Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0909500 Oryza sativa ssp. japonica HOM05D001688 ORTHO05D001571 9.6e-114 413.7 237 100.0
Os01g0909100 Oryza sativa ssp. japonica HOM05D001688 ORTHO05D001571 2.4e-24 116.7 167 41.3
CARHR151390 Cardamine hirsuta HOM05D001688 ORTHO05D001571 7.8e-15 85.1 121 34.7
THA.LOC104810899 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 4.3e-13 79.3 120 36.7
Zm00001eb365080 Zea mays HOM05D001688 ORTHO05D001571 5.6e-13 79.0 138 36.2
Zm00001eb356490 Zea mays HOM05D001688 ORTHO05D001571 7.3e-13 78.6 168 31.0
THA.LOC104799534 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 9.6e-13 78.2 123 35.8
Dinv19823 Davidia involucrata HOM05D001688 ORTHO05D001571 1.4e-11 74.3 198 30.3
Zm00001eb365100 Zea mays HOM05D001688 ORTHO05D001571 1.4e-11 74.3 202 28.7
Glyma.13G319500 Glycine max HOM05D001688 ORTHO05D001571 1.8e-11 73.9 171 30.4
HanXRQChr02g0055001 Helianthus annuus HOM05D001688 ORTHO05D001571 3.1e-11 73.2 93 38.7
TAR633G0649 Trochodendron aralioides HOM05D001688 ORTHO05D001571 3.1e-11 73.2 165 29.7
arahy.Tifrunner.gnm1.ann1.63G8L5 Arachis hypogaea HOM05D001688 ORTHO05D001571 4.0e-11 72.8 168 30.4
HanXRQChr02g0054811 Helianthus annuus HOM05D001688 ORTHO05D001571 4.0e-11 72.8 97 37.1
CDE06G2425 Ceratophyllum demersum HOM05D001688 ORTHO05D001571 5.3e-11 72.4 161 28.6
Phvul.005G127600 Phaseolus vulgaris HOM05D001688 ORTHO05D001571 5.3e-11 72.4 118 36.4
TWI31G0812 Tripterygium wilfordii HOM05D001688 ORTHO05D001571 5.3e-11 72.4 169 30.8
Glyma.11G189500 Glycine max HOM05D001688 ORTHO05D001571 6.9e-11 72.0 114 35.1
THA.LOC104800559 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 6.9e-11 72.0 144 25.7
Aa31LG1G12970 Aethionema arabicum HOM05D001688 ORTHO05D001571 9.0e-11 71.6 195 28.7
Manes.11G156700 Manihot esculenta HOM05D001688 ORTHO05D001571 1.2e-10 71.2 166 30.7
Os05g0597100 Oryza sativa ssp. japonica HOM05D001688 ORTHO05D001571 1.5e-10 70.9 109 34.9
Potri.009G149400 Populus trichocarpa HOM05D001688 ORTHO05D001571 2.0e-10 70.5 111 34.2
THA.LOC104816375 Tarenaya hassleriana HOM05D001688 ORTHO05D001571 2.0e-10 70.5 142 31.0
Sabra04G0129300 Salix brachista HOM05D001688 ORTHO05D001571 2.6e-10 70.1 142 29.6
Sabra18G0094500 Salix brachista HOM05D001688 ORTHO05D001571 2.6e-10 70.1 142 29.6
TAR636G1096 Trochodendron aralioides HOM05D001688 ORTHO05D001571 2.6e-10 70.1 119 31.1
TAR636G3115 Trochodendron aralioides HOM05D001688 ORTHO05D001571 2.6e-10 70.1 119 31.1
DCAR_015480 Daucus carota HOM05D001688 ORTHO05D001571 4.4e-10 69.3 101 33.7
Potri.006G116500 Populus trichocarpa HOM05D001688 ORTHO05D001571 4.4e-10 69.3 167 30.5
