Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0138100 Oryza sativa ssp. japonica HOM05D006602 ORTHO05D007927 0.0e+00 1123.6 644 100.0
Zm00001eb402770 Zea mays HOM05D006602 ORTHO05D007927 1.2e-129 468.0 598 55.7
Nn2g12538 Nelumbo nucifera HOM05D006602 ORTHO05D007927 2.1e-54 218.0 602 34.7
Haze_11431 Corylus avellana HOM05D006602 ORTHO05D003510 6.1e-54 216.5 587 36.3
HPP92_005119 Vanilla planifolia HOM05D006602 ORTHO05D007927 8.0e-54 216.1 621 35.3
Dinv27089 Davidia involucrata HOM05D006602 ORTHO05D007927 8.8e-53 212.6 615 33.8
MBI10_g19236_MAGBIO Magnolia biondii HOM05D006602 ORTHO05D007927 1.2e-52 212.2 567 33.9
RcHm_v2.0_Chr4g0394621 Rosa chinensis HOM05D006602 ORTHO05D007927 4.4e-52 210.3 372 44.9
ATR0736G103 Amborella trichopoda HOM05D006602 ORTHO05D007927 1.3e-51 208.8 325 44.6
Prupe.1G045200 Prunus persica HOM05D006602 ORTHO05D007927 8.3e-51 206.1 432 41.0
FvH4_4g04160 Fragaria vesca HOM05D006602 ORTHO05D007927 4.5e-49 200.3 438 40.0
TAR636G1896 Trochodendron aralioides HOM05D006602 ORTHO05D007927 1.1e-47 195.7 622 32.0
Cpa.g.sc44.23 Carica papaya HOM05D006602 ORTHO05D007927 7.2e-47 193.0 331 44.1
QL06p020003 Quercus lobata HOM05D006602 ORTHO05D007927 7.2e-47 193.0 624 33.3
Sp4g15780 Schrenkiella parvula HOM05D006602 ORTHO05D007927 9.5e-47 192.6 361 39.6
Manes.03G161700 Manihot esculenta HOM05D006602 ORTHO05D007927 1.2e-46 192.2 354 43.5
FAN17G1576 Fragaria x ananassa HOM05D006602 ORTHO05D007927 2.1e-46 191.4 577 35.0
MD13G1218500 Malus domestica HOM05D006602 ORTHO05D007927 3.6e-46 190.7 462 38.3
FAN22G1758 Fragaria x ananassa HOM05D006602 ORTHO05D007927 6.1e-46 189.9 564 34.9
Eucgr.H02994 Eucalyptus grandis HOM05D006602 ORTHO05D007927 1.8e-45 188.3 606 33.0
Lj6A624G54 Lonicera japonica HOM05D006602 ORTHO05D007927 1.8e-45 188.3 436 38.3
Aqoxy5G00174 Aquilegia oxysepala HOM05D006602 ORTHO05D007927 5.2e-45 186.8 339 40.1
Cc03_g05910 Coffea canephora HOM05D006602 ORTHO05D007927 2.6e-44 184.5 238 48.7
DCAR_002305 Daucus carota HOM05D006602 ORTHO05D007927 3.4e-44 184.1 337 40.9
Thecc.04G260100 Theobroma cacao HOM05D006602 ORTHO05D007927 7.5e-44 183.0 480 36.2
MSTRG.9876 Avicennia marina HOM05D006602 ORTHO05D007927 9.8e-44 182.6 526 34.6
VMungo0720G1075 Vigna mungo HOM05D006602 ORTHO05D007927 9.8e-44 182.6 623 32.7
EL10Ac3g04970 Beta vulgaris HOM05D006602 ORTHO05D007927 1.3e-43 182.2 298 46.0
CSS0038498 Camellia sinensis var. sinensis HOM05D006602 ORTHO05D007927 2.9e-43 181.0 555 34.1
Phvul.007G275200 Phaseolus vulgaris HOM05D006602 ORTHO05D007927 1.1e-42 179.1 570 33.7
