Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu056126.3 Olea europaea HOM05D006053 ORTHO05D008381 1.8e-223 779.2 501 100.0
Cc02_g08350 Coffea canephora HOM05D006053 ORTHO05D008381 2.3e-88 330.5 510 47.6
MSTRG.23542 Avicennia marina HOM05D006053 ORTHO05D008381 1.8e-85 320.9 525 45.9
Nitab4.5_0001277g0050 Nicotiana tabacum HOM05D006053 ORTHO05D008381 1.6e-81 307.8 508 43.5
Dinv25975 Davidia involucrata HOM05D006053 ORTHO05D008381 2.1e-81 307.4 509 43.0
Actinidia02973 Actinidia chinensis HOM05D006053 ORTHO05D008381 3.5e-81 306.6 354 50.0
Nitab4.5_0000120g0180 Nicotiana tabacum HOM05D006053 ORTHO05D008381 3.5e-81 306.6 508 43.5
PGSC0003DMG400031213 Solanum tuberosum HOM05D006053 ORTHO05D008381 4.3e-79 299.7 497 43.7
Sopen06g008460 Solanum pennellii HOM05D006053 ORTHO05D008381 9.5e-79 298.5 338 49.1
Solyc06g018110.3 Solanum lycopersicum HOM05D006053 ORTHO05D008381 1.2e-78 298.1 339 48.7
Cfa001523 Carpinus fangiana HOM05D006053 ORTHO05D008381 1.6e-78 297.7 492 41.5
QL08p058728 Quercus lobata HOM05D006053 ORTHO05D008381 3.6e-78 296.6 354 47.5
CiPaw.02G181100 Carya illinoinensis HOM05D006053 ORTHO05D008381 4.7e-78 296.2 350 47.7
Hma1.2p1_0192F.1_g083600 Hydrangea macrophylla HOM05D006053 ORTHO05D008381 2.6e-76 290.4 509 47.2
Rhsim03G0127000 Rhododendron simsii HOM05D006053 ORTHO05D008381 5.8e-76 289.3 357 45.4
Prupe.2G229600 Prunus persica HOM05D006053 ORTHO05D008381 9.9e-76 288.5 352 47.7
Potri.010G209701 Populus trichocarpa HOM05D006053 ORTHO05D008381 1.3e-75 288.1 521 39.9
RhsimUnG0003300 Rhododendron simsii HOM05D006053 ORTHO05D008381 2.9e-75 287.0 342 47.4
MD01G1122100 Malus domestica HOM05D006053 ORTHO05D008381 6.4e-75 285.8 368 46.7
unitig_699.g19587 Utricularia gibba HOM05D006053 ORTHO05D008381 1.4e-74 284.6 380 44.5
GSVIVG01016604001 Vitis vinifera HOM05D006053 ORTHO05D008381 2.4e-74 283.9 353 45.9
SGA_v2.0_scaffold115G32148 Striga asiatica HOM05D006053 ORTHO05D008381 7.1e-74 282.3 562 44.7
Manes.10G035900 Manihot esculenta HOM05D006053 ORTHO05D008381 9.2e-74 282.0 361 45.4
Sabra10G0162000 Salix brachista HOM05D006053 ORTHO05D008381 1.2e-73 281.6 343 46.4
MD07G1191600 Malus domestica HOM05D006053 ORTHO05D008381 3.5e-73 280.0 354 47.2
Sc20g0002520 Simmondsia chinensis HOM05D006053 ORTHO05D008381 4.6e-73 279.6 353 47.6
Hund20006 Selenicereus undatus HOM05D006053 ORTHO05D008381 7.8e-73 278.9 366 46.4
DCAR_015208 Daucus carota HOM05D006053 ORTHO05D008381 2.3e-72 277.3 346 45.4
TAR623G1578 Trochodendron aralioides HOM05D006053 ORTHO05D008381 3.9e-72 276.6 506 42.3
Migut.L00294 Erythranthe guttata HOM05D006053 ORTHO05D008381 5.1e-72 276.2 512 43.8
Gohir.A10G214200 Gossypium hirsutum HOM05D006053 ORTHO05D008381 5.1e-72 276.2 504 43.5
