Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0645901 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 1.0e-193 679.9 340 100.0
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 8.7e-108 394.4 339 63.1
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 2.8e-66 256.5 363 42.7
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 6.1e-61 238.8 364 41.2
Dinv15990 Davidia involucrata HOM05D001937 ORTHO05D003828 1.5e-59 234.2 353 41.4
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 2.2e-58 230.3 360 41.1
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 6.3e-58 228.8 364 40.1
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.8e-57 227.3 360 40.8
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 3.1e-57 226.5 356 40.2
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 1.5e-56 224.2 359 38.4
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 2.9e-55 219.9 365 39.5
HPP92_017203 Vanilla planifolia HOM05D001937 ORTHO05D003828 6.5e-55 218.8 341 39.9
Migut.B00560 Erythranthe guttata HOM05D001937 ORTHO05D003828 8.5e-55 218.4 363 38.6
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 7.2e-54 215.3 360 38.6
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 2.7e-53 213.4 362 38.4
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 3.6e-53 213.0 362 38.7
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 4.7e-53 212.6 364 37.6
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 6.1e-53 212.2 360 38.1
Solyc07g006820.4 Solanum lycopersicum HOM05D001937 ORTHO05D003828 3.0e-52 209.9 356 37.9
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 5.2e-52 209.1 356 38.8
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 5.2e-52 209.1 356 37.6
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 6.7e-52 208.8 360 39.4
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 2.6e-51 206.8 356 38.8
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 2.6e-51 206.8 357 37.8
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 2.2e-50 203.8 360 39.4
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 2.8e-50 203.4 357 37.8
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 4.8e-50 202.6 359 38.2
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 8.2e-50 201.8 357 38.4
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.1e-49 201.4 354 37.0
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 1.4e-49 201.1 355 37.2
FAN23G2404 Fragaria x ananassa HOM05D001937 ORTHO05D003828 3.1e-49 199.9 360 36.7
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 4.1e-49 199.5 362 38.4
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 5.3e-49 199.1 356 38.8
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 5.3e-49 199.1 354 36.7
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 5.3e-49 199.1 359 36.5
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 9.1e-49 198.4 356 36.8
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 1.2e-48 198.0 365 36.4
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 1.6e-48 197.6 363 38.8
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 1.6e-48 197.6 369 39.6
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 2.6e-48 196.8 373 35.9
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 1.3e-47 194.5 346 36.7
RcHm_v2.0_Chr5g0013481 Rosa chinensis HOM05D001937 ORTHO05D003828 2.2e-47 193.7 368 37.8
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 3.8e-47 193.0 368 36.7
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 1.5e-46 191.0 367 37.3
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 2.5e-46 190.3 362 37.8
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 4.2e-46 189.5 364 36.0
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 7.2e-46 188.7 367 36.2
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 9.4e-46 188.3 370 35.9
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 2.1e-45 187.2 359 36.2
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 3.6e-45 186.4 371 35.3
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 1.0e-44 184.9 364 35.4
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 1.0e-44 184.9 360 33.6
Aqoxy3G01595 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 1.8e-44 184.1 359 36.5
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 2.3e-44 183.7 361 36.8
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 3.0e-44 183.3 367 35.7
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 4.0e-44 183.0 423 31.9
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 4.0e-44 183.0 343 39.1
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 6.8e-44 182.2 368 35.6
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 8.8e-44 181.8 360 35.0
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 1.2e-43 181.4 369 35.5
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 1.2e-43 181.4 369 35.5
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 1.5e-43 181.0 367 34.6
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 1.5e-43 181.0 343 38.8
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 1.5e-43 181.0 368 34.2
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 3.4e-43 179.9 376 36.7
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 3.4e-43 179.9 368 36.7
SEGI_13781 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 3.4e-43 179.9 374 35.6
