Gene: AT3G55340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55340
  • Transcript Identifier AT3G55340.1
  • Gene Type Coding gene
  • Location Chr3 : 20515672-20517832 : positive

Gene Family Information

  • ID HOM05D006053
  • #Genes/#Species 130/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55340.1
  • symbol PHIP1
  • uniprot Q9M3B8

Descriptions

  • Description phragmoplastin interacting protein 1
  • Computational description phragmoplastin interacting protein 1 (PHIP1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G35410.1); Has 17490 Blast hits to 13137 proteins in 598 species: Archae - 10; Bacteria - 621; Metazoa - 8175; Fungi - 2466; Plants - 2451; Viruses - 16; Other Eukaryotes - 3751 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009920
IDA
Gene Ontologycell plate formation involved in plant-type cell wall biogenesis1
GO:0000914
IDA
Gene Ontologyphragmoplast assembly1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003729
IPI
Gene OntologymRNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005737
IEA
GOA Databasecytoplasm
GO:0016020
IEA
GOA Databasemembrane
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0009524
IEA
GOA Databasephragmoplast
GO:0009524
IDA
Gene Ontologyphragmoplast1
GO:0005886
IEA
GOA Databaseplasma membrane
GO:0019898
IDA
Gene Ontologyextrinsic component of membrane1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR036875 Zinc finger, CCHC-type superfamily
IPR034362 PHIP1, RNA recognition motif 2
IPR001878 Zinc finger, CCHC-type
IPR000504 RNA recognition motif domain
IPR034361 PHIP1, RNA recognition motif 1
Mapman id Description
13.4.2.7 Cell cycle organisation.cytokinesis.cell-plate formation.phragmoplastin-interacting factor (PHIP1)