Peaxi162Scf00408g00034 Petunia axillaris HOM05D006053 ORTHO05D008381 5.1e-72 276.2 390 43.3
Prupe.2G229700 Prunus persica HOM05D006053 ORTHO05D008381 8.6e-72 275.4 352 45.2
RcHm_v2.0_Chr1g0365851 Rosa chinensis HOM05D006053 ORTHO05D008381 8.6e-72 275.4 345 45.2
Gohir.D10G223000 Gossypium hirsutum HOM05D006053 ORTHO05D008381 1.9e-71 274.2 504 44.0
Nn2g10473 Nelumbo nucifera HOM05D006053 ORTHO05D008381 1.9e-71 274.2 360 44.7
Eucgr.G02908 Eucalyptus grandis HOM05D006053 ORTHO05D008381 1.2e-70 271.6 359 43.7
Gorai.011G253900 Gossypium raimondii HOM05D006053 ORTHO05D008381 2.1e-70 270.8 504 43.5
Lj8C88T8 Lonicera japonica HOM05D006053 ORTHO05D008381 2.1e-70 270.8 536 41.6
Ah.16g107460 Amaranthus hybridus HOM05D006053 ORTHO05D008381 1.1e-69 268.5 518 40.2
MBI05_g35605_MAGBIO Magnolia biondii HOM05D006053 ORTHO05D008381 1.1e-69 268.5 351 44.7
Lsat_1_v5_gn_9_66300 Lactuca sativa HOM05D006053 ORTHO05D008381 1.8e-69 267.7 507 43.2
TWI63G0066 Tripterygium wilfordii HOM05D006053 ORTHO05D008381 2.4e-69 267.3 372 43.3
arahy.Tifrunner.gnm1.ann1.AZ4556 Arachis hypogaea HOM05D006053 ORTHO05D008381 3.1e-69 266.9 520 40.8
Atru.chr12.522 Acer truncatum HOM05D006053 ORTHO05D008381 6.8e-69 265.8 344 45.9
Thecc.10G048700 Theobroma cacao HOM05D006053 ORTHO05D008381 6.8e-69 265.8 518 44.6
ClCG07G003140 Citrullus lanatus HOM05D006053 ORTHO05D008381 8.9e-69 265.4 328 45.7
Duzib114G0287 Durio zibethinus HOM05D006053 ORTHO05D008381 1.5e-68 264.6 512 43.6
MELO3C023836.2 Cucumis melo HOM05D006053 ORTHO05D008381 2.0e-68 264.2 345 44.3
FAN10G2741 Fragaria x ananassa HOM05D006053 ORTHO05D008381 3.4e-68 263.5 347 43.5
Ciclev10031409m.g Citrus clementina HOM05D006053 ORTHO05D008381 5.8e-68 262.7 367 41.7
CsaV3_5G006870 Cucumis sativus L. HOM05D006053 ORTHO05D008381 5.8e-68 262.7 350 44.0
FvH4_7g21531 Fragaria vesca HOM05D006053 ORTHO05D008381 7.6e-68 262.3 353 43.1
FAN06G2982 Fragaria x ananassa HOM05D006053 ORTHO05D008381 7.6e-68 262.3 353 43.1
EL10As19g24197 Beta vulgaris HOM05D006053 ORTHO05D008381 9.9e-68 261.9 365 44.4
ECA232G2518 Erigeron canadensis HOM05D006053 ORTHO05D008381 1.7e-67 261.2 342 43.9
FAN01G1874 Fragaria x ananassa HOM05D006053 ORTHO05D008381 2.2e-67 260.8 347 44.4
COL.COLO4_14945 Corchorus olitorius HOM05D006053 ORTHO05D008381 2.9e-67 260.4 351 43.6
FAN06G4406 Fragaria x ananassa HOM05D006053 ORTHO05D008381 2.9e-67 260.4 351 43.0
arahy.Tifrunner.gnm1.ann1.JRYV00 Arachis hypogaea HOM05D006053 ORTHO05D008381 3.8e-67 260.0 521 41.1
Phvul.007G011000 Phaseolus vulgaris HOM05D006053 ORTHO05D008381 5.4e-66 256.1 332 43.1
PGR142G2322 Punica granatum HOM05D006053 ORTHO05D008381 7.1e-66 255.8 348 42.5
VMungo0720G3082 Vigna mungo HOM05D006053 ORTHO05D008381 1.2e-65 255.0 329 43.8