Sabra09G0118000 Salix brachista HOM05D001688 ORTHO05D001571 4.4e-10 69.3 111 33.3
Atru.chr8.1641 Acer truncatum HOM05D001688 ORTHO05D001571 9.9e-10 68.2 207 27.1
PSO063G4060 Papaver somniferum HOM05D001688 ORTHO05D001571 1.3e-09 67.8 93 36.6
Thecc.05G080400 Theobroma cacao HOM05D001688 ORTHO05D001571 1.3e-09 67.8 121 35.5
CARHR209560 Cardamine hirsuta HOM05D001688 ORTHO05D001571 2.2e-09 67.0 168 27.4
Glyma.12G084700 Glycine max HOM05D001688 ORTHO05D001571 2.2e-09 67.0 156 31.4
Medtr2g084815 Medicago truncatula HOM05D001688 ORTHO05D001571 2.2e-09 67.0 151 29.8
PSO339G0838 Papaver somniferum HOM05D001688 ORTHO05D001571 2.2e-09 67.0 93 35.5
BcaB05g22711 Brassica carinata HOM05D001688 ORTHO05D001571 2.9e-09 66.6 114 32.5
PGR119G1578 Punica granatum HOM05D001688 ORTHO05D001571 2.9e-09 66.6 171 26.9
TPR.G10243 Trifolium pratense HOM05D001688 ORTHO05D001571 2.9e-09 66.6 116 30.2
TAR369G0885 Trochodendron aralioides HOM05D001688 ORTHO05D001571 2.9e-09 66.6 98 31.6
Ciclev10012182m.g Citrus clementina HOM05D001688 ORTHO05D001571 3.8e-09 66.2 168 27.4
Glyma.12G181400 Glycine max HOM05D001688 ORTHO05D001571 3.8e-09 66.2 170 30.0
Manes.09G060536 Manihot esculenta HOM05D001688 ORTHO05D001571 3.8e-09 66.2 170 28.2
Potri.004G188800 Populus trichocarpa HOM05D001688 ORTHO05D001571 3.8e-09 66.2 147 27.9
CSS0033564 Camellia sinensis var. sinensis HOM05D001688 ORTHO05D001571 4.9e-09 65.9 167 27.5
Ca_08965_v3 Cicer arietinum L. HOM05D001688 ORTHO05D001571 4.9e-09 65.9 200 29.0
Thhalv10014266m.g Eutrema salsugineum HOM05D001688 ORTHO05D001571 4.9e-09 65.9 136 28.7
Lalb_Chr20g0112191 Lupinus albus HOM05D001688 ORTHO05D001571 4.9e-09 65.9 96 33.3
PGR102G0030 Punica granatum HOM05D001688 ORTHO05D001571 4.9e-09 65.9 113 31.0
BraA02t05679Z Brassica rapa HOM05D001688 ORTHO05D001571 8.4e-09 65.1 107 33.6
Lj1g0014712 Lotus japonicus HOM05D001688 ORTHO05D001571 1.1e-08 64.7 97 32.0
MSTRG.19226 Avicennia marina HOM05D001688 ORTHO05D001571 1.4e-08 64.3 147 28.6
BNapus_Darmor_BZH_scaffold_38p00470 Brassica napus HOM05D001688 ORTHO05D001571 1.9e-08 63.9 106 34.0
Lj3g0001709 Lotus japonicus HOM05D001688 ORTHO05D001571 1.9e-08 63.9 171 26.3
Aa31LG1G21510 Aethionema arabicum HOM05D001688 ORTHO05D001571 2.4e-08 63.5 99 28.3
BcaB05g22713 Brassica carinata HOM05D001688 ORTHO05D001571 2.4e-08 63.5 110 32.7
BcaC03g13906 Brassica carinata HOM05D001688 ORTHO05D001571 2.4e-08 63.5 167 27.5
CiPaw.09G008200 Carya illinoinensis HOM05D001688 ORTHO05D001571 2.4e-08 63.5 110 31.8
Dinv21263 Davidia involucrata HOM05D001688 ORTHO05D001571 2.4e-08 63.5 172 27.9
unitig_578.g16376 Utricularia gibba HOM05D001688 ORTHO05D001571 2.4e-08 63.5 96 30.2
