Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0262900 Oryza sativa ssp. japonica HOM05D003132 ORTHO05D003736 7.3e-46 186.8 90 100.0
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 7.0e-33 143.7 81 84.0
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 1.2e-32 142.9 81 82.7
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 2.7e-32 141.7 81 84.0
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 4.6e-32 141.0 81 82.7
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 6.0e-32 140.6 81 82.7
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 6.0e-32 140.6 81 82.7
Nn1g08540 Nelumbo nucifera HOM05D003132 ORTHO05D003736 7.8e-32 140.2 81 82.7
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 1.0e-31 139.8 81 81.5
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 1.0e-31 139.8 81 81.5
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 1.7e-31 139.0 81 82.7
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 2.3e-31 138.7 81 81.5
Cc00_g24650 Coffea canephora HOM05D003132 ORTHO05D003736 6.6e-31 137.1 81 82.7
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 8.6e-31 136.7 81 80.2
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 1.9e-30 135.6 81 77.8
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 2.5e-30 135.2 81 80.2
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 2.5e-30 135.2 81 80.2
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 2.5e-30 135.2 81 80.2
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 5.6e-30 134.0 81 77.8
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 1.2e-29 132.9 81 76.5
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 1.2e-29 132.9 81 79.0
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 1.2e-29 132.9 81 79.0
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 1.2e-29 132.9 81 76.5
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 2.8e-29 131.7 81 77.8
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 2.8e-29 131.7 81 77.8
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 3.6e-29 131.3 81 77.8
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 4.7e-29 131.0 81 77.8
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 1.1e-28 129.8 81 76.5
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 1.1e-28 129.8 81 76.5
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 1.4e-28 129.4 81 75.3
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.3e-28 128.6 81 72.8
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 4.0e-28 127.9 82 73.2
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 2.0e-27 125.6 81 75.3
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 5.8e-27 124.0 81 71.6
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 5.8e-27 124.0 81 75.3
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 1.3e-26 122.9 72 83.3
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 1.7e-26 122.5 72 83.3
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 2.9e-26 121.7 72 81.9
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 2.9e-26 121.7 107 60.7
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 4.9e-26 120.9 81 69.1
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 4.9e-26 120.9 81 69.1
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 1.4e-25 119.4 72 79.2
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.9e-25 119.0 72 80.6
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 1.9e-25 119.0 71 81.7
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 1.9e-25 119.0 72 79.2
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 1.9e-25 119.0 83 71.1
SEGI_33020 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 2.4e-25 118.6 81 67.9
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 3.2e-25 118.2 81 70.4
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 3.2e-25 118.2 72 80.6
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 4.1e-25 117.9 72 77.8
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 4.1e-25 117.9 81 66.7
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 5.4e-25 117.5 82 73.2
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 7.1e-25 117.1 72 77.8
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 7.1e-25 117.1 72 77.8
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 9.2e-25 116.7 81 66.7
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 9.2e-25 116.7 81 69.1
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 1.6e-24 115.9 72 79.2
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 1.6e-24 115.9 72 79.2
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 2.1e-24 115.5 72 79.2
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 2.7e-24 115.2 72 79.2
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 2.7e-24 115.2 72 75.0
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 2.7e-24 115.2 72 77.8
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 2.7e-24 115.2 77 74.0
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 4.6e-24 114.4 72 77.8
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 4.6e-24 114.4 72 73.6
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 6.0e-24 114.0 72 76.4
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 7.8e-24 113.6 77 70.1
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 1.0e-23 113.2 72 72.2
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 1.0e-23 113.2 72 76.4
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 1.0e-23 113.2 72 73.6
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 1.7e-23 112.5 72 75.0
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.3e-23 112.1 77 64.9
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 2.3e-23 112.1 72 76.4
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 2.3e-23 112.1 72 75.0
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 3.0e-23 111.7 69 76.8
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 3.9e-23 111.3 72 73.6
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 3.9e-23 111.3 68 77.9
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 3.9e-23 111.3 68 77.9
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 5.1e-23 110.9 72 73.6
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 5.1e-23 110.9 72 76.4
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 1.1e-22 109.8 72 73.6
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 1.5e-22 109.4 69 75.4
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 1.5e-22 109.4 72 75.0
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 1.5e-22 109.4 72 75.0
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 2.5e-22 108.6 68 75.0