Haze_17018 Corylus avellana HOM05D006053 ORTHO05D008381 6.0e-65 252.7 290 49.0
Glyma.20G098800 Glycine max HOM05D006053 ORTHO05D008381 6.0e-65 252.7 328 43.9
PSO339G3195 Papaver somniferum HOM05D006053 ORTHO05D008381 6.0e-65 252.7 353 41.9
ATR0113G011 Amborella trichopoda HOM05D006053 ORTHO05D008381 3.0e-64 250.4 353 40.2
AUR62038385 Chenopodium quinoa HOM05D006053 ORTHO05D008381 3.9e-64 250.0 390 41.3
HanXRQChr09g0247701 Helianthus annuus HOM05D006053 ORTHO05D008381 8.7e-64 248.8 532 41.5
Glyma.10G290400 Glycine max HOM05D006053 ORTHO05D008381 1.6e-62 244.6 325 42.8
PSO384G4800 Papaver somniferum HOM05D006053 ORTHO05D008381 2.1e-62 244.2 355 41.1
AUR62038388 Chenopodium quinoa HOM05D006053 ORTHO05D008381 2.8e-62 243.8 368 41.8
Sed0000212 Sechium edule HOM05D006053 ORTHO05D008381 2.8e-62 243.8 350 42.3
AUR62022513 Chenopodium quinoa HOM05D006053 ORTHO05D008381 3.6e-62 243.4 393 40.5
Lalb_Chr06g0164221 Lupinus albus HOM05D006053 ORTHO05D008381 6.9e-61 239.2 398 38.4
CSS0026153 Camellia sinensis var. sinensis HOM05D006053 ORTHO05D008381 2.6e-60 237.3 364 41.5
HPP92_006599 Vanilla planifolia HOM05D006053 ORTHO05D008381 7.6e-60 235.7 333 40.5
Cpa.g.sc1.353 Carica papaya HOM05D006053 ORTHO05D008381 1.7e-59 234.6 382 39.0
Zm00001eb266400 Zea mays HOM05D006053 ORTHO05D008381 3.2e-58 230.3 323 42.4
Aqoxy2G02006 Aquilegia oxysepala HOM05D006053 ORTHO05D008381 5.4e-58 229.6 311 43.1
SHI22531 Sapria himalayana HOM05D006053 ORTHO05D008381 1.2e-57 228.4 339 40.4
Sp5g07130 Schrenkiella parvula HOM05D006053 ORTHO05D008381 1.3e-56 224.9 379 39.1
BcaB01g00113 Brassica carinata HOM05D006053 ORTHO05D008381 8.7e-56 222.2 516 35.7
C08p30500 Brassica napus HOM05D006053 ORTHO05D008381 8.7e-56 222.2 372 36.8
BolC8t50669H Brassica oleracea HOM05D006053 ORTHO05D008381 8.7e-56 222.2 372 36.8
Carub.0005s2199 Capsella rubella HOM05D006053 ORTHO05D008381 2.5e-55 220.7 372 36.6
SEGI_38671 Sequoiadendron giganteum HOM05D006053 ORTHO05D008381 2.5e-55 220.7 326 41.1
Lj5g0015550 Lotus japonicus HOM05D006053 ORTHO05D008381 3.3e-55 220.3 327 41.3
THA.LOC104824082 Tarenaya hassleriana HOM05D006053 ORTHO05D008381 7.3e-55 219.2 336 38.7
A09p48230 Brassica napus HOM05D006053 ORTHO05D008381 1.6e-54 218.0 365 36.7
BraA09t40276Z Brassica rapa HOM05D006053 ORTHO05D008381 1.6e-54 218.0 365 36.7
AT3G55340 Arabidopsis thaliana HOM05D006053 ORTHO05D008381 1.4e-53 214.9 378 36.5
Aa31LG10G10350 Aethionema arabicum HOM05D006053 ORTHO05D008381 2.0e-52 211.1 349 38.1
CARHR165350 Cardamine hirsuta HOM05D006053 ORTHO05D008381 5.8e-52 209.5 338 38.5
FAN03G0601 Fragaria x ananassa HOM05D006053 ORTHO05D008381 1.3e-51 208.4 177 59.9
TPR.G14004 Trifolium pratense HOM05D006053 ORTHO05D008381 1.7e-51 208.0 272 43.8