HPP92_023108 Vanilla planifolia HOM05D001688 ORTHO05D001571 2.4e-08 63.5 83 39.8
AL6G13270 Arabidopsis lyrata HOM05D001688 ORTHO05D001571 3.2e-08 63.2 122 32.8
MELO3C009430.2 Cucumis melo HOM05D001688 ORTHO05D001571 3.2e-08 63.2 131 27.5
Gorai.002G243000 Gossypium raimondii HOM05D001688 ORTHO05D001571 3.2e-08 63.2 116 31.0
Zm00001eb333840 Zea mays HOM05D001688 ORTHO05D001571 3.2e-08 63.2 73 43.8
BcaB05g22708 Brassica carinata HOM05D001688 ORTHO05D001571 4.2e-08 62.8 106 33.0
COL.COLO4_29822 Corchorus olitorius HOM05D001688 ORTHO05D001571 4.2e-08 62.8 98 36.7
Duzib093G2204 Durio zibethinus HOM05D001688 ORTHO05D001571 4.2e-08 62.8 120 31.7
Lalb_Chr03g0027901 Lupinus albus HOM05D001688 ORTHO05D001571 4.2e-08 62.8 138 31.2
BolC2t07186H Brassica oleracea HOM05D001688 ORTHO05D001571 5.4e-08 62.4 167 26.9
MBI16_g38690_MAGBIO Magnolia biondii HOM05D001688 ORTHO05D001571 5.4e-08 62.4 154 30.5
AT5G03740 Arabidopsis thaliana HOM05D001688 ORTHO05D001571 7.1e-08 62.0 94 31.9
ClCG10G019420 Citrullus lanatus HOM05D001688 ORTHO05D001571 7.1e-08 62.0 106 30.2
Sp6g22690 Schrenkiella parvula HOM05D001688 ORTHO05D001571 7.1e-08 62.0 106 32.1
Zm00001eb069250 Zea mays HOM05D001688 ORTHO05D001571 9.3e-08 61.6 74 43.2
Sp6g38980 Schrenkiella parvula HOM05D001688 ORTHO05D001571 1.2e-07 61.2 112 28.6
BcaC01g06576 Brassica carinata HOM05D001688 ORTHO05D001571 1.6e-07 60.8 97 32.0
ClCG02G021880 Citrullus lanatus HOM05D001688 ORTHO05D001571 1.6e-07 60.8 177 26.6
Gohir.A01G209500 Gossypium hirsutum HOM05D001688 ORTHO05D001571 1.6e-07 60.8 113 31.0
Gorai.007G371300 Gossypium raimondii HOM05D001688 ORTHO05D001571 1.6e-07 60.8 123 29.3
MSTRG.26653 Avicennia marina HOM05D001688 ORTHO05D001571 2.1e-07 60.5 190 24.7
BcaB01g04702 Brassica carinata HOM05D001688 ORTHO05D001571 2.1e-07 60.5 167 28.1
Glyma.19G191000 Glycine max HOM05D001688 ORTHO05D001571 2.1e-07 60.5 96 29.2
Lsat_1_v5_gn_6_42560 Lactuca sativa HOM05D001688 ORTHO05D001571 2.1e-07 60.5 108 34.3
Sabra06G0090900 Salix brachista HOM05D001688 ORTHO05D001571 2.1e-07 60.5 97 32.0
Sed0003899 Sechium edule HOM05D001688 ORTHO05D001571 2.1e-07 60.5 175 26.3
Sopen11g026550 Solanum pennellii HOM05D001688 ORTHO05D001571 2.7e-07 60.1 150 28.0
unitig_8.g4723 Utricularia gibba HOM05D001688 ORTHO05D001571 2.7e-07 60.1 96 28.1
C03p12440 Brassica napus HOM05D001688 ORTHO05D001571 4.6e-07 59.3 97 30.9
CsaV3_3G036760 Cucumis sativus L. HOM05D001688 ORTHO05D001571 4.6e-07 59.3 167 25.7
BcaB01g04704 Brassica carinata HOM05D001688 ORTHO05D001571 6.0e-07 58.9 166 28.3
A03p10810 Brassica napus HOM05D001688 ORTHO05D001571 6.0e-07 58.9 97 30.9
HPP92_011561 Vanilla planifolia HOM05D001688 ORTHO05D001571 6.0e-07 58.9 83 36.1
