 59.1
BcaC09g51921 Brassica carinata HOM05D003678 ORTHO05D004340 6.4e-126 454.9 413 57.6
C01p07630 Brassica napus HOM05D003678 ORTHO05D004340 6.4e-126 454.9 413 57.6
Potri.018G006300 Populus trichocarpa HOM05D003678 ORTHO05D004340 1.1e-125 454.1 411 57.9
BcaNung04590 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-125 453.8 411 58.2
Lsat_1_v5_gn_6_15381 Lactuca sativa HOM05D003678 ORTHO05D004340 1.4e-125 453.8 408 56.6
TPR.G12018 Trifolium pratense HOM05D003678 ORTHO05D004340 1.4e-125 453.8 447 56.4
BolC1t00743H Brassica oleracea HOM05D003678 ORTHO05D004340 1.6e-124 450.3 414 57.5
AT4G31420 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 2.7e-124 449.5 416 57.9
Sed0010708 Sechium edule HOM05D003678 ORTHO05D004340 2.7e-124 449.5 405 57.5
SEGI_16726 Sequoiadendron giganteum HOM05D003678 ORTHO05D004340 7.8e-124 448.0 415 57.3
A01p06860 Brassica napus HOM05D003678 ORTHO05D004340 1.7e-123 446.8 406 57.9
BraA01t00637Z Brassica rapa HOM05D003678 ORTHO05D004340 3.9e-123 445.7 407 58.0
COL.COLO4_19043 Corchorus olitorius HOM05D003678 ORTHO05D004340 3.9e-123 445.7 376 61.4
Sp7g29280 Schrenkiella parvula HOM05D003678 ORTHO05D004340 6.6e-123 444.9 412 57.0
HanXRQChr12g0384061 Helianthus annuus HOM05D003678 ORTHO05D004340 7.3e-122 441.4 398 59.3
Aa31LG7G11470 Aethionema arabicum HOM05D003678 ORTHO05D004340 2.8e-121 439.5 410 58.0
Thhalv10000189m.g Eutrema salsugineum HOM05D003678 ORTHO05D004340 6.2e-121 438.3 407 56.8
Sp4g03510 Schrenkiella parvula HOM05D003678 ORTHO05D004340 5.2e-120 435.3 406 56.7
AT2G24500 Arabidopsis thaliana HOM05D003678 ORTHO05D004340 2.6e-119 433.0 405 56.3
BcaB06g27975 Brassica carinata HOM05D003678 ORTHO05D004340 3.4e-119 432.6 406 56.7
Carub.0004s0384 Capsella rubella HOM05D003678 ORTHO05D004340 4.1e-117 425.6 407 55.8
AL4G14980 Arabidopsis lyrata HOM05D003678 ORTHO05D004340 5.4e-117 425.2 404 55.0
BraA09t41018Z Brassica rapa HOM05D003678 ORTHO05D004340 9.2e-117 424.5 406 57.9
CiPaw.07G213700 Carya illinoinensis HOM05D003678 ORTHO05D004340 1.3e-115 420.6 374 59.1
BcaC02g08448 Brassica carinata HOM05D003678 ORTHO05D004340 1.5e-114 417.2 417 54.9
BolC4t26963H Brassica oleracea HOM05D003678 ORTHO05D004340 1.5e-114 417.2 417 54.9
CARHR117530 Cardamine hirsuta HOM05D003678 ORTHO05D004340 1.5e-114 417.2 406 56.2
Lsat_1_v5_gn_3_27981 Lactuca sativa HOM05D003678 ORTHO05D004340 1.9e-114 416.8 421 55.8
C04p54110 Brassica napus HOM05D003678 ORTHO05D004340 2.1e-113 413.3 414 54.8
A09p56240 Brassica napus HOM05D003678 ORTHO05D004340 2.8e-113 412.9 431 55.2
A04p18800 Brassica napus HOM05D003678 ORTHO05D004340 3.6e-113 412.5 411 54.0
BraA04t17489Z Brassica rapa HOM05D003678 ORTHO05D004340 8.9e-112 407.9 409 55.0
PGSC0003DMG401026315 Solanum tuberosum HOM05D003678 ORTHO05D004340 1.2e-111 407.5 356 57.0
Nn8g40427 Nelumbo nucifera HOM05D003678 ORTHO05D004340 7.5e-111 404.8 324 63.9
ClCG05G017500 Citrullus lanatus HOM05D003678 ORTHO05D004340 1.1e-109 401.0 344 61.0
CAN.G673.15 Capsicum annuum HOM05D003678 ORTHO05D004340 4.1e-109 399.1 360 58.1
Manes.16G136200 Manihot esculenta HOM05D003678 ORTHO05D004340 1.7e-107 393.7 416 53.1
Lj7A752T54 Lonicera japonica HOM05D003678 ORTHO05D004340 1.9e-106 390.2 402 53.7
HanXRQChr16g0504351 Helianthus annuus HOM05D003678 ORTHO05D004340 9.5e-106 387.9 364 55.5
Sopen08g002420 Solanum pennellii HOM05D003678 ORTHO05D004340 1.8e-104 383.6 348 54.6
Solyc08g006470.4 Solanum lycopersicum HOM05D003678 ORTHO05D004340 1.3e-102 377.5 344 54.9
Sc09g0008090 Simmondsia chinensis HOM05D003678 ORTHO05D004340 4.6e-100 369.0 288 63.2
MD08G1131000 Malus domestica HOM05D003678 ORTHO05D004340 8.6e-99 364.8 284 64.1
