Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 3.3e-121 438.7 284 100.0
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 2.1e-70 270.0 163 81.0
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 2.3e-69 266.5 214 68.7
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 3.9e-53 212.6 161 64.6
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 5.1e-53 212.2 152 69.1
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 1.1e-52 211.1 153 66.7
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 5.6e-52 208.8 184 66.3
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.6e-51 207.2 184 65.8
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 1.6e-51 207.2 184 65.8
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 2.1e-51 206.8 141 67.4
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 4.8e-51 205.7 164 61.0
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.8e-51 205.7 150 64.0
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 4.8e-51 205.7 150 64.0
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 1.1e-50 204.5 141 66.7
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 1.4e-50 204.1 164 62.8
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.4e-50 204.1 164 60.4
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 1.8e-50 203.8 159 61.6
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 1.8e-50 203.8 164 60.4
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 1.8e-50 203.8 161 63.4
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 2.4e-50 203.4 162 61.7
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 3.1e-50 203.0 152 61.2
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 4.0e-50 202.6 162 61.1
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 5.3e-50 202.2 214 57.0
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 6.9e-50 201.8 139 65.5
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 9.0e-50 201.4 150 62.0
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 1.5e-49 200.7 162 61.1
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 1.5e-49 200.7 155 62.6
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 1.5e-49 200.7 166 62.0
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 2.0e-49 200.3 153 62.1
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 2.0e-49 200.3 149 63.8
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 2.6e-49 199.9 150 61.3
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 4.5e-49 199.1 158 60.1
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 5.8e-49 198.7 144 66.0
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 5.8e-49 198.7 160 60.0
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 5.8e-49 198.7 144 65.3
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 5.8e-49 198.7 155 61.9
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 9.9e-49 198.0 144 65.3
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 1.3e-48 197.6 150 61.3
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 1.3e-48 197.6 144 64.6
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 1.7e-48 197.2 157 59.9
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 1.7e-48 197.2 144 63.9
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 2.2e-48 196.8 159 59.7
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 2.2e-48 196.8 144 64.6
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 2.9e-48 196.4 157 59.9
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 3.8e-48 196.1 158 58.9
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 4.9e-48 195.7 149 61.1
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 6.4e-48 195.3 160 58.8
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 6.4e-48 195.3 147 61.2
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 6.4e-48 195.3 147 61.2
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 6.4e-48 195.3 160 58.8
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 6.4e-48 195.3 168 57.1
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 6.4e-48 195.3 168 57.1
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 8.4e-48 194.9 144 62.5
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 8.4e-48 194.9 160 58.8
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 8.4e-48 194.9 160 58.8
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 8.4e-48 194.9 166 58.4
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 8.4e-48 194.9 155 59.4
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 8.4e-48 194.9 153 58.2
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 1.1e-47 194.5 144 63.9
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 1.9e-47 193.7 163 58.9
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 1.9e-47 193.7 144 62.5
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 1.9e-47 193.7 157 58.0
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 1.9e-47 193.7 161 59.0
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 3.2e-47 193.0 163 59.5
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 4.2e-47 192.6 158 57.6
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 5.5e-47 192.2 157 59.2
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 5.5e-47 192.2 148 60.1
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 5.5e-47 192.2 153 58.8
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 9.3e-47 191.4 161 58.4
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 1.2e-46 191.0 144 63.9
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 1.2e-46 191.0 150 58.0
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 1.6e-46 190.7 164 58.5
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 1.6e-46 190.7 144 62.5
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 2.7e-46 189.9 141 61.7
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 2.7e-46 189.9 159 59.1
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 3.5e-46 189.5 142 61.3
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 3.5e-46 189.5 153 59.5
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 4.6e-46 189.1 147 59.2
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 6.0e-46 188.7 139 61.2
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.0e-45 188.0 147 61.2
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 1.0e-45 188.0 154 59.7
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 1.0e-45 188.0 143 59.4
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.8e-45 187.2 148 59.5
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 3.0e-45 186.4 162 58.0
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 5.1e-45 185.7 153 58.2
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 1.9e-44 183.7 146 61.0
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 1.9e-44 183.7 144 61.1
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 2.5e-44 183.3 144 59.7
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 2.5e-44 183.3 144 59.7
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 4.3e-44 182.6 139 60.4
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 7.4e-44 181.8 168 53.0
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 1.3e-43 181.0 155 58.7
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 1.6e-43 180.6 151 59.6
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 2.1e-43 180.3 160 56.9
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 3.7e-43 179.5 160 57.5
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 6.2e-43 178.7 146 56.2
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 1.1e-42 177.9 163 55.8
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 2.4e-42 176.8 153 58.8
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 6.7e-37 158.7 134 59.7
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 1.6e-35 154.1 123 58.5
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 4.8e-35 152.5 127 60.6
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 4.5e-33 146.0 111 59.5
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 6.5e-32 142.1 102 63.7
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 4.6e-30 136.0 161 48.4
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 6.7e-29 132.1 153 47.1
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 2.2e-27 127.1 135 46.7
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 2.2e-27 127.1 110 56.4
AUR62014934 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.5e-25 120.9 102 75.5
Gohir.A10G171950 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.0e-21 108.2 107 49.5
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 1.4e-21 107.8 227 38.3
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 3.8e-16 89.7 198 40.4
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 1.8e-13 80.9 140 34.3
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 1.3e-08 64.7 59 55.9
Cpa.g.sc9.61 Carica papaya HOM05D006900 ORTHO05D008651 1.7e-08 64.3 64 46.9
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 5.0e-08 62.8 33 81.8
SGA_v2.0_scaffold157G37400 Striga asiatica HOM05D006900 ORTHO05D008651 1.6e-06 57.8 119 31.1


User provided reference genes

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