MELO3C021456.2 Cucumis melo HOM05D001688 ORTHO05D001571 7.9e-07 58.5 158 24.1
Prupe.6G118700 Prunus persica HOM05D001688 ORTHO05D001571 7.9e-07 58.5 146 31.5
Thhalv10014245m.g Eutrema salsugineum HOM05D001688 ORTHO05D001571 1.0e-06 58.2 112 27.7
GSVIVG01031404001 Vitis vinifera HOM05D001688 ORTHO05D001571 1.0e-06 58.2 94 29.8
Zm00001eb143960 Zea mays HOM05D001688 ORTHO05D001571 1.0e-06 58.2 114 36.0
BcaC03g13902 Brassica carinata HOM05D001688 ORTHO05D001571 1.3e-06 57.8 97 32.0
Gohir.D11G341300 Gossypium hirsutum HOM05D001688 ORTHO05D001571 1.3e-06 57.8 119 29.4
Actinidia03679 Actinidia chinensis HOM05D001688 ORTHO05D001571 1.7e-06 57.4 146 27.4
MSTRG.18730 Avicennia marina HOM05D001688 ORTHO05D001571 1.7e-06 57.4 151 27.2
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.7e-06 57.4 107 29.9
BcaB08g36411 Brassica carinata HOM05D001688 ORTHO05D001571 2.3e-06 57.0 109 31.2
CiPaw.13G141200 Carya illinoinensis HOM05D001688 ORTHO05D001571 2.3e-06 57.0 80 30.0
Gohir.D01G198600 Gossypium hirsutum HOM05D001688 ORTHO05D001571 2.3e-06 57.0 113 30.1
Gorai.002G242800 Gossypium raimondii HOM05D001688 ORTHO05D001571 2.3e-06 57.0 114 30.7
HanXRQChr11g0351131 Helianthus annuus HOM05D001688 ORTHO05D001571 2.3e-06 57.0 94 31.9
VMungo1080G1713 Vigna mungo HOM05D001688 ORTHO05D001571 2.3e-06 57.0 71 39.4
Lalb_Chr22g0350621 Lupinus albus HOM05D001688 ORTHO05D001571 3.9e-06 56.2 95 33.7
BcaB01g01141 Brassica carinata HOM05D001688 ORTHO05D001571 5.1e-06 55.8 80 35.0
Duzib168G1452 Durio zibethinus HOM05D001688 ORTHO05D001571 5.1e-06 55.8 113 27.4
MBI05_g37577_MAGBIO Magnolia biondii HOM05D001688 ORTHO05D001571 5.1e-06 55.8 97 36.1
Sc20g0006000 Simmondsia chinensis HOM05D001688 ORTHO05D001571 5.1e-06 55.8 97 25.8
C02p11140 Brassica napus HOM05D001688 ORTHO05D001571 6.6e-06 55.5 163 27.0
Gorai.006G109300 Gossypium raimondii HOM05D001688 ORTHO05D001571 6.6e-06 55.5 167 26.3
Zm00001eb041580 Zea mays HOM05D042183 ORTHO05D001571 6.6e-06 55.5 105 38.1
BcaC03g13904 Brassica carinata HOM05D025641 ORTHO05D027280 8.7e-06 55.1 78 37.2
C02p11090 Brassica napus HOM05D001688 ORTHO05D001571 8.7e-06 55.1 78 37.2
CsaV3_6G014690 Cucumis sativus L. HOM05D001688 ORTHO05D001571 8.7e-06 55.1 94 27.7
Duzib170G0280 Durio zibethinus HOM05D001688 ORTHO05D001571 8.7e-06 55.1 172 25.6
Migut.L01752 Erythranthe guttata HOM05D001688 ORTHO05D001571 8.7e-06 55.1 97 28.9
Gohir.A09G092600 Gossypium hirsutum HOM05D001688 ORTHO05D001571 8.7e-06 55.1 170 27.6
Gohir.D09G092700 Gossypium hirsutum HOM05D001688 ORTHO05D001571 8.7e-06 55.1 165 26.7


User provided reference genes

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