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 3.3e-22 108.2 87 64.4
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 3.3e-22 108.2 72 72.2
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 7.3e-22 107.1 72 69.4
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 7.3e-22 107.1 72 72.2
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 9.5e-22 106.7 68 73.5
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 9.5e-22 106.7 68 73.5
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 1.6e-21 105.9 69 72.5
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.1e-21 105.5 69 75.4
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.1e-21 105.5 69 75.4
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 2.8e-21 105.1 69 75.4
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.8e-21 105.1 69 75.4
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 3.6e-21 104.8 69 71.0
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 3.6e-21 104.8 69 71.0
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 3.6e-21 104.8 69 71.0
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 3.6e-21 104.8 69 71.0
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 8.1e-21 103.6 69 69.6
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 8.1e-21 103.6 75 61.3
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 8.1e-21 103.6 81 61.7
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.1e-20 103.2 69 72.5
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 1.4e-20 102.8 69 69.6
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 3.1e-20 101.7 72 69.4
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 3.1e-20 101.7 60 83.3
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 1.2e-19 99.8 72 72.2
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 1.2e-19 99.8 81 58.0
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 1.5e-19 99.4 85 57.6
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 1.5e-19 99.4 60 80.0
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 7.6e-19 97.1 80 58.8
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 9.9e-19 96.7 81 58.0
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 3.8e-18 94.7 102 52.9
AagrBONN_evm.TU.Sc2ySwM_368.655 Anthoceros agrestis HOM05D003132 ORTHO05D003736 5.4e-17 90.9 70 57.1
PRCOL_00006551 Prasinoderma coloniale HOM05D003132 ORTHO05D003736 3.5e-16 88.2 91 49.5
GSVIVG01037118001 Vitis vinifera HOM05D003132 ORTHO05D003736 4.6e-16 87.8 76 51.3
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 5.1e-15 84.3 76 50.0
vmacro00916 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 5.1e-15 84.3 80 48.8
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 1.1e-14 83.2 69 58.0
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 1.1e-14 83.2 76 48.7
Aqoxy4G02982 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 1.5e-14 82.8 70 61.4
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 1.9e-14 82.4 76 50.0
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 2.5e-14 82.0 71 50.7
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 7.3e-14 80.5 71 52.1
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 7.3e-14 80.5 80 46.2
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 7.3e-14 80.5 77 46.8
ATR1089G130 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.2e-13 79.7 75 46.7
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 1.2e-13 79.7 69 56.5
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 1.2e-13 79.7 76 47.4
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 1.6e-13 79.3 79 46.8
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.6e-13 79.3 79 46.8
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 1.6e-13 79.3 76 47.4
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 2.8e-13 78.6 70 50.0
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 3.6e-13 78.2 87 43.7
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 3.6e-13 78.2 76 47.4
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 3.6e-13 78.2 71 49.3
Zm00001eb064020 Zea mays HOM05D003132 ORTHO05D003736 4.7e-13 77.8 69 49.3
COL.COLO4_25069 Corchorus olitorius HOM05D003132 ORTHO05D003736 6.2e-13 77.4 76 46.1
Atru.chr13.2600 Acer truncatum HOM05D003132 ORTHO05D003736 8.1e-13 77.0 76 47.4
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 1.4e-12 76.3 68 54.4
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.4e-12 76.3 69 49.3
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 1.4e-12 76.3 77 45.5
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 1.4e-12 76.3 71 49.3
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 1.8e-12 75.9 58 63.8
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 1.8e-12 75.9 74 43.2
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 1.8e-12 75.9 70 48.6
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 2.4e-12 75.5 83 44.6
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 2.4e-12 75.5 83 44.6
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 2.4e-12 75.5 76 44.7
Thecc.08G166600 Theobroma cacao HOM05D003132 ORTHO05D003736 2.4e-12 75.5 74 45.9
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 3.1e-12 75.1 66 51.5
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 3.1e-12 75.1 66 51.5
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 3.1e-12 75.1 68 48.5
Cre12.g547450 Chlamydomonas reinhardtii HOM05D003132 ORTHO05D003736 9.0e-12 73.6 80 45.0
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 9.0e-12 73.6 80 42.5
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 9.0e-12 73.6 69 44.9
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 9.0e-12 73.6 71 46.5
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 5.8e-11 70.9 71 45.1
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 5.8e-11 70.9 76 42.1
TWI12G0091 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 1.7e-10 69.3 78 42.3
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 6.4e-10 67.4 63 47.6
Os03g0842700 Oryza sativa ssp. japonica HOM05D003132 ORTHO05D003736 3.5e-08 61.6 77 39.0
FvH4_3g37600 Fragaria vesca HOM05D003132 ORTHO05D003736 3.0e-07 58.5 63 41.3
BraA05t21819Z Brassica rapa HOM05D003132 ORTHO05D003736 1.5e-06 56.2 39 64.1
SHI23777 Sapria himalayana HOM05D003132 ORTHO05D003736 1.5e-06 56.2 50 56.0
CDE04G2334 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 2.5e-06 55.5 52 46.2
Potri.013G092250 Populus trichocarpa HOM05D003132 ORTHO05D003736 4.3e-06 54.7 57 45.6
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 9.6e-06 53.5 47 51.1


User provided reference genes

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