Aa31LG5G3850 Aethionema arabicum HOM05D006602 ORTHO05D007927 1.8e-42 178.3 446 34.5
Ciclev10004248m.g Citrus clementina HOM05D006602 ORTHO05D007927 2.4e-42 177.9 399 37.3
AL4G29110 Arabidopsis lyrata HOM05D006602 ORTHO05D007927 3.2e-42 177.6 447 35.8
Thhalv10016212m.g Eutrema salsugineum HOM05D006602 ORTHO05D007927 4.1e-42 177.2 434 36.4
Potri.010G068400 Populus trichocarpa HOM05D006602 ORTHO05D007927 9.2e-42 176.0 596 33.2
Cfa014754 Carpinus fangiana HOM05D006602 ORTHO05D007927 1.2e-41 175.6 582 32.8
Sc13g0005920 Simmondsia chinensis HOM05D006602 ORTHO05D007927 1.6e-41 175.3 473 36.6
CiPaw.01G180800 Carya illinoinensis HOM05D006602 ORTHO05D007927 2.0e-41 174.9 593 35.2
GSVIVG01027871001 Vitis vinifera HOM05D006602 ORTHO05D007927 2.0e-41 174.9 400 37.2
Carub.0004s1507 Capsella rubella HOM05D006602 ORTHO05D007927 2.7e-41 174.5 285 43.2
Sopen09g033330 Solanum pennellii HOM05D006602 ORTHO05D007927 2.7e-41 174.5 294 41.8
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 7.8e-41 172.9 381 36.2
Solyc09g090420.4 Solanum lycopersicum HOM05D006602 ORTHO05D007927 7.8e-41 172.9 294 41.8
Atru.chr4.1980 Acer truncatum HOM05D006602 ORTHO05D007927 1.3e-40 172.2 428 36.0
AUR62002172 Chenopodium quinoa HOM05D006602 ORTHO05D007927 1.3e-40 172.2 356 41.9
Ah.04g155430 Amaranthus hybridus HOM05D006602 ORTHO05D007927 1.7e-40 171.8 440 37.5
TWI09G0121 Tripterygium wilfordii HOM05D006602 ORTHO05D007927 1.7e-40 171.8 565 32.6
TWI09G1114 Tripterygium wilfordii HOM05D006602 ORTHO05D007927 1.7e-40 171.8 565 32.6
AUR62015537 Chenopodium quinoa HOM05D006602 ORTHO05D007927 2.9e-40 171.0 355 41.7
MELO3C023018.2 Cucumis melo HOM05D006602 ORTHO05D007927 1.5e-39 168.7 322 40.7
Lalb_Chr01g0021011 Lupinus albus HOM05D006602 ORTHO05D007927 1.5e-39 168.7 357 38.4
vmacro15464 Vaccinium macrocarpon HOM05D006602 ORTHO05D007927 1.5e-39 168.7 634 36.8
Gohir.A10G109300 Gossypium hirsutum HOM05D006602 ORTHO05D007927 2.5e-39 167.9 569 31.6
ECA248G0430 Erigeron canadensis HOM05D006602 ORTHO05D007927 5.6e-39 166.8 389 36.5
CsaV3_2G012590 Cucumis sativus L. HOM05D006602 ORTHO05D007927 7.3e-39 166.4 314 40.8
Medtr1g041735 Medicago truncatula HOM05D006602 ORTHO05D007927 7.3e-39 166.4 357 38.9
Sabra08G0129700 Salix brachista HOM05D006602 ORTHO05D007927 1.2e-38 165.6 616 30.8
Lj6g0020892 Lotus japonicus HOM05D006602 ORTHO05D007927 1.6e-38 165.2 596 30.4
FAN12G1920 Fragaria x ananassa HOM05D006602 ORTHO05D007927 2.8e-38 164.5 577 32.9
