Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1706.0 885 100.0
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1119.8 884 66.3
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1103.2 876 65.9
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1097.8 880 65.6
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1086.6 884 64.5
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1086.2 882 64.9
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1086.2 883 64.7
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1084.7 884 64.4
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1082.4 882 64.6
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1082.4 889 64.2
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1081.6 889 64.1
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1081.6 882 64.3
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1079.7 882 63.8
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1079.7 889 64.1
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1079.3 881 63.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1076.6 882 65.1
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1076.6 878 64.9
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 6.1e-312 1074.7 876 63.9
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 6.1e-312 1074.3 889 64.1
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 6.1e-312 1073.9 879 64.2
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 2.4e-311 1072.0 880 63.9
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 3.0e-311 1071.6 885 63.7
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 4.2e-311 1071.2 880 63.9
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 9.1e-311 1070.1 887 63.6
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 1.6e-310 1069.3 883 63.8
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 3.5e-310 1068.1 881 63.7
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 3.5e-310 1068.1 884 63.8
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.8e-310 1067.0 881 64.4
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 1.7e-309 1065.8 882 63.0
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 2.3e-309 1065.4 881 63.8
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 2.3e-309 1065.4 944 60.6
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 3.9e-309 1064.7 882 63.4
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 2.5e-308 1062.0 887 63.5
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 7.3e-308 1060.4 881 63.8
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 9.5e-308 1060.1 882 63.6
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 1.2e-307 1059.7 879 63.4
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 1.2e-307 1059.7 821 66.7
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 1.6e-307 1059.3 900 62.6
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 2.8e-307 1058.5 883 63.2
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 3.1e-306 1055.0 880 62.5
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 8.9e-306 1053.5 883 63.0
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 2.0e-305 1052.4 881 63.1
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 2.6e-305 1052.0 887 62.6
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 2.6e-305 1052.0 886 63.0
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 2.6e-305 1052.0 879 63.1
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 4.4e-305 1051.2 942 59.7
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 9.9e-305 1050.0 886 62.3
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 1.7e-304 1049.3 881 62.0
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 5.4e-303 1044.3 883 63.1
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 7.1e-303 1043.9 878 62.9
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 1.6e-302 1042.7 932 59.8
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 3.5e-302 1041.6 905 61.0
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 5.1e-301 1037.7 881 62.5
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 6.6e-301 1037.3 910 60.7
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 1.9e-300 1035.8 883 62.3
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 4.3e-300 1034.6 882 62.6
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 7.3e-300 1033.9 882 62.4
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-299 1032.7 881 62.0
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 2.8e-299 1031.9 893 60.8
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 4.7e-299 1031.2 964 58.8
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 1.1e-298 1030.0 894 61.3
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 2.4e-298 1028.9 880 61.8
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 6.9e-298 1027.3 879 60.6
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 9.0e-298 1026.9 900 60.0
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 1.2e-297 1026.5 880 61.5
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 3.4e-297 1025.0 883 61.9
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 2.2e-296 1022.3 880 61.5
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 1.4e-295 1019.6 885 60.7
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 9.3e-295 1016.9 893 60.2
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 2.1e-294 1015.8 893 60.1
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.1e-294 1015.8 893 60.1
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 4.0e-290 1001.5 897 60.5
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 3.4e-289 998.4 899 59.1
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.7e-288 996.1 899 59.0
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 4.9e-288 994.6 766 67.1
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 6.4e-288 994.2 900 58.8
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 8.4e-288 993.8 898 58.9
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 8.4e-288 993.8 898 58.9
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 8.4e-288 993.8 898 58.9
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 8.4e-288 993.8 898 58.9
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 1.4e-287 993.0 984 55.8
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 4.2e-287 991.5 898 58.7
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 4.2e-287 991.5 898 58.7
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 4.2e-287 991.5 899 58.3
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 9.3e-287 990.3 901 58.5
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 9.3e-287 990.3 827 62.6
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.7e-286 988.8 952 56.5
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 1.0e-285 986.9 911 59.5
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 5.6e-284 981.1 952 55.9
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 5.9e-265 917.9 883 55.5
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.0e-264 917.1 879 55.3
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 6.5e-256 887.9 767 61.1
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 4.5e-249 865.1 882 55.1
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 1.1e-247 860.5 699 64.8
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.5e-247 860.1 881 51.8
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 1.7e-243 846.7 880 53.8
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.8e-237 826.6 881 55.6
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 7.7e-233 811.2 885 52.0
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 3.2e-218 762.7 1175 41.8
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.5e-207 727.2 811 51.2
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 4.4e-204 715.7 664 58.0
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 3.2e-202 709.5 688 56.7
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 4.0e-197 692.6 764 52.6
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 1.4e-178 630.9 435 74.7
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 3.2e-178 629.8 640 53.3
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 4.6e-177 625.9 477 69.8
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 7.2e-154 548.9 887 38.9
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 2.4e-149 533.9 893 37.4
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 9.0e-149 531.9 370 74.1
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.8e-141 507.7 506 55.1
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 9.1e-141 505.4 348 74.4
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.5e-132 476.9 639 46.0
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 8.5e-123 445.7 861 33.9
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 4.4e-119 433.3 440 52.7
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 8.6e-99 365.9 989 30.1
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.5e-98 365.2 379 54.6
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 4.9e-94 350.1 400 48.2
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 2.3e-88 331.3 337 51.0
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 3.5e-84 317.4 288 62.5
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 2.9e-78 297.7 466 39.1
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.2e-71 275.8 366 43.4
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 2.9e-70 271.2 217 61.3
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 7.8e-68 263.1 325 44.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.7e-62 245.4 165 71.5
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.5e-55 220.7 297 44.4
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.1e-37 162.9 97 76.3
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 3.8e-30 137.9 108 61.1
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 5.5e-29 134.0 103 67.0
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 5.5e-29 134.0 101 65.3
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 3.6e-28 131.3 95 67.4
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 2.3e-27 128.6 288 32.3
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 2.6e-26 125.2 93 64.5
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.3e-25 122.9 107 57.9
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 4.8e-25 120.9 129 55.0
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.4e-24 119.4 85 68.2
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.5e-23 115.9 85 65.9
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 1.7e-22 112.5 105 58.1
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 8.5e-22 110.2 101 59.4
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 8.5e-22 110.2 125 48.0
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.1e-21 109.8 123 55.3
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.9e-21 109.0 184 42.9
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 5.5e-21 107.5 67 68.7
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 3.6e-20 104.8 101 57.4
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 4.7e-20 104.4 111 50.5
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 7.9e-20 103.6 106 53.8
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 1.0e-19 103.2 75 62.7
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.7e-17 95.9 183 32.2
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 2.0e-15 89.0 94 52.1
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.3e-14 86.3 68 63.2
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 5.0e-14 84.3 58 69.0
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 6.5e-14 84.0 68 61.8
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.6e-12 79.3 52 73.1
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-12 79.3 52 73.1
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.0e-11 76.6 53 79.2
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 8.8e-11 73.6 87 49.4
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-10 71.6 128 38.3
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.1e-08 66.6 38 81.6
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 3.1e-08 65.1 85 48.2
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 2.7e-07 62.0 50 68.0
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 7.7e-07 60.5 61 52.5


User provided reference genes

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