Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os03g0102300 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D011598 3.6e-123 444.9 221 100.0
Zm00001eb000340 Zea mays HOM05D001670 ORTHO05D002980 5.3e-58 228.4 210 58.6
Zm00001eb404410 Zea mays HOM05D001670 ORTHO05D002980 2.7e-57 226.1 196 61.2
Os10g0556700 Oryza sativa ssp. japonica HOM05D001670 ORTHO05D002980 1.7e-51 206.8 188 58.5
MBI04_g09509_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 1.2e-38 164.1 177 50.3
TAR374G0935 Trochodendron aralioides HOM05D001670 ORTHO05D002980 1.2e-38 164.1 181 49.2
TAR629G1646 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.3e-37 159.8 191 45.0
GSVIVG01018721001 Vitis vinifera HOM05D001670 ORTHO05D002980 1.3e-35 154.1 207 41.1
TAR375G0686 Trochodendron aralioides HOM05D001670 ORTHO05D002980 2.2e-35 153.3 194 45.9
Nn6g33938 Nelumbo nucifera HOM05D001670 ORTHO05D002980 2.7e-33 146.4 198 42.9
Dinv44111 Davidia involucrata HOM05D001670 ORTHO05D002980 5.9e-33 145.2 184 41.8
HPP92_007431 Vanilla planifolia HOM05D001670 ORTHO05D002980 1.0e-32 144.4 181 47.0
MD02G1214300 Malus domestica HOM05D001670 ORTHO05D002980 5.0e-32 142.1 192 40.1
Dinv06565 Davidia involucrata HOM05D001670 ORTHO05D002980 6.6e-32 141.7 192 42.7
ClCG05G000260 Citrullus lanatus HOM05D001670 ORTHO05D002980 1.1e-31 141.0 197 38.1
VMungo0331G0876 Vigna mungo HOM05D001670 ORTHO05D002980 1.9e-31 140.2 196 42.3
Gorai.007G088100 Gossypium raimondii HOM05D001670 ORTHO05D002980 3.3e-31 139.4 198 39.9
Potri.014G058800 Populus trichocarpa HOM05D001670 ORTHO05D002980 3.3e-31 139.4 195 40.0
Potri.002G143000 Populus trichocarpa HOM05D001670 ORTHO05D002980 4.3e-31 139.0 195 40.5
CDE11G0683 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 5.6e-31 138.7 187 42.8
Prupe.2G135900 Prunus persica HOM05D001670 ORTHO05D002980 5.6e-31 138.7 199 41.7
MD07G1112500 Malus domestica HOM05D001670 ORTHO05D002980 7.3e-31 138.3 196 41.3
RcHm_v2.0_Chr1g0348711 Rosa chinensis HOM05D001670 ORTHO05D002980 7.3e-31 138.3 189 40.2
TWI59G0301 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 7.3e-31 138.3 184 39.7
Gohir.D11G082433 Gossypium hirsutum HOM05D001670 ORTHO05D002980 9.5e-31 137.9 198 39.4
Phvul.010G056800 Phaseolus vulgaris HOM05D001670 ORTHO05D002980 9.5e-31 137.9 196 41.3
Thecc.01G385600 Theobroma cacao HOM05D001670 ORTHO05D002980 9.5e-31 137.9 198 40.4
QL04p035871 Quercus lobata HOM05D001670 ORTHO05D002980 1.6e-30 137.1 197 41.1
FvH4_7g10770 Fragaria vesca HOM05D001670 ORTHO05D002980 2.1e-30 136.7 189 40.2
FAN06G0311 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.1e-30 136.7 189 40.2
FAN06G1683 Fragaria x ananassa HOM05D001670 ORTHO05D002980 2.1e-30 136.7 189 40.2
TWI14G1227 Tripterygium wilfordii HOM05D001670 ORTHO05D002980 2.1e-30 136.7 184 39.7