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 7.5e-43 178.7 376 36.7
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 9.8e-43 178.3 364 35.7
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 1.3e-42 177.9 372 34.7
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 2.2e-42 177.2 347 35.7
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 2.8e-42 176.8 367 35.7
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 4.8e-42 176.0 368 35.6
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 4.8e-42 176.0 364 34.3
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 8.3e-42 175.3 371 36.1
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 1.1e-41 174.9 370 35.4
Sed0011905 Sechium edule HOM05D001937 ORTHO05D003828 1.1e-41 174.9 364 35.4
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 1.4e-41 174.5 360 35.8
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 1.8e-41 174.1 342 35.1
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 4.1e-41 172.9 332 35.8
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 2.7e-40 170.2 365 35.6
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 5.9e-40 169.1 363 34.7
Cpa.g.sc471.1 Carica papaya HOM05D001937 ORTHO05D003828 1.0e-39 168.3 362 33.7
CDE08G0555 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 2.2e-39 167.2 357 34.7
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 1.9e-38 164.1 361 33.2
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 2.5e-38 163.7 371 31.8
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 2.5e-38 163.7 359 32.6
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.2e-37 161.4 359 33.4
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 2.1e-37 160.6 363 33.6
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 3.6e-37 159.8 359 32.6
Atru.chr3.3791 Acer truncatum HOM05D001937 ORTHO05D003828 3.0e-36 156.8 199 44.2
Aqoxy3G01486 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 1.3e-34 151.4 334 33.5
Atru.chr8.1123 Acer truncatum HOM05D001937 ORTHO05D003828 1.4e-33 147.9 307 33.2
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 1.4e-33 147.9 344 32.3
Lsat_1_v5_gn_0_31600 Lactuca sativa HOM05D001937 ORTHO05D003828 3.1e-33 146.7 147 53.1
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 1.2e-32 144.8 379 30.1
Prupe.1G009900 Prunus persica HOM05D001937 ORTHO05D003828 1.0e-31 141.7 328 34.5
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 2.3e-31 140.6 287 35.2
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 2.8e-29 133.7 371 29.4
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 2.8e-29 133.7 301 30.9
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 2.3e-28 130.6 366 30.6
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 2.3e-28 130.6 366 30.1
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 3.0e-28 130.2 364 27.5
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 3.0e-28 130.2 323 30.7
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 4.0e-28 129.8 176 45.5
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 6.8e-28 129.0 368 30.4
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 8.9e-28 128.6 300 29.7
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 8.9e-28 128.6 368 29.1
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 2.0e-27 127.5 367 29.2
AagrBONN_evm.TU.Sc2ySwM_117.3403 Anthoceros agrestis HOM05D001937 ORTHO05D003828 7.5e-27 125.6 373 30.8
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 9.8e-27 125.2 365 27.9
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 1.7e-26 124.4 368 28.8
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 2.9e-26 123.6 375 29.6
Lsat_1_v5_gn_4_144240 Lactuca sativa HOM05D001937 ORTHO05D003828 2.9e-26 123.6 122 55.7
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 3.7e-26 123.2 301 32.2
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 3.7e-26 123.2 300 34.7
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 6.4e-26 122.5 364 27.2
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 2.4e-25 120.6 303 32.3
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 2.4e-25 120.6 303 32.3
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 2.4e-25 120.6 303 32.3
CARHR094480 Cardamine hirsuta HOM05D001937 ORTHO05D003828 3.2e-25 120.2 383 27.9
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 5.4e-25 119.4 305 30.5
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 9.2e-25 118.6 304 30.3
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 9.2e-25 118.6 300 31.0
SMO118G0440 Selaginella moellendorffii HOM05D001937 ORTHO05D003828 1.2e-21 108.2 152 44.1
Lsat_1_v5_gn_5_102200 Lactuca sativa HOM05D001937 ORTHO05D003828 1.6e-21 107.8 109 56.9
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 2.6e-19 100.5 360 29.2
vmacro17328 Vaccinium macrocarpon HOM05D000907 ORTHO05D000753 7.5e-19 99.0 120 44.2
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 4.6e-16 89.7 357 25.2
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 4.0e-12 76.6 347 25.6
QL11p024034 Quercus lobata HOM05D001937 ORTHO05D003828 2.6e-11 73.9 139 36.0
CBR_g2821 Chara braunii HOM05D001937 ORTHO05D003828 7.1e-09 65.9 166 29.5
Aa31LG7G15320 Aethionema arabicum HOM05D001937 ORTHO05D003828 7.3e-06 55.8 79 46.8


User provided reference genes

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