Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0255200 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D005604 8.1e-261 903.3 479 100.0
Zm00001eb280740 Zea mays HOM05D000104 ORTHO05D005604 2.1e-168 596.3 439 73.6
HPP92_007983 Vanilla planifolia HOM05D002012 ORTHO05D001992 2.3e-61 240.7 556 37.6
TAR365G0556 Trochodendron aralioides HOM05D000104 ORTHO05D005604 9.8e-49 198.7 390 40.0
Nn3g21275 Nelumbo nucifera HOM05D000104 ORTHO05D005604 1.7e-48 198.0 311 44.1
TAR362G0998 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.1e-47 195.3 463 36.7
Potri.010G019150 Populus trichocarpa HOM05D000104 ORTHO05D005604 2.8e-43 180.6 326 44.2
Aqoxy5G00624 Aquilegia oxysepala HOM05D000104 ORTHO05D005604 1.8e-42 177.9 392 39.5
Atru.chr3.1960 Acer truncatum HOM05D000104 ORTHO05D005604 1.5e-41 174.9 406 39.7
GSVIVG01017820001 Vitis vinifera HOM05D000104 ORTHO05D005604 3.4e-41 173.7 257 49.4
Potri.008G195900 Populus trichocarpa HOM05D000104 ORTHO05D005604 5.8e-41 172.9 441 36.3
Glyma.17G022300 Glycine max HOM05D000104 ORTHO05D005604 7.5e-41 172.6 409 37.7
MBI19_g34717_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005604 7.5e-41 172.6 300 42.3
Phvul.003G100200 Phaseolus vulgaris HOM05D000104 ORTHO05D005604 2.2e-40 171.0 400 38.5
Glyma.07G252100 Glycine max HOM05D000104 ORTHO05D005604 1.4e-39 168.3 416 36.5
PGR042G2589 Punica granatum HOM05D000104 ORTHO05D005604 3.2e-39 167.2 300 43.7
Ca_21553_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005604 1.6e-38 164.9 422 36.3
Sabra08G0149100 Salix brachista HOM05D000104 ORTHO05D005604 3.5e-38 163.7 449 34.5
Manes.15G017800 Manihot esculenta HOM05D000104 ORTHO05D005604 6.0e-38 162.9 339 40.7
PSO801G0783 Papaver somniferum HOM05D000104 ORTHO05D005604 1.3e-37 161.8 549 32.1
Dinv36280 Davidia involucrata HOM05D000104 ORTHO05D005604 3.9e-37 160.2 366 37.7
Psat4g029520 Pisum sativum HOM05D000104 ORTHO05D005604 3.9e-37 160.2 314 39.8
Lalb_Chr13g0303901 Lupinus albus HOM05D000104 ORTHO05D005604 6.6e-37 159.5 247 45.7
Lalb_Chr12g0196421 Lupinus albus HOM05D000104 ORTHO05D005604 8.6e-37 159.1 245 46.5
Sed0001718 Sechium edule HOM05D000104 ORTHO05D005604 8.6e-37 159.1 211 51.2
TPR.G14962 Trifolium pratense HOM05D000104 ORTHO05D005604 1.5e-36 158.3 315 39.7
MELO3C006601.2 Cucumis melo HOM05D000104 ORTHO05D005604 2.5e-36 157.5 331 38.7
Duzib212G0880 Durio zibethinus HOM05D000104 ORTHO05D005604 4.3e-36 156.8 449 34.1
PSO339G1276 Papaver somniferum HOM05D000104 ORTHO05D005604 5.6e-36 156.4 463 33.3
Thecc.04G275900 Theobroma cacao HOM05D000104 ORTHO05D005604 5.6e-36 156.4 410 34.9