Psat4g209400 Pisum sativum HOM05D001670 ORTHO05D002980 2.8e-30 136.3 195 40.0
Sed0002470 Sechium edule HOM05D001670 ORTHO05D002980 2.8e-30 136.3 197 37.1
ATR0317G075 Amborella trichopoda HOM05D001670 ORTHO05D002980 3.6e-30 136.0 185 42.2
Cc02_g24610 Coffea canephora HOM05D001670 ORTHO05D002980 3.6e-30 136.0 192 40.6
Manes.05G050200 Manihot esculenta HOM05D001670 ORTHO05D002980 6.2e-30 135.2 199 40.2
Aqoxy6G02523 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 8.0e-30 134.8 191 40.3
CsaV3_3G007410 Cucumis sativus L. HOM05D001670 ORTHO05D002980 8.0e-30 134.8 199 38.2
FAN10G0390 Fragaria x ananassa HOM05D001670 ORTHO05D002980 8.0e-30 134.8 189 39.7
FAN10G2564 Fragaria x ananassa HOM05D001670 ORTHO05D002980 8.0e-30 134.8 189 39.7
Hund27384 Selenicereus undatus HOM05D001670 ORTHO05D002980 8.0e-30 134.8 195 42.1
FAN01G0667 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.0e-29 134.4 189 40.2
Medtr8g005820 Medicago truncatula HOM05D001670 ORTHO05D002980 1.0e-29 134.4 195 38.5
Manes.01G270100 Manihot esculenta HOM05D001670 ORTHO05D002980 1.4e-29 134.0 184 39.1
EL10Ac1g00822 Beta vulgaris HOM05D001670 ORTHO05D002980 1.8e-29 133.7 176 43.8
Duzib133G0195 Durio zibethinus HOM05D001670 ORTHO05D002980 1.8e-29 133.7 197 39.1
FAN03G2300 Fragaria x ananassa HOM05D001670 ORTHO05D002980 1.8e-29 133.7 189 39.7
Cpa.g.sc914.1 Carica papaya HOM05D001670 ORTHO05D002980 2.3e-29 133.3 194 40.2
Sabra02G0111500 Salix brachista HOM05D001670 ORTHO05D002980 2.3e-29 133.3 195 40.0
Glyma.03G118400 Glycine max HOM05D001670 ORTHO05D002980 3.1e-29 132.9 196 39.8
MSTRG.20721 Avicennia marina HOM05D001670 ORTHO05D002980 4.0e-29 132.5 185 40.5
CANSAT21G0618 Cannabis sativa HOM05D001670 ORTHO05D002980 4.0e-29 132.5 197 40.1
Atru.chr1.760 Acer truncatum HOM05D001670 ORTHO05D002980 5.2e-29 132.1 190 38.9
PGR042G0136 Punica granatum HOM05D001670 ORTHO05D002980 5.2e-29 132.1 183 39.3
Duzib268G0141 Durio zibethinus HOM05D001670 ORTHO05D002980 6.8e-29 131.7 198 38.9
MBI17_g44285_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 6.8e-29 131.7 158 44.3
Atru.chr5.219 Acer truncatum HOM05D001670 ORTHO05D002980 8.9e-29 131.3 196 40.3
Aqoxy7G00778 Aquilegia oxysepala HOM05D001670 ORTHO05D002980 8.9e-29 131.3 192 40.6
Glyma.07G108700 Glycine max HOM05D001670 ORTHO05D002980 8.9e-29 131.3 196 38.3
Gorai.008G107100 Gossypium raimondii HOM05D001670 ORTHO05D002980 8.9e-29 131.3 198 38.4
MBI16_g24355_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 8.9e-29 131.3 133 51.1
Rhsim03G0166300 Rhododendron simsii HOM05D001670 ORTHO05D002980 8.9e-29 131.3 208 38.0
TPR.G28734 Trifolium pratense HOM05D001670 ORTHO05D002980 8.9e-29 131.3 197 38.6
