Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 0.0e+00 2034.2 1012 100.0
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 0.0e+00 1372.8 985 72.6
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.1e-246 857.4 731 56.8
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 5.3e-238 828.6 784 51.9
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 2.7e-237 826.2 942 48.8
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 7.2e-235 818.1 974 46.4
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.2e-234 817.4 938 47.9
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 1.6e-234 817.0 1015 45.6
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.1e-227 794.3 926 47.3
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 4.2e-227 792.3 732 53.7
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.6e-226 790.4 759 52.3
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 1.6e-226 790.4 962 46.5
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 2.1e-226 790.0 943 45.8
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 1.8e-225 786.9 733 54.0
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 2.3e-225 786.6 868 48.7
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 4.0e-225 785.8 965 45.5
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 1.2e-224 784.3 988 44.3
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 1.5e-224 783.9 981 45.0
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 6.3e-223 778.5 727 53.4
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 1.4e-222 777.3 988 45.3
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.4e-222 776.5 980 45.1
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.6e-221 773.9 727 52.4
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 3.8e-220 769.2 896 47.9
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 3.3e-219 766.1 787 50.8
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 4.3e-219 765.8 727 52.0
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 4.7e-218 762.3 973 43.8
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 5.2e-217 758.8 978 43.7
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 5.2e-217 758.8 1009 43.5
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.2e-216 757.7 736 52.7
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.0e-216 756.9 734 52.5
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 2.6e-216 756.5 726 52.2
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 5.8e-216 755.4 752 50.7
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 2.9e-215 753.1 1031 42.9
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 6.4e-215 751.9 727 51.6
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 6.4e-215 751.9 735 51.2
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 1.1e-214 751.1 965 45.5
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 1.2e-213 747.7 728 52.5
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 1.6e-213 747.3 752 51.2
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 1.6e-213 747.3 865 47.6
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 2.0e-213 746.9 725 51.9
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 4.6e-213 745.7 891 46.0
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 6.0e-213 745.3 887 45.4
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 1.7e-212 743.8 822 47.2
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 8.6e-212 741.5 752 50.8
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 4.3e-211 739.2 996 44.3
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 4.3e-211 739.2 729 52.5
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 1.2e-210 737.6 742 50.1
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 3.6e-210 736.1 987 43.7
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 3.6e-210 736.1 777 47.4
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 6.2e-210 735.3 748 50.0
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 6.2e-210 735.3 779 49.7
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 8.0e-210 734.9 729 50.3
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 2.3e-209 733.4 725 51.3
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 2.3e-209 733.4 721 51.5
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 3.1e-209 733.0 940 43.4
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 8.9e-209 731.5 752 50.4
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.5e-208 730.7 733 50.9
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 4.4e-208 729.2 758 50.9
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 2.9e-207 726.5 785 49.9
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 1.1e-206 724.5 780 48.8
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.4e-206 724.2 902 45.7
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 1.9e-206 723.8 745 50.5
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 1.9e-206 723.8 730 51.1
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 9.2e-206 721.5 721 50.5
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 3.9e-204 716.1 734 51.6
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 3.9e-204 716.1 730 50.5
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 6.6e-204 715.3 791 48.7
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.5e-203 714.1 877 44.1
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 3.3e-203 713.0 730 50.8
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 4.7e-202 709.1 700 52.1
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 1.5e-200 704.1 703 50.6
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 9.9e-200 701.4 742 48.4
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 1.9e-198 697.2 752 49.1
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 5.4e-198 695.7 809 48.6
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 1.9e-195 687.2 677 51.4
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 6.8e-193 678.7 532 63.0
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 2.9e-191 673.3 968 42.4
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 4.6e-189 666.0 882 44.1
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 3.5e-181 639.8 552 56.3
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 6.6e-180 635.6 557 54.4
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 2.1e-178 630.6 793 43.9
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.2e-165 588.2 1016 37.7
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.3e-156 558.1 615 48.3
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 4.1e-145 520.0 719 40.6
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 1.2e-144 518.5 697 41.2
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 7.7e-144 515.8 477 54.1
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 4.8e-130 469.9 531 48.0
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 5.5e-118 429.9 791 34.0
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 1.0e-95 355.9 364 50.8
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 5.6e-94 350.1 548 39.8
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 5.3e-68 263.8 827 28.3
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 6.0e-64 250.4 489 36.0
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 2.8e-53 214.9 337 38.0
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.3e-50 206.1 156 56.4
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 5.8e-43 180.6 182 53.8
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.0e-39 169.9 198 46.5
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 2.6e-35 155.2 144 48.6
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 9.4e-33 146.7 95 65.3
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 2.7e-32 145.2 162 49.4
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 8.2e-29 133.7 167 44.9
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 5.9e-27 127.5 167 43.1
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 1.4e-25 122.9 71 80.3
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.6e-24 119.4 117 48.7
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 2.6e-22 112.1 72 59.7
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 5.7e-22 110.9 145 45.5
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 7.4e-22 110.5 75 57.3
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 2.9e-18 98.6 392 23.5
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 6.7e-15 87.4 72 54.2
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 2.0e-14 85.9 72 52.8
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.7e-13 82.8 73 56.2
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 4.7e-08 64.7 64 48.4
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 6.1e-08 64.3 192 26.0
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 2.3e-07 62.4 185 24.3
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 2.3e-07 62.4 185 28.1
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 2.3e-07 62.4 193 27.5
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 3.0e-07 62.0 192 24.0
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 4.0e-07 61.6 193 25.4
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 4.0e-07 61.6 193 24.9
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 6.8e-07 60.8 191 25.7
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 6.8e-07 60.8 193 24.9
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 8.8e-07 60.5 189 26.5
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 8.8e-07 60.5 193 24.9
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 8.8e-07 60.5 193 25.4
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.0e-06 59.3 230 24.3
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.0e-06 59.3 230 24.3
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 2.0e-06 59.3 187 25.1
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 2.0e-06 59.3 193 25.4
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 2.0e-06 59.3 186 25.8
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 2.6e-06 58.9 290 25.9
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 2.6e-06 58.9 195 25.1
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 2.6e-06 58.9 193 25.4
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 2.6e-06 58.9 196 25.0
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 3.4e-06 58.5 222 23.0
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 3.4e-06 58.5 186 26.3
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 3.4e-06 58.5 188 25.5
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 4.4e-06 58.2 273 22.3
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 4.4e-06 58.2 185 24.9
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 4.4e-06 58.2 195 25.6
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 5.7e-06 57.8 191 25.7
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 5.7e-06 57.8 185 24.3
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 5.7e-06 57.8 195 25.6
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 9.8e-06 57.0 188 25.5
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 9.8e-06 57.0 185 24.9


User provided reference genes

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