CsaV3_3G014070 Cucumis sativus L. HOM05D000104 ORTHO05D005604 1.2e-35 155.2 332 38.6
Gohir.A09G233050 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.2e-35 155.2 362 39.0
Prupe.1G143200 Prunus persica HOM05D000104 ORTHO05D005604 1.6e-35 154.8 421 36.3
ClCG05G005740 Citrullus lanatus HOM05D000104 ORTHO05D005604 8.1e-35 152.5 331 37.5
Cfa015506 Carpinus fangiana HOM05D000104 ORTHO05D005604 1.4e-34 151.8 482 33.4
CiPaw.02G087300 Carya illinoinensis HOM05D000104 ORTHO05D005604 2.3e-34 151.0 235 47.7
COL.COLO4_25219 Corchorus olitorius HOM05D000104 ORTHO05D005604 2.3e-34 151.0 471 32.5
CANSAT78G1941 Cannabis sativa HOM05D000104 ORTHO05D005604 3.1e-34 150.6 451 33.0
arahy.Tifrunner.gnm1.ann1.S83KV6 Arachis hypogaea HOM05D000104 ORTHO05D005604 4.0e-34 150.2 364 38.2
TWI53G1887 Tripterygium wilfordii HOM05D000104 ORTHO05D005604 2.0e-33 147.9 297 42.1
arahy.Tifrunner.gnm1.ann1.Z03QFY Arachis hypogaea HOM05D000104 ORTHO05D005604 2.6e-33 147.5 364 37.4
FAN22G0992 Fragaria x ananassa HOM05D000104 ORTHO05D005604 2.6e-33 147.5 414 36.7
arahy.Tifrunner.gnm1.ann1.Q30CKZ Arachis hypogaea HOM05D000104 ORTHO05D005604 3.4e-33 147.1 401 36.2
QL06p007127 Quercus lobata HOM05D000104 ORTHO05D005604 3.4e-33 147.1 487 33.3
FAN17G1482 Fragaria x ananassa HOM05D000104 ORTHO05D005604 5.8e-33 146.4 413 35.8
DCAR_013049 Daucus carota HOM05D000104 ORTHO05D005604 9.9e-33 145.6 506 32.4
arahy.Tifrunner.gnm1.ann1.N8S0IJ Arachis hypogaea HOM05D000104 ORTHO05D005604 1.3e-32 145.2 359 38.4
Duzib151G0282 Durio zibethinus HOM05D000104 ORTHO05D005604 1.7e-32 144.8 514 30.9
Medtr4g118720 Medicago truncatula HOM05D000104 ORTHO05D005604 1.7e-32 144.8 423 32.9
RcHm_v2.0_Chr4g0420741 Rosa chinensis HOM05D000104 ORTHO05D005604 1.7e-32 144.8 495 31.1
THA.LOC104820235 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 1.7e-32 144.8 268 44.0
Actinidia16312 Actinidia chinensis HOM05D000104 ORTHO05D005604 2.2e-32 144.4 453 33.3
Haze_01047 Corylus avellana HOM05D000104 ORTHO05D005604 2.2e-32 144.4 416 34.9
Lj4g0028061 Lotus japonicus HOM05D000104 ORTHO05D005604 1.1e-31 142.1 320 38.1
Lj1A357G13 Lonicera japonica HOM05D000104 ORTHO05D005604 7.1e-31 139.4 467 31.9
Aa31LG5G20580 Aethionema arabicum HOM05D000104 ORTHO05D005604 9.2e-31 139.0 302 41.4
THA.LOC104802562 Tarenaya hassleriana HOM05D000104 ORTHO05D005604 1.6e-30 138.3 261 43.7
Gohir.D10G165750 Gossypium hirsutum HOM05D000104 ORTHO05D005604 2.7e-30 137.5 378 35.4
AUR62042660 Chenopodium quinoa HOM05D000104 ORTHO05D005604 4.6e-30 136.7 249 43.0