MBI18_g40791_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.0e-28 130.2 126 51.6
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 2.0e-28 130.2 185 38.9
Ciclev10018430m.g Citrus clementina HOM05D001670 ORTHO05D002980 3.4e-28 129.4 196 38.3
PSO017G3667 Papaver somniferum HOM05D001670 ORTHO05D002980 3.4e-28 129.4 187 41.2
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 4.4e-28 129.0 126 50.8
Peaxi162Scf00377g00038 Petunia axillaris HOM05D001670 ORTHO05D002980 7.5e-28 128.3 193 38.9
Hund17061 Selenicereus undatus HOM05D001670 ORTHO05D002980 1.3e-27 127.5 179 43.6
arahy.Tifrunner.gnm1.ann1.1V1Y36 Arachis hypogaea HOM05D001670 ORTHO05D002980 1.7e-27 127.1 197 38.6
Migut.B01578 Erythranthe guttata HOM05D001670 ORTHO05D002980 1.7e-27 127.1 184 39.1
SGA_v2.0_scaffold399G50813 Striga asiatica HOM05D001670 ORTHO05D002980 1.7e-27 127.1 187 39.6
arahy.Tifrunner.gnm1.ann1.5NE8AH Arachis hypogaea HOM05D001670 ORTHO05D002980 2.2e-27 126.7 197 38.6
Cfa011137 Carpinus fangiana HOM05D001670 ORTHO05D002980 2.9e-27 126.3 197 38.1
PSO170G5961 Papaver somniferum HOM05D001670 ORTHO05D002980 2.9e-27 126.3 187 40.6
Eucgr.E01609 Eucalyptus grandis HOM05D001670 ORTHO05D002980 3.7e-27 125.9 194 38.7
Rhsim01G0135600 Rhododendron simsii HOM05D001670 ORTHO05D002980 4.9e-27 125.6 184 39.7
HanXRQChr04g0123421 Helianthus annuus HOM05D001670 ORTHO05D002980 6.4e-27 125.2 199 38.7
Sc13g0006690 Simmondsia chinensis HOM05D001670 ORTHO05D002980 6.4e-27 125.2 184 39.1
DCAR_015867 Daucus carota HOM05D001670 ORTHO05D002980 8.3e-27 124.8 195 36.4
ECA236G0609 Erigeron canadensis HOM05D001670 ORTHO05D002980 1.1e-26 124.4 203 35.0
Ca_23116_v3 Cicer arietinum L. HOM05D001670 ORTHO05D002980 1.4e-26 124.0 195 37.4
Duzib068G1107 Durio zibethinus HOM05D001670 ORTHO05D002980 1.9e-26 123.6 203 36.5
Lj3g0005567 Lotus japonicus HOM05D001670 ORTHO05D002980 4.1e-26 122.5 192 38.0
THA.LOC104814077 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 7.0e-26 121.7 197 36.5
Aa31LG1G11410 Aethionema arabicum HOM05D001670 ORTHO05D002980 1.2e-25 120.9 184 35.3
Oeu064574.1 Olea europaea HOM05D001670 ORTHO05D002980 1.2e-25 120.9 167 36.5
Lsat_1_v5_gn_7_10221 Lactuca sativa HOM05D001670 ORTHO05D002980 1.6e-25 120.6 199 37.2
MBI14_g36712_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.0e-25 120.2 135 50.4
Oeu000038.3 Olea europaea HOM05D001670 ORTHO05D002980 2.0e-25 120.2 166 36.7
COL.COLO4_12469 Corchorus olitorius HOM05D001670 ORTHO05D002980 3.5e-25 119.4 174 40.2
SalBow5G2000 Salvia bowleyana HOM05D001670 ORTHO05D002980 4.6e-25 119.0 185 36.8
THA.LOC104801485 Tarenaya hassleriana HOM05D001670 ORTHO05D002980 3.0e-24 116.3 190 34.7
Lj9C563G7 Lonicera japonica HOM05D001670 ORTHO05D002980 3.9e-24 115.9 161 39.8