TPR.G25155 Trifolium pratense HOM05D006602 ORTHO05D007927 3.6e-38 164.1 347 38.6
Oeu002939.1 Olea europaea HOM05D006602 ORTHO05D007927 1.0e-37 162.5 297 40.7
CDE02G3785 Ceratophyllum demersum HOM05D006602 ORTHO05D007927 2.3e-37 161.4 439 35.3
PSO423G0061 Papaver somniferum HOM05D006602 ORTHO05D007927 2.3e-37 161.4 372 37.4
Hund11918 Selenicereus undatus HOM05D006602 ORTHO05D007927 3.1e-37 161.0 595 32.1
Peaxi162Scf00602g00056 Petunia axillaris HOM05D006602 ORTHO05D007927 4.0e-37 160.6 665 29.5
CARHR127450 Cardamine hirsuta HOM05D006602 ORTHO05D007927 5.2e-37 160.2 309 39.2
Migut.G00495 Erythranthe guttata HOM05D006602 ORTHO05D007927 5.2e-37 160.2 587 33.0
Psat6g105120 Pisum sativum HOM05D006602 ORTHO05D007927 5.2e-37 160.2 499 33.9
AT2G33435 Arabidopsis thaliana HOM05D006602 ORTHO05D007927 6.8e-37 159.8 288 41.3
Glyma.10G005000 Glycine max HOM05D006602 ORTHO05D007927 1.5e-36 158.7 454 35.2
BolC3t14573H Brassica oleracea HOM05D006602 ORTHO05D007927 5.8e-36 156.8 379 34.6
CANSAT78G1730 Cannabis sativa HOM05D006602 ORTHO05D007927 7.5e-36 156.4 400 35.8
Duzib151G0058 Durio zibethinus HOM05D006602 ORTHO05D007927 1.3e-35 155.6 603 31.3
BraA03t11135Z Brassica rapa HOM05D006602 ORTHO05D007927 8.3e-35 152.9 320 38.4
Oeu002938.1 Olea europaea HOM05D006602 ORTHO05D007927 8.3e-35 152.9 334 36.8
PGR004G1839 Punica granatum HOM05D006602 ORTHO05D007927 8.3e-35 152.9 313 38.3
Rhsim02G0042400 Rhododendron simsii HOM05D006602 ORTHO05D007927 8.3e-35 152.9 599 33.9
Gohir.D10G157900 Gossypium hirsutum HOM05D006602 ORTHO05D007927 4.1e-34 150.6 568 30.6
THA.LOC104801076 Tarenaya hassleriana HOM05D006602 ORTHO05D007927 5.4e-34 150.2 567 30.3
ClCG06G007140 Citrullus lanatus HOM05D006602 ORTHO05D007927 9.2e-34 149.4 603 29.2
Sabra10G0038600 Salix brachista HOM05D006602 ORTHO05D007927 1.2e-33 149.1 558 31.2
A03p18750 Brassica napus HOM05D006602 ORTHO05D007927 4.6e-33 147.1 366 35.8
unitig_32.g10852 Utricularia gibba HOM05D006602 ORTHO05D007927 6.0e-33 146.7 292 40.4
C03p21910 Brassica napus HOM05D006602 ORTHO05D007927 1.0e-32 146.0 392 34.4
Gorai.011G177400 Gossypium raimondii HOM05D006602 ORTHO05D007927 3.0e-32 144.4 577 30.7
TAR365G0143 Trochodendron aralioides HOM05D006602 ORTHO05D007927 1.1e-31 142.5 155 49.0
Nitab4.5_0006936g0050 Nicotiana tabacum HOM05D006602 ORTHO05D007927 1.9e-31 141.7 595 30.4
Lsat_1_v5_gn_1_75121 Lactuca sativa HOM05D006602 ORTHO05D007927 3.3e-31 141.0 410 35.6
SalBow3G2492 Salvia bowleyana HOM05D006602 ORTHO05D007927 7.3e-31 139.8 587 30.2