Gorai.011G185100 Gossypium raimondii HOM05D000104 ORTHO05D005604 6.0e-30 136.3 378 35.2
CARHR121200 Cardamine hirsuta HOM05D000104 ORTHO05D005604 7.8e-30 136.0 298 41.3
Ah.13g074440 Amaranthus hybridus HOM05D000404 ORTHO05D005791 1.0e-29 135.6 288 37.5
Gohir.A10G101880 Gossypium hirsutum HOM05D000104 ORTHO05D005604 1.7e-29 134.8 378 35.2
Thhalv10016121m.g Eutrema salsugineum HOM05D000104 ORTHO05D005604 2.3e-29 134.4 467 32.5
Sp4g21400 Schrenkiella parvula HOM05D000104 ORTHO05D005604 3.0e-29 134.0 222 45.9
EL10Ac3g06521 Beta vulgaris HOM05D000104 ORTHO05D005604 6.6e-29 132.9 333 39.0
Cfa015504 Carpinus fangiana HOM05D000104 ORTHO05D005604 1.1e-28 132.1 91 74.7
CDE05G2634 Ceratophyllum demersum HOM05D000104 ORTHO05D005604 1.1e-28 132.1 265 43.4
Gorai.006G257000 Gossypium raimondii HOM05D000104 ORTHO05D005604 1.5e-28 131.7 354 35.0
arahy.Tifrunner.gnm1.ann1.Z04G07 Arachis hypogaea HOM05D000104 ORTHO05D005604 4.3e-28 130.2 244 43.9
Dinv08033 Davidia involucrata HOM05D000104 ORTHO05D005604 9.6e-28 129.0 422 33.6
BcaB01g03644 Brassica carinata HOM05D000104 ORTHO05D005604 2.1e-27 127.9 229 43.2
Cc00_g10730 Coffea canephora HOM05D000104 ORTHO05D005604 2.8e-27 127.5 167 49.7
arahy.Tifrunner.gnm1.ann1.Q10S7I Arachis hypogaea HOM05D000104 ORTHO05D005604 3.6e-27 127.1 244 43.4
AT2G28290 Arabidopsis thaliana HOM05D000104 ORTHO05D005604 4.7e-27 126.7 264 40.2
A03p21840 Brassica napus HOM05D000104 ORTHO05D005604 6.2e-27 126.3 228 43.4
BraA03t11420Z Brassica rapa HOM05D000104 ORTHO05D005604 6.2e-27 126.3 228 43.9
Gohir.D09G234100 Gossypium hirsutum HOM05D000104 ORTHO05D005604 6.2e-27 126.3 442 31.2
C03p25910 Brassica napus HOM05D000104 ORTHO05D005604 8.1e-27 125.9 231 44.2
FAN07G2961 Fragaria x ananassa HOM05D000104 ORTHO05D005604 8.1e-27 125.9 481 32.4
Cc00_g33690 Coffea canephora HOM05D000104 ORTHO05D005604 1.4e-26 125.2 91 71.4
ATR1101G061 Amborella trichopoda HOM05D000104 ORTHO05D005604 1.8e-26 124.8 266 36.5
SGA_v2.0_scaffold8G04607 Striga asiatica HOM05D000104 ORTHO05D005604 2.4e-26 124.4 140 53.6
Nitab4.5_0000492g0040 Nicotiana tabacum HOM05D000104 ORTHO05D005604 5.2e-26 123.2 91 69.2
BolC3t14976H Brassica oleracea HOM05D000104 ORTHO05D005604 8.9e-26 122.5 269 40.5
ECA233G1169 Erigeron canadensis HOM05D000104 ORTHO05D005604 2.6e-25 120.9 187 46.5
Peaxi162Scf00029g00307 Petunia axillaris HOM05D000104 ORTHO05D005604 2.6e-25 120.9 165 46.7
Lj6g0025055 Lotus japonicus HOM05D000104 ORTHO05D005604 5.8e-25 119.8 242 39.7
Sopen11g023970 Solanum pennellii HOM05D000104 ORTHO05D005604 7.6e-25 119.4 176 46.6
Solyc11g062010.3 Solanum lycopersicum HOM05D000104 ORTHO05D005604 1.3e-24 118.6 176 46.6