Haze_02723 Corylus avellana HOM05D001670 ORTHO05D002980 6.6e-24 115.2 166 38.6
Lalb_Chr07g0195691 Lupinus albus HOM05D001670 ORTHO05D002980 8.6e-24 114.8 195 37.9
CAN.G899.12 Capsicum annuum HOM05D001670 ORTHO05D002980 1.9e-23 113.6 195 35.9
unitig_0.g1315 Utricularia gibba HOM05D001670 ORTHO05D002980 2.5e-23 113.2 173 37.6
Lalb_Chr13g0290371 Lupinus albus HOM05D001670 ORTHO05D002980 9.5e-23 111.3 198 36.4
Nitab4.5_0000706g0120 Nicotiana tabacum HOM05D001670 ORTHO05D002980 9.5e-23 111.3 192 35.9
HanXRQChr06g0168951 Helianthus annuus HOM05D001670 ORTHO05D002980 1.2e-22 110.9 178 36.0
CSS0023490 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.1e-22 110.2 171 37.4
CSS0045110 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D002980 2.1e-22 110.2 171 37.4
vmacro21039 Vaccinium macrocarpon HOM05D001670 ORTHO05D002980 4.7e-22 109.0 166 37.3
Solyc01g090780.3 Solanum lycopersicum HOM05D001670 ORTHO05D002980 3.1e-21 106.3 187 34.8
MBI14_g46623_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 4.0e-21 105.9 114 46.5
Sopen01g036510 Solanum pennellii HOM05D001670 ORTHO05D002980 4.0e-21 105.9 187 34.8
Nitab4.5_0002304g0030 Nicotiana tabacum HOM05D001670 ORTHO05D002980 6.8e-21 105.1 161 37.3
BcaNung05012 Brassica carinata HOM05D001670 ORTHO05D002980 1.2e-20 104.4 188 35.6
A09p69240 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-20 104.4 188 35.6
C08p54060 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-20 104.4 188 35.6
BolC8t52916H Brassica oleracea HOM05D001670 ORTHO05D002980 1.2e-20 104.4 188 35.6
PSO421G0693 Papaver somniferum HOM05D001670 ORTHO05D002980 1.5e-20 104.0 201 34.3
BcaC07g42342 Brassica carinata HOM05D001670 ORTHO05D002980 4.4e-20 102.4 187 34.2
Thhalv10006521m.g Eutrema salsugineum HOM05D001670 ORTHO05D002980 5.8e-20 102.1 199 33.7
PSO104G0201 Papaver somniferum HOM05D001670 ORTHO05D002980 7.5e-20 101.7 207 34.8
DCAR_025093 Daucus carota HOM05D001670 ORTHO05D002980 1.7e-19 100.5 195 31.8
BraA09t42277Z Brassica rapa HOM05D001670 ORTHO05D002980 6.4e-19 98.6 188 33.5
Sp1g00220 Schrenkiella parvula HOM05D001670 ORTHO05D002980 6.4e-19 98.6 184 32.1
AL1G10200 Arabidopsis lyrata HOM05D001670 ORTHO05D002980 5.4e-18 95.5 186 32.3
BolC6t37249H Brassica oleracea HOM05D001670 ORTHO05D002980 5.4e-18 95.5 203 32.0
BcaB02g07859 Brassica carinata HOM05D001670 ORTHO05D002980 7.1e-18 95.1 186 31.2
MBI02_g32970_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 9.2e-18 94.7 93 51.6
BcaC08g44594 Brassica carinata HOM05D001670 ORTHO05D002980 1.2e-17 94.4 186 32.8
C06p20660 Brassica napus HOM05D001670 ORTHO05D002980 1.2e-17 94.4 186 32.8
Zm00001eb391310 Zea mays HOM05D001670 ORTHO05D011598 1.2e-17 94.4 136 44.9
BraA10t42293Z Brassica rapa HOM05D001670 ORTHO05D002980 3.5e-17 92.8 184 31.5
