Gene: Solyc09g090420.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g090420.4
  • Transcript Identifier Solyc09g090420.4.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 66032904-66042485 : negative

Gene Family Information

  • ID HOM05D006602
  • #Genes/#Species 121/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g090420.4.1
  • uniprot A0A3Q7J393
  • gene_id Solyc09g090420

Descriptions

  • Description U2 snRNP auxiliary factor large subunit (AHRD V3.3 *-* A0A1I7S9N1_BURXY)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0008187
IBA
GOA Databasepoly-pyrimidine tract binding
GO:0030628
IBA
GOA Databasepre-mRNA 3'-splice site binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0089701
IBA
GOA DatabaseU2AF complex
GO:0016607
IBA
GOA Databasenuclear speck
GO:0000243
IBA
GOA Databasecommitment complex
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
35.1 not assigned.annotated