Gene: Sopen02g023340

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g023340
  • Transcript Identifier Sopen02g023340.5
  • Gene Type Coding gene
  • Location Spenn-ch02 : 46731204-46741446 : positive

Gene Family Information

  • ID HOM05D001563
  • #Genes/#Species 409/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g023340.5

Descriptions

  • Description U2 snRNP auxilliary factor, large subunit, splicing factor | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: mRNA processing | LOCATED IN: nucleus | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , U2 snRNP auxilliary factor, large subunit, splicing factor | BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
InterPromRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor
Mapman id Description
16.2.1.2.11.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.large subunit U2AF2/U2AF65