Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0775300 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 0.0e+00 1125.9 601 100.0
Zm00001eb059170 Zea mays HOM05D005848 ORTHO05D007532 4.9e-271 937.6 657 73.4
Thecc.08G026700 Theobroma cacao HOM05D005848 ORTHO05D007532 3.8e-223 778.5 589 67.4
Sabra02G0198400 Salix brachista HOM05D005848 ORTHO05D007532 4.2e-222 775.0 597 66.5
FAN15G3081 Fragaria x ananassa HOM05D005848 ORTHO05D007532 1.6e-221 773.1 597 67.0
MBI16_g31221_MAGBIO Magnolia biondii HOM05D005848 ORTHO05D007532 2.1e-221 772.7 617 63.5
Manes.18G027000 Manihot esculenta HOM05D005848 ORTHO05D007532 2.7e-221 772.3 490 74.7
FvH4_2g39810 Fragaria vesca HOM05D005848 ORTHO05D007532 7.9e-221 770.8 596 66.4
FAN20G0176 Fragaria x ananassa HOM05D005848 ORTHO05D007532 7.9e-221 770.8 593 65.1
FAN20G3094 Fragaria x ananassa HOM05D005848 ORTHO05D007532 7.9e-221 770.8 593 65.1
Potri.002G260700 Populus trichocarpa HOM05D005848 ORTHO05D007532 1.8e-220 769.6 596 66.1
Prupe.1G379500 Prunus persica HOM05D005848 ORTHO05D007532 2.3e-220 769.2 597 66.7
HPP92_012274 Vanilla planifolia HOM05D005848 ORTHO05D007532 2.3e-220 769.2 599 65.1
Gorai.002G128000 Gossypium raimondii HOM05D005848 ORTHO05D007532 6.7e-220 767.7 620 64.2
Gohir.D01G104100 Gossypium hirsutum HOM05D005848 ORTHO05D007532 1.5e-219 766.5 620 64.0
RcHm_v2.0_Chr6g0301031 Rosa chinensis HOM05D005848 ORTHO05D007532 1.5e-219 766.5 598 65.4
MD08G1031900 Malus domestica HOM05D005848 ORTHO05D007532 1.9e-219 766.1 597 66.5
Gohir.A01G115800 Gossypium hirsutum HOM05D005848 ORTHO05D007532 2.5e-219 765.8 602 65.3
FAN27G0156 Fragaria x ananassa HOM05D005848 ORTHO05D007532 3.3e-219 765.4 596 66.1
Duzib116G0609 Durio zibethinus HOM05D005848 ORTHO05D007532 5.6e-219 764.6 594 64.8
arahy.Tifrunner.gnm1.ann1.K656SJ Arachis hypogaea HOM05D005848 ORTHO05D007532 9.6e-219 763.8 601 63.4
arahy.Tifrunner.gnm1.ann1.R41T5G Arachis hypogaea HOM05D005848 ORTHO05D007532 9.6e-219 763.8 601 63.4
CSS0006033 Camellia sinensis var. sinensis HOM05D005848 ORTHO05D007532 1.3e-218 763.5 543 70.3
Sed0003570 Sechium edule HOM05D005848 ORTHO05D007532 2.1e-218 762.7 599 64.4
Cpa.g.sc36.76 Carica papaya HOM05D005848 ORTHO05D007532 2.8e-218 762.3 597 64.3
CsaV3_2G028680 Cucumis sativus L. HOM05D005848 ORTHO05D007532 8.1e-218 760.8 601 63.4
Aqoxy6G01108 Aquilegia oxysepala HOM05D005848 ORTHO05D007532 1.1e-217 760.4 598 64.2
TAR381G1506 Trochodendron aralioides HOM05D005848 ORTHO05D007532 1.1e-217 760.4 613 63.3
QL02p008596 Quercus lobata HOM05D005848 ORTHO05D007532 2.4e-217 759.2 612 64.7
CAN.G1226.12 Capsicum annuum HOM05D005848 ORTHO05D007532 3.1e-217 758.8 600 65.3
MD15G1027800 Malus domestica HOM05D005848 ORTHO05D007532 4.0e-217 758.4 597 65.8
Nitab4.5_0005373g0030 Nicotiana tabacum HOM05D005848 ORTHO05D007532 5.3e-217 758.1 605 65.8
Glyma.17G250400 Glycine max HOM05D005848 ORTHO05D007532 6.9e-217 757.7 592 64.0
