Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 8.5e-105 383.6 189 100.0
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 1.6e-87 326.2 189 81.5
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.5e-61 240.0 185 59.5
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 2.6e-61 239.2 190 61.6
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 2.6e-61 239.2 188 61.7
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 7.5e-61 237.7 188 58.5
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 7.5e-61 237.7 188 58.5
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 7.5e-61 237.7 188 61.2
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.4e-59 233.4 189 60.8
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 1.9e-59 233.0 189 58.7
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.9e-59 233.0 188 57.4
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.4e-59 232.6 185 60.0
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 3.2e-59 232.3 188 58.5
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 4.1e-59 231.9 186 59.7
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 5.4e-59 231.5 188 58.5
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 5.4e-59 231.5 191 57.6
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 7.0e-59 231.1 188 58.5
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.2e-59 230.7 188 58.5
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 9.2e-59 230.7 189 59.3
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 9.2e-59 230.7 189 59.3
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.7e-58 229.2 188 58.0
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 3.5e-58 228.8 188 56.9
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.5e-58 228.8 188 57.4
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 3.5e-58 228.8 188 58.5
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 4.6e-58 228.4 188 60.1
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 6.0e-58 228.0 189 55.6
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 6.0e-58 228.0 189 58.7
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 6.0e-58 228.0 188 57.4
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 6.0e-58 228.0 186 58.6
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 6.0e-58 228.0 188 59.0
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 7.8e-58 227.6 188 59.0
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.7e-57 226.5 188 56.9
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.7e-57 226.5 188 58.0
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.7e-57 226.5 188 57.4
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.3e-57 226.1 186 58.1
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 2.3e-57 226.1 188 59.0
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.3e-57 226.1 188 56.9
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 3.0e-57 225.7 189 57.7
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 3.9e-57 225.3 189 57.1
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 3.9e-57 225.3 189 57.7
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 5.1e-57 224.9 188 58.5
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 6.6e-57 224.6 188 58.5
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 6.6e-57 224.6 188 58.5
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 6.6e-57 224.6 188 58.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 6.6e-57 224.6 188 58.5
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.6e-57 224.2 188 56.9
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 8.6e-57 224.2 188 56.4
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.1e-56 223.8 188 58.5
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-56 223.8 188 55.3
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.1e-56 223.8 188 56.9
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.5e-56 223.4 185 57.3
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.9e-56 223.0 188 55.3
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.5e-56 222.6 176 59.7
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 2.5e-56 222.6 188 56.9
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 2.5e-56 222.6 190 60.0
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 2.5e-56 222.6 188 55.3
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 4.3e-56 221.9 190 56.8
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 7.3e-56 221.1 188 57.4
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 9.5e-56 220.7 189 56.6
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.2e-55 220.3 184 56.0
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 1.6e-55 219.9 186 56.5
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.6e-55 219.9 189 56.1
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 2.1e-55 219.5 186 55.9
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.8e-55 219.2 192 55.2
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 4.7e-55 218.4 185 56.8
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 6.2e-55 218.0 188 56.9
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 6.2e-55 218.0 185 56.2
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 8.1e-55 217.6 192 56.8
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 8.1e-55 217.6 189 55.6
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.1e-54 217.2 184 54.3
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.4e-54 216.9 188 53.7
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.4e-54 216.9 189 55.0
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.3e-54 216.1 188 53.7
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 2.3e-54 216.1 192 54.7
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 3.1e-54 215.7 189 55.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.0e-54 215.3 176 57.4
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 5.2e-54 214.9 187 56.1
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.2e-53 213.8 189 54.0
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.2e-53 213.8 189 54.0
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 2.0e-53 213.0 188 54.3
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.6e-53 212.6 189 55.6
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 2.6e-53 212.6 189 54.0
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 3.4e-53 212.2 189 54.0
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 3.4e-53 212.2 189 54.0
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 7.5e-53 211.1 188 53.7
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 7.5e-53 211.1 187 53.5
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.3e-52 210.3 188 54.8
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 6.4e-52 208.0 189 54.5
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 6.4e-52 208.0 169 58.0
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 8.3e-52 207.6 160 61.2
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 8.3e-52 207.6 188 53.2
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.4e-51 206.8 166 60.2
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.9e-51 206.5 159 61.0
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.9e-51 206.5 177 58.2
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 3.2e-51 205.7 183 55.7
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 4.1e-51 205.3 184 56.0
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 6.0e-50 201.4 176 58.0
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 7.8e-50 201.1 174 55.2
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 3.0e-49 199.1 170 58.8
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.2e-47 193.7 184 51.1
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 2.1e-47 193.0 160 58.1
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.4e-46 189.5 154 58.4
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 5.2e-46 188.3 177 52.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 1.3e-44 183.7 173 53.8
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 2.9e-44 182.6 182 52.7
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 3.5e-42 175.6 125 66.4
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-40 170.2 124 62.9
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 5.6e-40 168.3 130 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 7.3e-40 167.9 184 45.1
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 7.3e-40 167.9 189 44.4
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 8.1e-39 164.5 194 44.3
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.4e-38 162.9 124 61.3
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 5.8e-37 158.3 133 60.9
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 7.6e-37 157.9 124 59.7
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 9.9e-37 157.5 177 47.5
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.7e-36 156.8 161 50.9
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.6e-32 141.7 105 61.9
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.3e-31 140.6 120 53.3
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.3e-31 140.6 103 62.1
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.5e-29 133.7 103 60.2
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 2.0e-29 133.3 114 52.6
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.2e-28 129.8 103 59.2
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 4.9e-28 128.6 125 53.6
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.1e-27 127.5 135 48.1
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.4e-27 127.1 102 58.8
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 2.4e-27 126.3 102 57.8
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.6e-26 123.6 133 50.4
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 3.5e-26 122.5 158 39.9
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.3e-25 120.6 193 38.9
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.9e-24 116.7 91 59.3
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 4.5e-21 105.5 83 55.4
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 8.4e-20 101.3 203 32.0
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 2.0e-13 80.1 49 69.4
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 7.1e-11 71.6 120 32.5
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 7.9e-10 68.2 49 61.2
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 4.3e-08 62.4 162 29.0


User provided reference genes

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