Psat6g236560 Pisum sativum HOM05D006053 ORTHO05D008381 1.1e-50 205.3 345 37.7
Medtr1g115375 Medicago truncatula HOM05D006053 ORTHO05D008381 7.1e-50 202.6 265 43.0
AL5G36480 Arabidopsis lyrata HOM05D006053 ORTHO05D008381 7.4e-47 192.6 346 35.8
CDE09G1153 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 4.8e-46 189.9 256 43.0
FAN03G0613 Fragaria x ananassa HOM05D006053 ORTHO05D008381 1.6e-38 164.9 243 40.7
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 3.9e-32 143.7 354 28.2
Thhalv10010257m.g Eutrema salsugineum HOM05D006053 ORTHO05D008381 8.7e-32 142.5 376 30.3
Mapoly0121s0015 Marchantia polymorpha HOM05D006053 ORTHO05D008381 7.4e-31 139.4 330 30.6
AagrBONN_evm.TU.Sc2ySwM_368.1156 Anthoceros agrestis HOM05D006053 ORTHO05D008381 3.7e-30 137.1 261 34.1
BcaB02g08428 Brassica carinata HOM05D006053 ORTHO05D008381 1.1e-29 135.6 358 31.6
SMO118G0265 Selaginella moellendorffii HOM05D006053 ORTHO05D008381 3.4e-28 130.6 256 31.2
CDE02G2651 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 2.8e-22 110.9 197 35.5
vmacro07150 Vaccinium macrocarpon HOM05D006053 ORTHO05D008381 2.8e-22 110.9 73 69.9
Hma1.2p1_0192F.1_g083610 Hydrangea macrophylla HOM05D006053 ORTHO05D008381 1.4e-21 108.6 226 55.3
CDE04G3245 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 5.9e-20 103.2 257 28.0
Os03g0123200 Oryza sativa ssp. japonica HOM05D006053 ORTHO05D008381 5.0e-19 100.1 261 29.1
Os05g0114500 Oryza sativa ssp. japonica HOM05D006053 ORTHO05D008381 7.2e-18 96.3 78 60.3
arahy.Tifrunner.gnm1.ann1.QP8TMD Arachis hypogaea HOM05D012495 ORTHO05D013764 7.9e-17 92.8 61 75.4
MCO04G213 Micromonas commoda HOM05D006053 ORTHO05D008381 1.4e-16 92.0 271 25.1
Zm00001eb001700 Zea mays HOM05D006053 ORTHO05D008381 1.8e-16 91.7 267 26.6
Sabra08G0036400 Salix brachista HOM05D006053 ORTHO05D008381 7.4e-15 86.3 92 48.9
MD12G1025200 Malus domestica HOM05D001873 ORTHO05D001976 3.0e-08 64.3 301 23.9
CANSAT64G0757 Cannabis sativa HOM05D001873 ORTHO05D001976 6.7e-08 63.2 286 25.2
MD14G1023900 Malus domestica HOM05D001873 ORTHO05D001976 8.8e-08 62.8 301 24.3
Mapoly0003s0234 Marchantia polymorpha HOM05D003377 ORTHO05D004080 8.8e-08 62.8 164 28.7
Medtr4g074930 Medicago truncatula HOM05D002658 ORTHO05D003000 1.5e-07 62.0 101 32.7
Pp3c1_20040 Physcomitrium patens HOM05D003377 ORTHO05D004080 2.6e-07 61.2 158 29.7
SEGI_39288 Sequoiadendron giganteum HOM05D006053 ORTHO05D008381 2.6e-07 61.2 104 35.6
FvH4_6g18900 Fragaria vesca HOM05D001873 ORTHO05D001976 3.3e-07 60.8 301 24.3
FAN14G4575 Fragaria x ananassa HOM05D001873 ORTHO05D001976 3.3e-07 60.8 301 24.3
Ciclev10011562m.g Citrus clementina HOM05D001873 ORTHO05D001976 4.4e-07 60.5 297 22.6
Lsat_1_v5_gn_4_65420 Lactuca sativa HOM05D002658 ORTHO05D003000 4.4e-07 60.5 116 31.0
