Gene: Pp3c25_5610

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c25_5610
  • Transcript Identifier Pp3c25_5610V3.1
  • Gene Type Coding gene
  • Location Chr25 : 3643932-3651071 : negative

Gene Family Information

  • ID HOM05D001563
  • #Genes/#Species 409/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c25_5610V3.1
  • pacid 32980360
  • alias Pp1s88_42V6
  • alias Phpat.025G020700
  • alias Phypa_30913
  • uniprot A0A2K1IDY1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT1G60900
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT4G36690
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT1G60900
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030628
IBA
GOA Databasepre-mRNA 3'-splice site binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G36690
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G60900
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008187
IBA
GOA Databasepoly-pyrimidine tract binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT4G36690
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G36690
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0000243
IBA
GOA Databasecommitment complex
GO:0016607
IBA
GOA Databasenuclear speck
GO:0089701
IBA
GOA DatabaseU2AF complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.2.1.2.11.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.large subunit U2AF2/U2AF65