Atru.chr13.482 Acer truncatum HOM05D005848 ORTHO05D007532 1.2e-216 756.9 489 77.3
DCAR_020974 Daucus carota HOM05D005848 ORTHO05D007532 4.5e-216 755.0 487 75.6
MELO3C010940.2 Cucumis melo HOM05D005848 ORTHO05D007532 5.8e-216 754.6 600 63.5
GSVIVG01009707001 Vitis vinifera HOM05D005848 ORTHO05D007532 5.8e-216 754.6 483 74.1
Lj5g0008078 Lotus japonicus HOM05D005848 ORTHO05D007532 7.6e-216 754.2 597 66.0
TWI56G0568 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 1.3e-215 753.4 600 64.5
PGR031G0193 Punica granatum HOM05D005848 ORTHO05D007532 1.7e-215 753.1 614 63.5
Phvul.001G014532 Phaseolus vulgaris HOM05D005848 ORTHO05D007532 2.2e-215 752.7 589 64.5
Peaxi162Scf00417g01212 Petunia axillaris HOM05D005848 ORTHO05D007532 3.8e-215 751.9 621 63.1
Cfa018151 Carpinus fangiana HOM05D005848 ORTHO05D007532 4.9e-215 751.5 628 62.6
Oeu049954.1 Olea europaea HOM05D005848 ORTHO05D007532 4.9e-215 751.5 497 75.5
PSO675G8513 Papaver somniferum HOM05D005848 ORTHO05D007532 4.9e-215 751.5 484 75.6
Sopen04g033930 Solanum pennellii HOM05D005848 ORTHO05D007532 4.9e-215 751.5 492 72.6
Actinidia22546 Actinidia chinensis HOM05D005848 ORTHO05D007532 8.4e-215 750.7 491 73.5
Ciclev10003946m.g Citrus clementina HOM05D005848 ORTHO05D007532 8.4e-215 750.7 491 73.3
Dinv36081 Davidia involucrata HOM05D005848 ORTHO05D007532 8.4e-215 750.7 604 62.9
Glyma.14G075000 Glycine max HOM05D005848 ORTHO05D007532 8.4e-215 750.7 590 63.7
PSO541G0294 Papaver somniferum HOM05D005848 ORTHO05D007532 1.1e-214 750.4 485 75.7
vmacro11198 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 1.1e-214 750.4 599 64.1
CiPaw.16G056600 Carya illinoinensis HOM05D005848 ORTHO05D007532 1.4e-214 750.0 595 63.7
Nitab4.5_0006280g0010 Nicotiana tabacum HOM05D005848 ORTHO05D007532 1.4e-214 750.0 606 64.5
TWI36G0400 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 1.9e-214 749.6 603 63.2
Nn1g04993 Nelumbo nucifera HOM05D005848 ORTHO05D007532 2.4e-214 749.2 593 62.9
Migut.C00727 Erythranthe guttata HOM05D005848 ORTHO05D007532 3.2e-214 748.8 605 64.6
VMungo0647G1182 Vigna mungo HOM05D005848 ORTHO05D007532 3.2e-214 748.8 589 63.0
Eucgr.F01897 Eucalyptus grandis HOM05D005848 ORTHO05D007532 7.1e-214 747.7 603 63.3
Rhsim07G0239300 Rhododendron simsii HOM05D005848 ORTHO05D007532 2.1e-213 746.1 487 72.7
THA.LOC104809061 Tarenaya hassleriana HOM05D005848 ORTHO05D007532 2.1e-213 746.1 601 62.6
Solyc04g080340.3 Solanum lycopersicum HOM05D005848 ORTHO05D007532 2.7e-213 745.7 492 74.4
CANSAT35G0174 Cannabis sativa HOM05D005848 ORTHO05D007532 3.5e-213 745.3 616 62.5
Ca_13375_v3 Cicer arietinum L. HOM05D005848 ORTHO05D007532 3.5e-213 745.3 607 61.8
Haze_17969 Corylus avellana HOM05D005848 ORTHO05D007532 3.5e-213 745.3 598 63.7
ClCG08G015110 Citrullus lanatus HOM05D005848 ORTHO05D007532 4.6e-213 745.0 618 61.5
vmacro04526 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 6.0e-213 744.6 599 63.8