COL.COLO4_15932 Corchorus olitorius HOM05D006602 ORTHO05D007927 9.5e-31 139.4 588 30.4
HanXRQChr04g0115381 Helianthus annuus HOM05D006602 ORTHO05D007927 1.6e-30 138.7 564 30.0
Sed0025551 Sechium edule HOM05D006602 ORTHO05D007927 3.6e-30 137.5 575 29.7
Nitab4.5_0001425g0110 Nicotiana tabacum HOM05D006602 ORTHO05D007927 6.2e-30 136.7 602 30.1
SGA_v2.0_scaffold67G22733 Striga asiatica HOM05D006602 ORTHO05D007927 1.5e-28 132.1 585 29.6
SEGI_13358 Sequoiadendron giganteum HOM05D006602 ORTHO05D007927 2.6e-28 131.3 587 29.0
arahy.Tifrunner.gnm1.ann1.B5VTGG Arachis hypogaea HOM05D006602 ORTHO05D007927 5.4e-26 123.6 330 33.9
SHI00706 Sapria himalayana HOM05D006602 ORTHO05D007927 1.6e-25 122.1 368 34.0
Mapoly0007s0229 Marchantia polymorpha HOM05D006602 ORTHO05D007927 6.0e-25 120.2 151 43.7
PSO079G0005 Papaver somniferum HOM05D006602 ORTHO05D007927 7.8e-25 119.8 281 35.6
AagrBONN_evm.TU.Sc2ySwM_344.2542 Anthoceros agrestis HOM05D006602 ORTHO05D007927 1.7e-24 118.6 297 35.7
Hma1.2p1_0385F.1_g141200 Hydrangea macrophylla HOM05D006602 ORTHO05D007927 1.7e-24 118.6 96 57.3
Ca_12140_v3 Cicer arietinum L. HOM05D006602 ORTHO05D007927 6.2e-22 110.2 325 35.4
Ca_12142_v3 Cicer arietinum L. HOM05D006602 ORTHO05D007927 6.2e-22 110.2 325 35.4
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 9.2e-18 96.3 436 28.9
Actinidia27205 Actinidia chinensis HOM05D006602 ORTHO05D007927 7.8e-17 93.2 56 73.2
Pp3c14_4860 Physcomitrium patens HOM05D006602 ORTHO05D007927 1.2e-14 85.9 487 26.5
CBR_g39255 Chara braunii HOM05D001563 ORTHO05D007927 1.6e-14 85.5 134 40.3
MCO09G845 Micromonas commoda HOM05D001563 ORTHO05D001956 9.3e-10 69.7 111 33.3
Cre02.g093975 Chlamydomonas reinhardtii HOM05D001563 ORTHO05D007927 7.8e-09 66.6 104 36.5
PRCOL_00004510 Prasinoderma coloniale HOM05D001563 ORTHO05D001956 1.3e-08 65.9 109 32.1
MCO06G064 Micromonas commoda HOM05D001563 ORTHO05D007927 3.0e-08 64.7 105 37.1
ECA234G4354 Erigeron canadensis HOM05D001563 ORTHO05D001956 1.1e-07 62.8 101 31.7
Actinidia19171 Actinidia chinensis HOM05D001563 ORTHO05D001956 2.5e-07 61.6 92 32.6
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 4.3e-07 60.8 92 34.8
CDE04G0453 Ceratophyllum demersum HOM05D001563 ORTHO05D001956 5.6e-07 60.5 101 33.7
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 5.6e-07 60.5 92 33.7
Cre09.g391949 Chlamydomonas reinhardtii HOM05D001563 ORTHO05D001956 5.6e-07 60.5 101 32.7
Pp3c17_14650 Physcomitrium patens HOM05D001563 ORTHO05D001956 5.6e-07 60.5 93 33.3
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 5.6e-07 60.5 92 33.7
