Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 4.6e-115 417.9 213 100.0
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 2.3e-74 282.7 227 68.3
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.5e-73 280.0 218 66.1
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 1.9e-73 279.6 218 67.4
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.9e-73 279.6 231 65.8
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 3.3e-73 278.9 224 64.7
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 9.7e-73 277.3 230 64.3
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.3e-72 276.9 213 67.1
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 1.3e-72 276.9 229 66.4
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.8e-72 275.8 231 63.6
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.8e-72 275.8 229 63.8
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 4.8e-72 275.0 213 66.7
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 4.8e-72 275.0 232 62.9
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 6.3e-72 274.6 229 64.2
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 6.3e-72 274.6 232 62.9
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.1e-71 273.9 231 63.6
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.1e-71 273.9 231 64.1
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.4e-71 273.5 229 63.8
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 2.4e-71 272.7 231 63.2
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 2.4e-71 272.7 223 63.7
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.0e-71 270.8 232 62.9
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 9.0e-71 270.8 232 63.4
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.2e-70 270.4 227 63.0
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 1.2e-70 270.4 232 62.9
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.5e-70 270.0 226 62.8
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.5e-70 270.0 226 62.8
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 2.0e-70 269.6 232 62.5
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 2.6e-70 269.2 231 61.0
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.4e-70 268.9 229 62.9
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.5e-70 268.5 214 66.4
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 4.5e-70 268.5 234 61.5
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.9e-70 268.1 231 62.8
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 5.9e-70 268.1 226 63.3
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 7.7e-70 267.7 224 63.8
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.0e-69 267.3 229 62.4
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.0e-69 267.3 231 60.6
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 1.3e-69 266.9 223 61.9
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 2.2e-69 266.2 231 61.0
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 2.9e-69 265.8 223 61.4
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 6.5e-69 264.6 222 62.6
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 8.5e-69 264.2 224 61.6
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.4e-68 263.5 231 61.9
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.9e-68 263.1 230 61.3
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 5.5e-68 261.5 228 62.3
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 5.5e-68 261.5 224 62.5
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 5.5e-68 261.5 232 61.2
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 9.4e-68 260.8 231 61.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 9.4e-68 260.8 231 61.9
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 2.7e-67 259.2 224 60.7
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 3.6e-67 258.8 230 62.2
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.8e-66 256.5 224 62.9
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 3.0e-66 255.8 205 65.9
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 3.9e-66 255.4 231 61.9
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 5.1e-66 255.0 221 63.3
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 6.7e-66 254.6 226 60.6
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 6.7e-66 254.6 224 62.5
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.1e-65 253.8 215 61.9
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.5e-65 253.4 205 64.4
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 2.5e-65 252.7 228 60.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.3e-64 250.4 234 59.0
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 2.2e-64 249.6 226 60.2
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.2e-64 249.6 229 59.0
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 2.2e-64 249.6 230 60.9
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 3.7e-64 248.8 206 62.6
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.4e-63 246.9 229 60.7
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.4e-63 246.9 217 61.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 4.1e-63 245.4 227 58.6
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 5.3e-63 245.0 226 59.3
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 6.9e-63 244.6 228 58.3
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 6.9e-63 244.6 227 60.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.2e-62 243.8 196 62.2
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 2.0e-62 243.0 223 58.3
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 4.5e-62 241.9 223 58.3
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.2e-61 239.6 223 58.7
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 6.5e-61 238.0 223 58.3
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 6.5e-61 238.0 226 58.8
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 8.5e-61 237.7 233 56.7
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 8.5e-61 237.7 272 51.5
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.2e-60 235.7 223 57.8
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 7.2e-60 234.6 256 52.7
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 1.6e-59 233.4 201 60.7
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.1e-59 233.0 233 55.8
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 4.7e-59 231.9 233 56.2
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.4e-58 230.3 204 60.8
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.8e-58 229.9 151 72.2
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 3.9e-58 228.8 145 73.1
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.3e-56 223.8 134 76.1
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.7e-56 223.4 195 64.1
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.4e-55 220.3 208 59.6
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 3.1e-55 219.2 201 58.2
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.8e-53 212.2 229 55.0
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.1e-52 210.7 232 53.4
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.5e-52 209.5 212 57.1
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 4.7e-51 205.3 215 55.8
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.0e-50 204.1 192 58.9
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 3.0e-50 202.6 254 49.2
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 2.0e-49 199.9 207 56.0
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 2.6e-49 199.5 124 73.4
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 5.7e-49 198.4 220 50.5
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 2.8e-48 196.1 223 51.6
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 8.2e-48 194.5 230 51.7
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.2e-45 186.4 229 49.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 2.2e-45 186.4 254 46.9
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 4.7e-43 178.7 178 57.9
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.3e-42 176.4 178 60.1
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.2e-41 174.1 122 62.3
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.6e-41 172.9 96 77.1
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 2.6e-41 172.9 246 44.7
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.4e-39 167.2 179 53.6
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 1.4e-39 167.2 214 48.1
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.3e-37 160.6 204 48.0
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.7e-37 160.2 218 45.4
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.5e-36 157.1 182 52.7
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 2.5e-36 156.4 172 51.2
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 4.2e-36 155.6 171 57.3
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 3.4e-33 146.0 252 38.5
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.1e-31 141.0 187 49.2
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 5.4e-31 138.7 92 71.7
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 4.4e-25 119.0 150 50.0
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 7.0e-23 111.7 70 74.3
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 3.0e-21 106.3 161 42.9
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 7.3e-20 101.7 57 75.4
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 4.7e-19 99.0 67 58.2
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 5.8e-17 92.0 94 50.0
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 6.4e-16 88.6 49 75.5
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.1e-15 87.8 50 70.0
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 6.0e-14 82.0 48 81.2
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.3e-13 80.9 48 81.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.3e-13 80.1 61 70.5
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.9e-13 79.3 48 79.2
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 5.0e-13 79.0 61 67.2
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 6.6e-13 78.6 74 56.8
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.9e-12 77.0 48 77.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.2e-11 72.0 43 79.1
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.2e-09 67.8 59 66.1
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.0e-09 67.0 86 50.0
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 8.3e-08 61.6 42 66.7
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 2.1e-06 57.0 29 79.3


User provided reference genes

Program Settings