SGA_v2.0_scaffold54G19521 Striga asiatica HOM05D005848 ORTHO05D007532 1.3e-212 743.4 606 61.9
SalBow7G2715 Salvia bowleyana HOM05D005848 ORTHO05D007532 2.3e-212 742.7 488 72.3
Lalb_Chr14g0369301 Lupinus albus HOM05D005848 ORTHO05D007532 3.0e-212 742.3 597 62.6
Lj4A40T46 Lonicera japonica HOM05D005848 ORTHO05D007532 3.9e-212 741.9 598 64.5
A07p28980 Brassica napus HOM05D005848 ORTHO05D007532 5.1e-212 741.5 593 62.2
BraA07t30539Z Brassica rapa HOM05D005848 ORTHO05D007532 5.1e-212 741.5 593 62.2
PGSC0003DMG400004542 Solanum tuberosum HOM05D005848 ORTHO05D007532 1.1e-211 740.3 492 74.6
Psat6g008800 Pisum sativum HOM05D005848 ORTHO05D007532 1.5e-211 740.0 590 64.9
TPR.G20173 Trifolium pratense HOM05D005848 ORTHO05D007532 2.5e-211 739.2 595 64.5
BraA07t31621Z Brassica rapa HOM05D005848 ORTHO05D007532 4.3e-211 738.4 486 73.3
Sc02g0006150 Simmondsia chinensis HOM05D005848 ORTHO05D007532 4.3e-211 738.4 596 62.2
A07p40790 Brassica napus HOM05D005848 ORTHO05D007532 9.6e-211 737.3 486 73.0
CDE01G0181 Ceratophyllum demersum HOM05D005848 ORTHO05D007532 2.1e-210 736.1 504 69.2
Sp5g30360 Schrenkiella parvula HOM05D005848 ORTHO05D007532 2.1e-210 736.1 595 62.0
BcaB02g07015 Brassica carinata HOM05D005848 ORTHO05D007532 4.8e-210 734.9 477 73.2
C06p49180 Brassica napus HOM05D005848 ORTHO05D007532 1.1e-209 733.8 486 72.6
Thhalv10018304m.g Eutrema salsugineum HOM05D005848 ORTHO05D007532 1.8e-209 733.0 595 61.8
BolC6t39951H Brassica oleracea HOM05D005848 ORTHO05D007532 2.4e-209 732.6 486 72.4
ECA247G2683 Erigeron canadensis HOM05D005848 ORTHO05D007532 3.1e-209 732.3 492 74.4
HanXRQChr02g0042111 Helianthus annuus HOM05D005848 ORTHO05D007532 3.1e-209 732.3 482 74.5
Carub.0002s2201 Capsella rubella HOM05D005848 ORTHO05D007532 6.9e-209 731.1 594 61.6
Aa31LG4G5410 Aethionema arabicum HOM05D005848 ORTHO05D007532 1.2e-208 730.3 604 60.8
CARHR068530 Cardamine hirsuta HOM05D005848 ORTHO05D007532 1.2e-208 730.3 603 60.9
Hund17082 Selenicereus undatus HOM05D005848 ORTHO05D007532 2.0e-208 729.6 598 62.0
AL2G35110 Arabidopsis lyrata HOM05D005848 ORTHO05D007532 2.6e-208 729.2 594 61.4
Lsat_1_v5_gn_1_17721 Lactuca sativa HOM05D005848 ORTHO05D007532 3.4e-208 728.8 599 62.9
AUR62013733 Chenopodium quinoa HOM05D005848 ORTHO05D007532 5.8e-208 728.0 598 63.2
COL.COLO4_26317 Corchorus olitorius HOM05D005848 ORTHO05D007532 5.8e-208 728.0 545 66.6
AT1G75200 Arabidopsis thaliana HOM05D005848 ORTHO05D007532 7.6e-208 727.6 594 61.3
Ah.05g173260 Amaranthus hybridus HOM05D005848 ORTHO05D007532 1.3e-207 726.9 600 62.5
EL10Ac1g00774 Beta vulgaris HOM05D005848 ORTHO05D007532 8.4e-207 724.2 628 59.7
SMO119G0034 Selaginella moellendorffii HOM05D005848 ORTHO05D007532 3.5e-205 718.8 615 59.3
C06p32750 Brassica napus HOM05D005848 ORTHO05D007532 2.3e-204 716.1 485 70.9
BolC6t38398H Brassica oleracea HOM05D005848 ORTHO05D007532 1.9e-203 713.0 485 70.7