CDE05G1087 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 1.6e-97 360.5 369 53.7
BolC8t51492H Brassica oleracea HOM05D003678 ORTHO05D004340 4.0e-96 355.9 429 50.6
BcaC07g40924 Brassica carinata HOM05D003678 ORTHO05D004340 2.2e-94 350.1 398 51.8
Mapoly0085s0044 Marchantia polymorpha HOM05D003678 ORTHO05D004340 1.2e-92 344.4 416 47.1
SMO143G0266 Selaginella moellendorffii HOM05D003678 ORTHO05D004340 1.5e-90 337.4 405 46.9
Medtr1g047010 Medicago truncatula HOM05D003678 ORTHO05D004340 1.1e-85 321.2 370 50.0
Nitab4.5_0004131g0030 Nicotiana tabacum HOM05D003678 ORTHO05D004340 1.1e-82 311.2 402 45.8
TAR383G1077 Trochodendron aralioides HOM05D003678 ORTHO05D004340 1.5e-82 310.8 379 49.3
Oeu018570.1 Olea europaea HOM05D003678 ORTHO05D004340 7.4e-82 308.5 314 51.3
C08p39190 Brassica napus HOM05D003678 ORTHO05D004340 3.6e-81 306.2 339 52.5
Pp3c2_4670 Physcomitrium patens HOM05D003678 ORTHO05D004340 2.2e-78 297.0 418 44.0
CBR_g30359 Chara braunii HOM05D003678 ORTHO05D004340 1.6e-76 290.8 464 39.7
AagrBONN_evm.TU.Sc2ySwM_228.5550 Anthoceros agrestis HOM05D003678 ORTHO05D004340 1.9e-69 267.3 399 41.1
CDE05G3053 Ceratophyllum demersum HOM05D003678 ORTHO05D004340 2.8e-65 253.4 255 51.8
ECA246G1371 Erigeron canadensis HOM05D000763 ORTHO05D004340 1.3e-59 234.6 309 43.4
BcaC07g37410 Brassica carinata HOM05D003678 ORTHO05D004340 1.0e-51 208.4 243 46.5
Pp3c14_26000 Physcomitrium patens HOM05D003678 ORTHO05D004340 8.2e-49 198.7 233 44.6
BolC1t05292H Brassica oleracea HOM05D003678 ORTHO05D004340 5.9e-31 139.4 217 41.5
CAN.G4.3 Capsicum annuum HOM05D003678 ORTHO05D004340 2.9e-30 137.1 105 61.9
BolC8t47735H Brassica oleracea HOM05D003678 ORTHO05D004340 4.7e-28 129.8 225 38.7
C03p31060 Brassica napus HOM05D003678 ORTHO05D004340 3.0e-27 127.1 225 39.6
Cfa025296 Carpinus fangiana HOM05D003678 ORTHO05D004340 6.8e-27 125.9 315 28.9
Cre17.g716400 Chlamydomonas reinhardtii HOM05D003678 ORTHO05D004340 2.6e-26 124.0 476 27.3
BcaB03g16788 Brassica carinata HOM05D003678 ORTHO05D004340 1.4e-24 118.2 122 51.6
PRCOL_00002050 Prasinoderma coloniale HOM05D003678 ORTHO05D004340 1.2e-23 115.2 420 26.9
BcaC05g27745 Brassica carinata HOM05D003678 ORTHO05D004340 2.2e-22 110.9 110 55.5
C05p37300 Brassica napus HOM05D003678 ORTHO05D004340 1.1e-21 108.6 98 57.1
C08p08900 Brassica napus HOM05D003678 ORTHO05D004340 2.5e-21 107.5 98 56.1
Os06g0693600 Oryza sativa ssp. japonica HOM05D003678 ORTHO05D004340 4.2e-21 106.7 125 56.0
Actinidia14145 Actinidia chinensis HOM05D003678 ORTHO05D004340 2.3e-19 100.9 111 50.5
BcaC06g31298 Brassica carinata HOM05D003678 ORTHO05D004340 4.0e-19 100.1 56 76.8
Medtr5g061270 Medicago truncatula HOM05D003678 ORTHO05D004340 2.6e-18 97.4 143 46.2
ECA246G4346 Erigeron canadensis HOM05D000087 ORTHO05D009473 3.4e-18 97.1 111 52.3
ECA246G0440 Erigeron canadensis HOM05D003678 ORTHO05D004340 7.0e-16 89.4 67 56.7
BcaC09g48197 Brassica carinata HOM05D003678 ORTHO05D011193 1.2e-12 78.6 78 52.6
BcaC01g05020 Brassica carinata HOM05D003678 ORTHO05D004340 8.0e-12 75.9 132 39.4
A04p16990 Brassica napus HOM05D003678 ORTHO05D004340 1.8e-11 74.7 88 48.9
BcaC09g48198 Brassica carinata HOM05D003678 ORTHO05D004340 4.0e-11 73.6 80 52.5
ECA233G0490 Erigeron canadensis HOM05D003678 ORTHO05D004340 5.7e-10 69.7 83 45.8
MCO10G355 Micromonas commoda HOM05D003678 ORTHO05D004340 4.9e-09 66.6 112 37.5
BcaC05g28588 Brassica carinata HOM05D015584 ORTHO05D016118 6.4e-09 66.2 40 67.5
Pp3c17_19500 Physcomitrium patens HOM05D003678 ORTHO05D004340 1.8e-08 64.7 52 48.1
BcaC08g45872 Brassica carinata HOM05D005572 ORTHO05D032868 1.3e-06 58.5 31 80.6


User provided reference genes

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