Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 3.3e-224 781.6 441 100.0
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 2.0e-144 516.5 339 74.3
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.2e-143 513.1 358 69.6
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 3.7e-143 512.3 338 73.1
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 2.4e-142 509.6 335 73.4
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 3.1e-142 509.2 338 72.8
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 7.0e-142 508.1 446 67.5
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.0e-141 506.5 335 73.7
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 2.6e-141 506.1 336 74.1
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 4.5e-141 505.4 338 73.4
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 4.5e-141 505.4 356 70.5
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 1.7e-140 503.4 341 73.0
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 3.8e-140 502.3 359 69.1
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 5.0e-140 501.9 338 72.5
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 6.5e-140 501.5 339 72.9
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 8.5e-140 501.1 335 72.8
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 8.5e-140 501.1 335 73.1
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.1e-139 500.7 334 71.6
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.5e-139 500.4 343 71.7
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.5e-139 500.4 343 71.7
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.5e-139 500.4 338 72.2
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.5e-139 500.4 336 73.2
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 2.5e-139 499.6 335 71.6
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 3.2e-139 499.2 335 72.8
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.2e-139 499.2 339 72.3
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 7.2e-139 498.0 338 73.4
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 9.4e-139 497.7 335 72.5
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.2e-138 497.3 339 72.3
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 2.1e-138 496.5 335 72.2
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 4.7e-138 495.4 335 71.9
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 6.1e-138 495.0 345 71.6
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 8.0e-138 494.6 359 68.2
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.4e-137 493.8 335 71.6
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.8e-137 493.4 340 71.5
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 3.0e-137 492.7 383 65.3
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.2e-137 491.9 343 70.8
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 5.2e-137 491.9 335 71.6
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 6.8e-137 491.5 353 69.1
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.8e-137 491.1 341 71.3
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 8.8e-137 491.1 338 72.8
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.2e-136 490.7 342 70.8
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.2e-136 490.7 332 72.6
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.0e-136 490.0 340 71.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 2.0e-136 490.0 342 70.8
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 3.4e-136 489.2 463 65.9
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 5.7e-136 488.4 330 71.5
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 5.7e-136 488.4 338 70.7
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 7.5e-136 488.0 336 71.4
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 9.7e-136 487.6 344 70.1
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.3e-135 487.3 354 68.6
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 1.3e-135 487.3 344 70.6
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 1.7e-135 486.9 340 72.1
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.7e-135 486.9 342 69.9
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 3.7e-135 485.7 447 68.2
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.7e-135 485.7 342 70.8
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 3.7e-135 485.7 340 70.0
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 6.3e-135 485.0 371 66.6
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 8.3e-135 484.6 337 72.1
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 5.3e-134 481.9 354 68.6
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 5.9e-133 478.4 322 72.4
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 1.0e-132 477.6 336 70.5
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.5e-131 473.8 340 69.4
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.2e-131 472.2 359 66.9
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.2e-131 472.2 332 71.4
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 7.2e-131 471.5 365 66.6
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 3.6e-130 469.2 342 71.3
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 6.1e-130 468.4 342 71.3
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 8.0e-130 468.0 328 70.1
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 3.0e-129 466.1 339 67.0
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 5.2e-129 465.3 333 69.7
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 5.2e-129 465.3 383 63.7
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 5.2e-129 465.3 318 71.1
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 5.7e-128 461.8 335 69.6
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.3e-127 460.7 360 66.1
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 4.8e-127 458.8 392 61.2
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.8e-126 456.8 337 69.1
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.2e-125 454.1 389 62.0
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.7e-125 453.0 345 65.8
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 4.5e-125 452.2 345 66.1
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.0e-124 451.1 391 60.1
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 6.6e-124 448.4 338 64.8
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.1e-123 447.6 339 65.2
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 6.1e-122 441.8 341 63.3
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.8e-121 440.3 339 64.3
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.3e-121 439.9 350 64.6
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 6.8e-121 438.3 384 58.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.2e-120 437.6 356 62.9
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 4.4e-120 435.6 360 64.4
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 7.5e-120 434.9 337 64.1
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 2.2e-119 433.3 336 63.7
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 2.2e-119 433.3 335 64.2
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.8e-119 433.0 334 65.0
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.0e-118 428.3 261 77.0
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 1.2e-117 427.6 353 61.5
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 2.7e-117 426.4 342 62.3
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 4.5e-117 425.6 343 61.5
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 7.8e-117 424.9 353 61.2
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 1.7e-116 423.7 341 62.2
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 2.3e-116 423.3 338 63.0
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.2e-114 417.5 339 62.2
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 3.6e-114 416.0 355 59.4
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 4.0e-113 412.5 348 61.2
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 8.9e-113 411.4 311 66.9
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 9.8e-112 407.9 298 67.8
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 4.9e-111 405.6 352 59.4
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.0e-109 400.2 307 63.2
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 3.0e-108 396.4 304 64.1
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 4.3e-107 392.5 205 89.8
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.8e-106 389.8 332 59.0
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 8.9e-105 384.8 319 63.3
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 3.0e-100 369.8 298 65.4
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 5.1e-100 369.0 323 59.8
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 2.1e-98 363.6 224 74.6
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 8.1e-98 361.7 231 73.6
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 6.4e-87 325.5 352 51.1
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 4.6e-85 319.3 364 49.5
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 8.4e-79 298.5 287 53.7
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 6.2e-74 282.3 242 54.5
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 4.5e-72 276.2 229 63.3
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.9e-71 273.5 354 46.3
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.1e-67 261.5 374 44.4
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.5e-61 240.0 228 53.1
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 2.9e-55 220.3 135 71.9
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 1.9e-54 217.6 256 50.8
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.1e-45 187.6 264 59.1
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 6.7e-44 182.6 107 77.6
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 1.8e-33 147.9 158 53.8
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.0e-28 132.1 77 77.9
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 3.0e-28 130.6 244 37.3
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 7.0e-25 119.4 80 70.0
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.0e-23 115.5 254 32.7
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 6.8e-20 102.8 109 57.8
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.7e-18 97.1 80 62.5
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 1.4e-17 95.1 294 26.2
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 8.0e-13 79.3 52 71.2


User provided reference genes

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