Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.0e-137 491.9 258 100.0
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.1e-97 360.5 257 76.7
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.7e-76 290.0 208 67.3
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.0e-76 289.3 208 69.2
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 3.9e-76 288.9 208 69.2
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 5.1e-76 288.5 186 76.3
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-75 287.3 208 68.8
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.1e-75 287.3 208 68.8
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 1.1e-75 287.3 186 76.3
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 4.3e-75 285.4 233 63.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 5.6e-75 285.0 188 73.9
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 7.3e-75 284.6 186 75.8
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 9.6e-75 284.3 204 69.6
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 1.6e-74 283.5 212 67.9
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 2.8e-74 282.7 234 63.7
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 3.6e-74 282.3 205 69.3
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 6.2e-74 281.6 186 74.2
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.1e-73 280.8 179 76.5
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-73 280.8 189 74.6
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-73 280.8 189 74.6
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.1e-73 280.8 215 67.9
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.4e-73 279.6 186 74.2
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.4e-73 279.6 183 74.3
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 3.1e-73 279.3 185 74.6
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 3.1e-73 279.3 183 75.4
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 4.0e-73 278.9 189 73.0
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 6.9e-73 278.1 241 62.2
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 6.9e-73 278.1 187 75.4
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 6.9e-73 278.1 189 72.5
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 6.9e-73 278.1 185 73.5
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 9.0e-73 277.7 186 73.1
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 9.0e-73 277.7 185 73.0
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 9.0e-73 277.7 189 71.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 9.0e-73 277.7 187 72.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 9.0e-73 277.7 187 73.3
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 9.0e-73 277.7 187 73.3
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.2e-72 277.3 231 62.3
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.5e-72 276.9 215 65.6
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.6e-72 276.2 182 73.1
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 3.4e-72 275.8 184 75.0
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.4e-72 275.4 186 73.7
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 4.4e-72 275.4 187 71.7
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 5.8e-72 275.0 187 74.3
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 5.8e-72 275.0 187 71.7
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 5.8e-72 275.0 181 74.0
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 7.6e-72 274.6 181 72.4
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 7.6e-72 274.6 183 72.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 9.9e-72 274.2 188 72.3
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 9.9e-72 274.2 182 73.1
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 1.3e-71 273.9 182 72.5
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.7e-71 273.5 179 74.9
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 2.2e-71 273.1 238 61.8
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.2e-71 273.1 185 74.6
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.2e-71 273.1 183 74.3
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 2.2e-71 273.1 246 59.3
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.9e-71 272.7 237 61.6
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.9e-71 272.7 185 74.1
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 3.8e-71 272.3 203 67.0
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 4.9e-71 271.9 184 74.5
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 4.9e-71 271.9 234 65.0
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.9e-71 271.9 185 73.5
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.9e-71 271.9 185 74.1
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 4.9e-71 271.9 185 74.1
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 6.4e-71 271.6 183 72.7
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 6.4e-71 271.6 186 72.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.1e-70 270.8 185 74.1
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.1e-70 270.8 210 65.2
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 1.4e-70 270.4 184 73.9
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 2.4e-70 269.6 254 59.8
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 5.4e-70 268.5 185 73.5
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 5.4e-70 268.5 181 72.4
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 7.1e-70 268.1 185 72.4
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.1e-70 268.1 183 73.2
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 1.6e-69 266.9 185 73.0
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 2.1e-69 266.5 181 72.9
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-69 266.5 210 64.8
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-69 266.5 181 72.9
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.7e-69 266.2 209 66.0
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 2.7e-69 266.2 186 69.4
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.5e-69 265.8 183 72.1
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 4.6e-69 265.4 182 72.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 6.0e-69 265.0 186 72.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 6.0e-69 265.0 180 72.8
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 7.9e-69 264.6 184 72.3
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 7.9e-69 264.6 184 72.3
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 7.9e-69 264.6 188 70.2
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.0e-68 264.2 253 59.7
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.7e-68 263.5 180 72.2
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 3.0e-68 262.7 256 58.2
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 3.9e-68 262.3 192 69.3
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.6e-68 261.5 190 68.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 8.7e-68 261.2 181 71.3
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 8.7e-68 261.2 252 58.3
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 8.7e-68 261.2 262 58.4
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.1e-67 260.8 262 59.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-67 260.0 188 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.3e-67 259.2 262 56.5
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.3e-67 258.8 186 70.4
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 5.6e-67 258.5 200 65.5
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 7.3e-67 258.1 257 56.0
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 3.6e-66 255.8 185 70.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.1e-66 254.6 263 56.3
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 8.1e-66 254.6 271 55.4
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.8e-65 253.4 169 74.0
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.1e-65 252.7 214 62.1
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.5e-64 250.4 210 62.9
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.0e-64 250.0 193 66.3
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 4.5e-64 248.8 193 66.8
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 7.6e-64 248.1 189 67.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.3e-63 247.3 258 53.5
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.2e-63 246.5 190 66.8
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.1e-62 244.2 175 71.4
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.9e-62 243.4 168 71.4
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 5.5e-62 241.9 187 65.2
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 7.9e-61 238.0 166 69.9
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.0e-60 237.7 171 69.0
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 2.3e-60 236.5 178 65.7
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.3e-60 236.5 226 59.7
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 6.7e-60 235.0 221 59.3
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 4.3e-59 232.3 183 65.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 4.3e-59 232.3 183 65.0
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 7.4e-59 231.5 214 57.5
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.1e-58 229.9 188 63.3
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 3.7e-58 229.2 213 56.3
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 4.8e-58 228.8 183 65.6
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 4.8e-58 228.8 190 63.7
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 6.2e-58 228.4 183 65.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 6.2e-58 228.4 183 65.0
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 4.0e-57 225.7 235 55.3
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 9.0e-57 224.6 181 63.5
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.2e-56 224.2 181 63.0
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.5e-56 223.8 181 63.5
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 4.9e-55 218.8 264 51.9
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 8.4e-55 218.0 181 61.3
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.3e-52 209.9 164 64.6
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.3e-51 206.1 152 67.8
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.1e-50 203.4 186 59.7
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.8e-49 200.3 142 69.0
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 5.1e-44 182.2 200 54.0
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.1e-43 181.0 134 64.2
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.3e-43 179.1 142 64.1
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-41 174.5 124 72.6
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.4e-41 174.1 111 76.6
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 5.9e-40 168.7 189 51.3
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.3e-39 167.5 127 68.5
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.2e-39 166.8 118 69.5
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.4e-38 164.1 144 57.6
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.9e-38 163.7 164 54.9
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-36 157.5 189 50.3
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.8e-36 157.1 159 49.7
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 5.3e-33 145.6 136 56.6
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 6.5e-31 138.7 96 74.0
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.1e-30 137.9 155 46.5
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.4e-28 131.0 100 67.0
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 2.2e-23 113.6 75 72.0
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 3.8e-23 112.8 103 54.4
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.2e-21 107.8 81 67.9
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 2.1e-21 107.1 80 66.2
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 8.8e-20 101.7 89 58.4
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.5e-19 100.9 123 47.2
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.8e-17 94.0 90 54.4
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 3.5e-16 89.7 113 46.9
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 1.4e-09 67.8 133 37.6
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 2.0e-08 63.9 48 64.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 4.5e-08 62.8 111 39.6
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.7e-07 60.8 112 37.5
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 1.7e-07 60.8 160 31.2
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 1.5e-06 57.8 110 35.5
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.5e-06 57.0 53 52.8
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 7.2e-06 55.5 155 30.3


User provided reference genes

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