Carub.0001s0015 Capsella rubella HOM05D001670 ORTHO05D002980 3.5e-17 92.8 172 34.3
A07p21180 Brassica napus HOM05D001670 ORTHO05D002980 4.6e-17 92.4 184 32.1
A10p00140 Brassica napus HOM05D001670 ORTHO05D002980 4.6e-17 92.4 184 31.5
BraA07t29805Z Brassica rapa HOM05D001670 ORTHO05D002980 4.6e-17 92.4 184 32.1
GSVIVG01018178001 Vitis vinifera HOM05D001670 ORTHO05D002980 6.0e-17 92.0 131 37.4
Lj7C538G19 Lonicera japonica HOM05D001670 ORTHO05D002980 7.8e-17 91.7 121 43.0
AT1G02080 Arabidopsis thaliana HOM05D001670 ORTHO05D002980 1.7e-16 90.5 186 32.3
CARHR000250 Cardamine hirsuta HOM05D001670 ORTHO05D002980 2.3e-16 90.1 214 30.8
CARHR248060 Cardamine hirsuta HOM05D001670 ORTHO05D002980 3.9e-16 89.4 196 31.1
Pp3c21_18770 Physcomitrium patens HOM05D001670 ORTHO05D002980 3.9e-16 89.4 160 34.4
Actinidia12668 Actinidia chinensis HOM05D001670 ORTHO05D011598 1.1e-15 87.8 175 32.6
C05p00130 Brassica napus HOM05D001670 ORTHO05D002980 1.1e-15 87.8 185 30.8
Mapoly0037s0011 Marchantia polymorpha HOM05D001670 ORTHO05D002980 4.3e-15 85.9 191 34.0
BolC5t28803H Brassica oleracea HOM05D001670 ORTHO05D002980 5.6e-15 85.5 185 30.3
MELO3C005963.2 Cucumis melo HOM05D001670 ORTHO05D002980 3.6e-14 82.8 84 46.4
MBI15_g00867_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 3.6e-14 82.8 124 39.5
CDE09G0971 Ceratophyllum demersum HOM05D001670 ORTHO05D002980 4.7e-14 82.4 100 42.0
MBI03_g02276_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 6.2e-14 82.0 124 38.7
Pp3c5_6540 Physcomitrium patens HOM05D001670 ORTHO05D002980 6.2e-14 82.0 179 32.4
Lj1A427G6 Lonicera japonica HOM05D001670 ORTHO05D011598 1.4e-13 80.9 116 40.5
Oeu061519.1 Olea europaea HOM05D001670 ORTHO05D002980 6.8e-13 78.6 130 37.7
BcaB03g13629 Brassica carinata HOM05D001670 ORTHO05D002980 1.2e-12 77.8 198 28.8
CSS0045688 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 1.5e-12 77.4 89 43.8
MBI18_g33676_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.0e-12 77.0 112 42.0
CSS0019437 Camellia sinensis var. sinensis HOM05D001670 ORTHO05D011598 2.6e-12 76.6 103 40.8
MBI14_g28585_MAGBIO Magnolia biondii HOM05D011668 ORTHO05D011598 5.8e-12 75.5 98 42.9
MBI15_g31883_MAGBIO Magnolia biondii HOM05D011668 ORTHO05D011598 9.9e-12 74.7 93 45.2
MBI05_g15359_MAGBIO Magnolia biondii HOM05D003323 ORTHO05D011598 1.7e-08 63.9 56 57.1
Rhsim03G0135100 Rhododendron simsii HOM05D001670 ORTHO05D011598 3.0e-08 63.2 89 38.2
CiPaw.13G031300 Carya illinoinensis HOM05D001670 ORTHO05D002980 5.6e-07 58.9 66 40.9
MBI14_g39940_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 5.6e-07 58.9 67 44.8
SHI13580 Sapria himalayana HOM05D001670 ORTHO05D011598 7.3e-07 58.5 107 35.5


User provided reference genes

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