Mapoly0010s0191 Marchantia polymorpha HOM05D005848 ORTHO05D007532 7.6e-200 701.0 625 56.5
ATR0733G119 Amborella trichopoda HOM05D005848 ORTHO05D007532 1.3e-199 700.3 514 69.8
Pp3c8_14160 Physcomitrium patens HOM05D005848 ORTHO05D007532 2.9e-199 699.1 631 55.8
unitig_37.g12994 Utricularia gibba HOM05D005848 ORTHO05D007532 5.0e-199 698.4 595 60.3
AagrBONN_evm.TU.Sc2ySwM_362.2225 Anthoceros agrestis HOM05D005848 ORTHO05D007532 8.7e-196 687.6 624 55.9
arahy.Tifrunner.gnm1.ann1.U1EDB6 Arachis hypogaea HOM05D005848 ORTHO05D007532 6.1e-189 664.8 604 57.8
Sed0016731 Sechium edule HOM05D005848 ORTHO05D007532 1.1e-187 660.6 554 63.2
AUR62023420 Chenopodium quinoa HOM05D005848 ORTHO05D007532 2.6e-176 622.9 598 57.7
vmacro04525 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 1.5e-174 617.1 437 69.6
Cre14.g623300 Chlamydomonas reinhardtii HOM05D005848 ORTHO05D007532 6.5e-167 591.7 499 60.3
MCO11G535 Micromonas commoda HOM05D005848 ORTHO05D007532 2.0e-160 570.1 621 49.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.5e-158 563.9 503 55.9
CBR_g42175 Chara braunii HOM05D005848 ORTHO05D007532 1.6e-149 533.9 319 76.2
Cfa025522 Carpinus fangiana HOM05D005848 ORTHO05D007532 5.1e-127 459.1 506 49.4
Cc10_g02890 Coffea canephora HOM05D005848 ORTHO05D007532 4.7e-125 452.6 258 79.8
Medtr1g022225 Medicago truncatula HOM05D005848 ORTHO05D007532 7.1e-121 438.7 248 81.0
QL02p008579 Quercus lobata HOM05D005848 ORTHO05D007532 4.4e-115 419.5 233 82.0
Actinidia15328 Actinidia chinensis HOM05D005848 ORTHO05D007532 3.5e-112 409.8 593 41.7
MSTRG.1277 Avicennia marina HOM05D005848 ORTHO05D007532 8.4e-106 388.7 294 68.7
Medtr1g022235 Medicago truncatula HOM05D005848 ORTHO05D007532 7.9e-80 302.4 340 52.1
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.4e-76 290.8 165 79.4
Cc10_g02880 Coffea canephora HOM05D005848 ORTHO05D007532 5.0e-74 283.1 227 65.6
Os10g0365900 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 1.5e-41 175.3 104 84.6
Gohir.D05G197166 Gossypium hirsutum HOM05D005848 ORTHO05D007532 2.5e-25 121.3 81 69.1
Hma1.2p1_1139F.1_g260870 Hydrangea macrophylla HOM05D005848 ORTHO05D007532 9.8e-22 109.4 68 75.0
Lj6g0011150 Lotus japonicus HOM05D000370 ORTHO05D001366 5.2e-15 87.0 69 63.8
Lj1g0001767 Lotus japonicus HOM05D005848 ORTHO05D038829 1.5e-14 85.5 44 84.1
Nn7g38354 Nelumbo nucifera HOM05D005848 ORTHO05D007532 1.5e-14 85.5 59 64.4
arahy.Tifrunner.gnm1.ann1.B18DRP Arachis hypogaea HOM05D005848 ORTHO05D007532 3.4e-14 84.3 213 31.9
arahy.Tifrunner.gnm1.ann1.T0WXUF Arachis hypogaea HOM05D005848 ORTHO05D038829 5.8e-14 83.6 73 57.5
Gohir.A05G194001 Gossypium hirsutum HOM05D005848 ORTHO05D218087 4.7e-08 63.9 40 65.0
Gohir.D05G197232 Gossypium hirsutum HOM05D005848 ORTHO05D047491 4.7e-08 63.9 40 65.0
Gorai.009G202100 Gossypium raimondii HOM05D005848 ORTHO05D047491 4.7e-08 63.9 40 65.0


User provided reference genes

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