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 5.7e-07 60.1 99 31.3
TWI74G1254 Tripterygium wilfordii HOM05D001873 ORTHO05D001976 5.7e-07 60.1 277 24.2
RcHm_v2.0_Chr3g0473891 Rosa chinensis HOM05D001873 ORTHO05D001976 7.4e-07 59.7 301 22.9
arahy.Tifrunner.gnm1.ann1.L3BXHZ Arachis hypogaea HOM05D002658 ORTHO05D003000 1.3e-06 58.9 78 34.6
Duzib132G0973 Durio zibethinus HOM05D002658 ORTHO05D003000 1.3e-06 58.9 101 33.7
Lj1g0013048 Lotus japonicus HOM05D002658 ORTHO05D003000 1.7e-06 58.5 129 31.0
PGSC0003DMG400016922 Solanum tuberosum HOM05D003978 ORTHO05D006033 1.7e-06 58.5 143 29.4
Cre10.g466450 Chlamydomonas reinhardtii HOM05D006053 ORTHO05D001253 2.2e-06 58.2 88 38.6
Manes.08G026200 Manihot esculenta HOM05D001873 ORTHO05D001976 2.2e-06 58.2 277 22.7
Sabra09G0127500 Salix brachista HOM05D001873 ORTHO05D001976 2.2e-06 58.2 274 22.6
TAR633G2108 Trochodendron aralioides HOM05D001873 ORTHO05D001976 2.2e-06 58.2 301 24.3
unitig_61.g26469 Utricularia gibba HOM05D000142 ORTHO05D001253 2.2e-06 58.2 115 33.9
arahy.Tifrunner.gnm1.ann1.3AH3YU Arachis hypogaea HOM05D003978 ORTHO05D006033 2.8e-06 57.8 144 27.8
arahy.Tifrunner.gnm1.ann1.TJRX0G Arachis hypogaea HOM05D001873 ORTHO05D001976 2.8e-06 57.8 286 23.1
BcaC02g09748 Brassica carinata HOM05D006053 ORTHO05D023845 2.8e-06 57.8 150 33.3
Cfa016619 Carpinus fangiana HOM05D001873 ORTHO05D001976 2.8e-06 57.8 104 32.7
Manes.09G054400 Manihot esculenta HOM05D001873 ORTHO05D001976 2.8e-06 57.8 284 23.2
Nn2g14174 Nelumbo nucifera HOM05D001873 ORTHO05D001976 2.8e-06 57.8 304 23.7
Thecc.05G090400 Theobroma cacao HOM05D001873 ORTHO05D001976 2.8e-06 57.8 319 23.2
arahy.Tifrunner.gnm1.ann1.AJL8C7 Arachis hypogaea HOM05D001873 ORTHO05D001976 3.7e-06 57.4 309 22.7
Duzib248G1296 Durio zibethinus HOM05D002658 ORTHO05D003000 4.8e-06 57.0 101 31.7
Phvul.001G190900 Phaseolus vulgaris HOM05D001873 ORTHO05D001976 4.8e-06 57.0 288 22.6
Atru.chr8.1485 Acer truncatum HOM05D001873 ORTHO05D001976 6.3e-06 56.6 301 24.3
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 6.3e-06 56.6 101 34.7
Gohir.A01G012800 Gossypium hirsutum HOM05D002658 ORTHO05D003000 6.3e-06 56.6 78 37.2
Lj1g0005537 Lotus japonicus HOM05D001873 ORTHO05D001976 6.3e-06 56.6 269 23.4
Lj3g0010214 Lotus japonicus HOM05D002658 ORTHO05D003000 6.3e-06 56.6 95 32.6
Prupe.7G108900 Prunus persica HOM05D001873 ORTHO05D001976 6.3e-06 56.6 287 23.3
Solyc03g071560.4 Solanum lycopersicum HOM05D003978 ORTHO05D006033 6.3e-06 56.6 168 29.2
TAR636G0288 Trochodendron aralioides HOM05D001873 ORTHO05D001976 6.3e-06 56.6 309 24.3
THA.LOC104804892 Tarenaya hassleriana HOM05D001873 ORTHO05D001976 8.2e-06 56.2 265 23.4


User provided reference genes

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