Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.9e-131 471.5 240 100.0
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 3.3e-130 468.4 240 98.8
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 2.0e-114 416.0 240 86.2
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.5e-101 373.2 211 86.3
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 5.5e-101 371.3 232 78.9
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 5.5e-101 371.3 233 79.0
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 7.2e-101 370.9 238 76.5
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 6.1e-100 367.9 239 75.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.0e-99 367.1 231 79.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 1.4e-99 366.7 231 77.5
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 6.8e-99 364.4 236 75.4
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 8.8e-99 364.0 239 75.7
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 1.2e-98 363.6 241 75.1
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.2e-98 363.6 233 76.0
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.6e-98 362.5 241 75.5
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 4.4e-98 361.7 226 77.9
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.4e-98 361.7 233 75.5
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.4e-98 361.7 233 75.5
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 4.4e-98 361.7 234 75.2
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 7.5e-98 360.9 232 76.3
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 9.8e-98 360.5 233 74.7
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-97 360.1 241 75.1
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.3e-97 360.1 233 77.7
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.7e-97 359.8 232 75.9
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.7e-97 359.8 238 72.3
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 2.2e-97 359.4 240 73.8
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 6.3e-97 357.8 233 74.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 8.3e-97 357.5 233 74.2
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 1.1e-96 357.1 230 76.5
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.1e-96 357.1 233 76.4
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.8e-96 356.3 233 75.5
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.8e-96 356.3 232 74.6
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 2.4e-96 355.9 241 73.4
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 4.1e-96 355.1 244 72.5
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.4e-96 354.8 235 73.6
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 5.4e-96 354.8 241 72.6
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 9.2e-96 354.0 232 74.6
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 9.2e-96 354.0 231 76.6
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 9.2e-96 354.0 230 75.2
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 9.2e-96 354.0 231 74.5
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.2e-95 353.6 227 76.7
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 1.6e-95 353.2 241 73.0
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.0e-95 352.8 230 75.2
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 2.0e-95 352.8 231 73.2
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.5e-95 351.7 232 75.0
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 4.5e-95 351.7 232 75.0
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.0e-94 350.5 232 74.6
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.0e-94 350.5 230 75.2
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 1.7e-94 349.7 241 72.6
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.3e-94 349.4 232 73.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.3e-94 349.4 235 72.8
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.3e-94 349.4 231 75.3
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.9e-94 349.0 231 74.5
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.6e-94 347.4 232 72.8
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 1.1e-93 347.1 266 67.3
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.5e-93 346.7 232 72.4
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.5e-93 346.7 231 73.2
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 1.9e-93 346.3 230 73.9
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 2.5e-93 345.9 239 71.1
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.3e-93 345.1 232 72.4
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 7.3e-93 344.4 233 71.2
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 9.5e-93 344.0 232 71.6
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.6e-92 342.0 233 73.0
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.7e-92 341.7 222 75.7
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 4.7e-92 341.7 229 72.5
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.4e-91 340.1 234 70.1
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.8e-91 339.7 232 72.4
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.8e-91 339.7 229 72.5
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 2.3e-91 339.3 233 72.5
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 2.3e-91 339.3 232 72.8
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 3.0e-91 339.0 233 70.8
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.0e-91 339.0 238 70.2
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 5.2e-91 338.2 211 78.7
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 5.2e-91 338.2 232 74.1
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 8.9e-91 337.4 224 75.4
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 8.9e-91 337.4 231 71.9
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.2e-90 337.0 260 67.3
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 1.5e-90 336.7 213 78.4
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 2.0e-90 336.3 232 71.6
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 3.4e-90 335.5 233 72.1
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.4e-90 335.1 232 70.7
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 5.7e-90 334.7 232 72.0
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 5.7e-90 334.7 232 72.0
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 5.7e-90 334.7 232 72.0
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.9e-89 332.4 232 69.8
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.1e-88 330.5 232 71.6
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.1e-88 330.5 233 71.2
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.8e-88 329.7 232 71.6
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 4.1e-88 328.6 240 70.0
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 4.1e-88 328.6 232 71.1
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.6e-87 326.6 264 64.4
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.7e-87 325.9 331 54.1
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 4.6e-87 325.1 231 71.4
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 4.6e-87 325.1 212 74.1
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.0e-86 323.9 287 58.9
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.3e-86 323.6 199 78.9
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.7e-86 323.2 232 70.7
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.3e-85 318.9 195 78.5
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 5.6e-85 318.2 196 79.1
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.2e-84 317.0 275 60.7
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 2.8e-84 315.8 232 67.2
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 6.8e-83 311.2 192 77.6
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 5.4e-80 301.6 199 74.9
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 2.7e-79 299.3 233 65.2
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.2e-76 290.4 189 75.1
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 2.9e-73 279.3 231 62.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 5.4e-72 275.0 232 62.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.0e-70 270.8 229 60.7
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 3.9e-70 268.9 232 56.9
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 3.6e-68 262.3 168 74.4
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.7e-65 253.4 222 55.4
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 3.2e-64 249.2 170 70.6
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.2e-64 249.2 159 74.8
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 5.6e-61 238.4 150 77.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 4.2e-56 222.2 136 76.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 7.1e-56 221.5 131 84.0
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 8.7e-54 214.5 141 74.5
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 8.7e-54 214.5 141 74.5
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 2.1e-52 209.9 188 55.3
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 5.8e-50 201.8 232 47.0
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 4.2e-48 195.7 132 70.5
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 8.7e-46 188.0 162 61.7
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.5e-45 187.2 127 73.2
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 7.4e-45 184.9 119 79.0
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 7.4e-45 184.9 125 70.4
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 2.1e-44 183.3 119 78.2
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.1e-44 183.3 182 55.5
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 4.0e-43 179.1 121 73.6
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 7.1e-40 168.3 120 67.5
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 4.3e-37 159.1 232 41.4
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.1e-32 141.7 123 62.6
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.6e-31 140.6 132 56.8
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.6e-31 140.6 129 58.1
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.0e-31 138.7 101 68.3
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 7.9e-31 138.3 182 44.5
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.1e-29 134.4 121 59.5
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 3.3e-29 132.9 85 72.9
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 1.8e-27 127.1 219 36.5
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 2.9e-25 119.8 68 80.9
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.6e-23 114.0 81 65.4
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.6e-23 114.0 91 58.2
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.9e-21 107.1 100 60.0
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.5e-21 106.7 153 34.6
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.3e-21 106.3 72 73.6
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 5.7e-21 105.5 106 53.8
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 3.1e-19 99.8 184 32.6
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.9e-16 90.5 51 78.4
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.7e-15 86.7 54 74.1
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 7.9e-15 85.1 62 67.7
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 1.0e-09 68.2 162 35.2
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.9e-09 66.6 37 81.1
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 7.2e-08 62.0 33 81.8


User provided reference genes

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