Migut.D00580 Erythranthe guttata HOM05D000104 ORTHO05D005604 2.9e-24 117.5 288 39.9
FvH4_4g17030 Fragaria vesca HOM05D000104 ORTHO05D005604 2.9e-24 117.5 418 33.0
unitig_32.g11765 Utricularia gibba HOM05D000186 ORTHO05D002329 4.9e-24 116.7 89 67.4
CAN.G71.7 Capsicum annuum HOM05D000104 ORTHO05D005604 1.4e-23 115.2 189 43.4
Nitab4.5_0006542g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005604 1.4e-23 115.2 263 36.1
Lsat_1_v5_gn_8_137440 Lactuca sativa HOM05D000104 ORTHO05D005604 1.3e-21 108.6 199 42.2
Ah.04g153970 Amaranthus hybridus HOM05D000104 ORTHO05D005604 3.9e-21 107.1 281 36.7
Nitab4.5_0002766g0090 Nicotiana tabacum HOM05D000455 ORTHO05D010375 3.9e-21 107.1 99 55.6
TPR.G14955 Trifolium pratense HOM05D029028 ORTHO05D030699 8.7e-21 105.9 354 32.8
vmacro04191 Vaccinium macrocarpon HOM05D000104 ORTHO05D005604 1.9e-20 104.8 509 30.3
Nitab4.5_0004806g0040 Nicotiana tabacum HOM05D000455 ORTHO05D000434 7.3e-20 102.8 87 59.8
BcaB02g10070 Brassica carinata HOM05D000484 ORTHO05D005604 3.6e-19 100.5 68 75.0
HanXRQChr17g0554821 Helianthus annuus HOM05D000104 ORTHO05D005604 8.1e-19 99.4 248 37.9
TAR365G0890 Trochodendron aralioides HOM05D000104 ORTHO05D005604 1.8e-18 98.2 343 30.0
Rhsim13G0223800 Rhododendron simsii HOM05D000104 ORTHO05D005604 1.3e-16 92.0 380 31.6
MD13G1174700 Malus domestica HOM05D000104 ORTHO05D005604 2.9e-16 90.9 415 29.6
arahy.Tifrunner.gnm1.ann1.E69ZFU Arachis hypogaea HOM05D000104 ORTHO05D005604 9.3e-15 85.9 57 80.7
Mapoly0171s0025 Marchantia polymorpha HOM05D000104 ORTHO05D005604 9.3e-15 85.9 86 51.2
Cpa.g.sc16.100 Carica papaya HOM05D000104 ORTHO05D005604 2.1e-14 84.7 436 28.4
FAN12G0301 Fragaria x ananassa HOM05D000104 ORTHO05D005604 4.6e-14 83.6 55 81.8
MD16G1176400 Malus domestica HOM05D000104 ORTHO05D005604 6.0e-14 83.2 383 29.2
arahy.Tifrunner.gnm1.ann1.0XZV5D Arachis hypogaea HOM05D000846 ORTHO05D001340 2.8e-11 74.3 100 51.0
CSS0020473 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005604 3.6e-11 73.9 305 31.5
Pp3c14_90 Physcomitrium patens HOM05D000104 ORTHO05D005604 3.4e-09 67.4 208 30.3
SHI00293 Sapria himalayana HOM05D000691 ORTHO05D000378 1.3e-08 65.5 86 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1449 Anthoceros agrestis HOM05D000104 ORTHO05D005604 8.4e-08 62.8 253 28.5
Lj1C354G8 Lonicera japonica HOM05D000104 ORTHO05D005604 1.9e-07 61.6 289 29.1
AUR62040388 Chenopodium quinoa HOM05D000104 ORTHO05D005604 2.1e-06 58.2 202 30.7


User provided reference genes

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