Pp3c10_9710 Physcomitrium patens HOM05D001563 ORTHO05D001956 7.3e-07 60.1 92 33.7
Pp3c6_9210 Physcomitrium patens HOM05D001563 ORTHO05D001956 7.3e-07 60.1 92 33.7
ATR0680G241 Amborella trichopoda HOM05D001563 ORTHO05D001956 9.6e-07 59.7 92 34.8
FvH4_3g04890 Fragaria vesca HOM05D001563 ORTHO05D001956 9.6e-07 59.7 92 34.8
FAN11G2001 Fragaria x ananassa HOM05D001563 ORTHO05D001956 9.6e-07 59.7 92 34.8
FAN16G1505 Fragaria x ananassa HOM05D001563 ORTHO05D001956 9.6e-07 59.7 92 34.8
FAN25G3584 Fragaria x ananassa HOM05D001563 ORTHO05D001956 9.6e-07 59.7 92 34.8
TAR624G0856 Trochodendron aralioides HOM05D001563 ORTHO05D001956 9.6e-07 59.7 93 33.3
Os11g0636900 Oryza sativa ssp. japonica HOM05D001563 ORTHO05D001956 1.3e-06 59.3 92 34.8
PSO782G3279 Papaver somniferum HOM05D001563 ORTHO05D001956 1.3e-06 59.3 92 32.6
Pp3c14_9430 Physcomitrium patens HOM05D001563 ORTHO05D001956 1.3e-06 59.3 92 32.6
Rhsim02G0127600 Rhododendron simsii HOM05D001563 ORTHO05D001956 1.3e-06 59.3 92 35.9
Sopen02g023340 Solanum pennellii HOM05D001563 ORTHO05D001956 1.3e-06 59.3 101 33.7
CANSAT35G1515 Cannabis sativa HOM05D001563 ORTHO05D001956 1.6e-06 58.9 92 32.6
Mapoly0038s0053 Marchantia polymorpha HOM05D001563 ORTHO05D001956 1.6e-06 58.9 92 32.6
Pp3c25_5610 Physcomitrium patens HOM05D001563 ORTHO05D001956 1.6e-06 58.9 92 32.6
Potri.004G040900 Populus trichocarpa HOM05D001563 ORTHO05D001956 1.6e-06 58.9 92 34.8
TAR626G1347 Trochodendron aralioides HOM05D001563 ORTHO05D001956 1.6e-06 58.9 92 33.7
Zm00001eb165060 Zea mays HOM05D001563 ORTHO05D001956 1.6e-06 58.9 92 34.8
AagrBONN_evm.TU.Sc2ySwM_117.2379 Anthoceros agrestis HOM05D001563 ORTHO05D001956 2.1e-06 58.5 109 30.3
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 2.1e-06 58.5 92 32.6
PSO541G4869 Papaver somniferum HOM05D001563 ORTHO05D001956 2.1e-06 58.5 92 35.9
PSO675G6878 Papaver somniferum HOM05D001563 ORTHO05D001956 2.1e-06 58.5 92 35.9
CSS0024271 Camellia sinensis var. sinensis HOM05D001563 ORTHO05D001956 2.8e-06 58.2 92 34.8
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 2.8e-06 58.2 92 31.5
FAN21G2391 Fragaria x ananassa HOM05D001563 ORTHO05D001956 2.8e-06 58.2 96 32.3
Hma1.2p1_0881F.1_g231990 Hydrangea macrophylla HOM05D001563 ORTHO05D001956 2.8e-06 58.2 92 34.8
Lsat_1_v5_gn_1_125801 Lactuca sativa HOM05D001563 ORTHO05D001956 2.8e-06 58.2 92 34.8
MBI18_g17010_MAGBIO Magnolia biondii HOM05D001563 ORTHO05D001956 2.8e-06 58.2 92 33.7
Potri.011G050400 Populus trichocarpa HOM05D001563 ORTHO05D001956 2.8e-06 58.2 92 34.8
Zm00001eb166260 Zea mays HOM05D001563 ORTHO05D001956 2.8e-06 58.2 116 32.8
DCAR_017245 Daucus carota HOM05D001563 ORTHO05D001956 3.6e-06 57.8 92 33.7
HanXRQChr11g0338681 Helianthus annuus HOM05D001563 ORTHO05D001956 3.6e-06 57.8 106 33.0
MD05G1315100 Malus domestica HOM05D001563 ORTHO05D001956 3.6e-06 57.8 96 31.2
MD10G1296400 Malus domestica HOM05D001563 ORTHO05D001956 3.6e-06 57.8 96 33.3
Prupe.4G044200 Prunus persica HOM05D001563 ORTHO05D001956 3.6e-06 57.8 96 31.2
RcHm_v2.0_Chr5g0008051 Rosa chinensis HOM05D001563 ORTHO05D001956 3.6e-06 57.8 96 31.2
Sopen12g003680 Solanum pennellii HOM05D001563 ORTHO05D001956 3.6e-06 57.8 92 33.7
PGSC0003DMG400000344 Solanum tuberosum HOM05D001563 ORTHO05D001956 3.6e-06 57.8 92 33.7
Actinidia39452 Actinidia chinensis HOM05D001563 ORTHO05D001956 4.8e-06 57.4 92 33.7
Ciclev10014912m.g Citrus clementina HOM05D001563 ORTHO05D001956 4.8e-06 57.4 96 32.3
Nitab4.5_0000540g0190 Nicotiana tabacum HOM05D001563 ORTHO05D001956 4.8e-06 57.4 92 33.7
Peaxi162Scf00498g00117 Petunia axillaris HOM05D001563 ORTHO05D001956 4.8e-06 57.4 92 33.7
Psat1g206200 Pisum sativum HOM05D001563 ORTHO05D001956 4.8e-06 57.4 92 32.6
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 4.8e-06 57.4 102 29.4
Zm00001eb115220 Zea mays HOM05D001563 ORTHO05D001956 4.8e-06 57.4 116 33.6
Atru.chr10.1931 Acer truncatum HOM05D001563 ORTHO05D001956 6.2e-06 57.0 92 33.7
Ah.01g008230 Amaranthus hybridus HOM05D001563 ORTHO05D001956 6.2e-06 57.0 111 31.5
PSO210G2990 Papaver somniferum HOM05D001563 ORTHO05D001956 6.2e-06 57.0 92 33.7
TPR.G34178 Trifolium pratense HOM05D001563 ORTHO05D001956 6.2e-06 57.0 92 33.7
MSTRG.27164 Avicennia marina HOM05D001563 ORTHO05D001956 8.1e-06 56.6 92 32.6
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 8.1e-06 56.6 92 30.4
Lalb_Chr01g0000001 Lupinus albus HOM05D001563 ORTHO05D001956 8.1e-06 56.6 92 32.6
Potri.007G028500 Populus trichocarpa HOM05D001563 ORTHO05D001956 8.1e-06 56.6 92 31.5
Sabra07G0024700 Salix brachista HOM05D001563 ORTHO05D001956 8.1e-06 56.6 92 31.5
Sed0006575 Sechium edule HOM05D001563 ORTHO05D001956 8.1e-06 56.6 92 32.6
SEGI_21623 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 8.1e-06 56.6 92 31.5
TAR627G0554 Trochodendron aralioides HOM05D001563 ORTHO05D001956 8.1e-06 56.6 110 32.7
unitig_37.g12507 Utricularia gibba HOM05D001563 ORTHO05D001956 8.1e-06 56.6 92 32.6


User provided reference genes

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