Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu049828.1 Olea europaea HOM05D005536 ORTHO05D006999 1.4e-284 982.2 503 100.0
MSTRG.20308 Avicennia marina HOM05D005536 ORTHO05D006999 1.1e-231 806.6 498 81.1
Dinv19387 Davidia involucrata HOM05D005536 ORTHO05D006999 1.8e-231 805.8 493 82.8
Migut.B00813 Erythranthe guttata HOM05D005536 ORTHO05D006999 3.8e-229 798.1 492 81.1
SalBow8G1128 Salvia bowleyana HOM05D005536 ORTHO05D004100 3.6e-227 791.6 485 81.4
GSVIVG01023338001 Vitis vinifera HOM05D005536 ORTHO05D006999 3.6e-227 791.6 485 82.7
Solyc01g103950.4 Solanum lycopersicum HOM05D005536 ORTHO05D006999 4.7e-227 791.2 498 80.3
Hma1.2p1_1108F.1_g257740 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 1.0e-226 790.0 492 81.3
Cc02_g22780 Coffea canephora HOM05D005536 ORTHO05D006999 2.3e-226 788.9 495 80.8
PGSC0003DMG401023772 Solanum tuberosum HOM05D005536 ORTHO05D006999 2.3e-226 788.9 498 80.1
Sopen01g046340 Solanum pennellii HOM05D005536 ORTHO05D006999 1.2e-225 786.6 498 80.1
Nitab4.5_0000948g0240 Nicotiana tabacum HOM05D005536 ORTHO05D006999 2.0e-225 785.8 492 81.1
QL02p099453 Quercus lobata HOM05D005536 ORTHO05D006999 9.8e-225 783.5 495 79.8
Manes.10G122900 Manihot esculenta HOM05D005536 ORTHO05D006999 1.7e-224 782.7 494 80.0
CAN.G798.23 Capsicum annuum HOM05D005536 ORTHO05D006999 4.9e-224 781.2 498 79.5
Thecc.02G089300 Theobroma cacao HOM05D005536 ORTHO05D006999 1.4e-223 779.6 501 78.8
Peaxi162Scf00011g00635 Petunia axillaris HOM05D005536 ORTHO05D006999 3.2e-223 778.5 498 79.9
Haze_01749 Corylus avellana HOM05D005536 ORTHO05D006999 2.7e-222 775.4 494 79.6
Prupe.1G573200 Prunus persica HOM05D005536 ORTHO05D006999 2.7e-222 775.4 502 78.5
Rhsim11G0127400 Rhododendron simsii HOM05D005536 ORTHO05D006999 1.0e-221 773.5 494 78.3
Cfa005500 Carpinus fangiana HOM05D005536 ORTHO05D006999 5.0e-221 771.2 501 77.6
RcHm_v2.0_Chr7g0221201 Rosa chinensis HOM05D005536 ORTHO05D006999 4.3e-220 768.1 495 78.0
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 5.6e-220 767.7 494 77.1
Lj5A254G85 Lonicera japonica HOM05D005536 ORTHO05D006999 2.8e-219 765.4 490 80.0
CANSAT11G0651 Cannabis sativa HOM05D005536 ORTHO05D006999 2.3e-218 762.3 491 77.6
CiPaw.05G049900 Carya illinoinensis HOM05D005536 ORTHO05D006999 4.0e-218 761.5 491 79.8
vmacro01743 Vaccinium macrocarpon HOM05D005536 ORTHO05D006999 5.2e-218 761.1 503 78.1
Gorai.013G038700 Gossypium raimondii HOM05D005536 ORTHO05D006999 1.5e-217 759.6 494 76.5
DCAR_006692 Daucus carota HOM05D005536 ORTHO05D006999 5.8e-217 757.7 496 77.4
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 9.8e-217 756.9 494 76.3
Ca_00061_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 1.7e-216 756.1 491 76.0
Ciclev10000782m.g Citrus clementina HOM05D005536 ORTHO05D006999 1.7e-216 756.1 494 77.3
MBI06_g20964_MAGBIO Magnolia biondii HOM05D005536 ORTHO05D006999 1.7e-216 756.1 497 77.1
Medtr2g006350 Medicago truncatula HOM05D005536 ORTHO05D006999 1.7e-216 756.1 491 75.6
FvH4_5g28860 Fragaria vesca HOM05D005536 ORTHO05D006999 2.2e-216 755.7 495 76.8
FAN08G1062 Fragaria x ananassa HOM05D005536 ORTHO05D006999 2.9e-216 755.4 495 76.8
TAR376G0002 Trochodendron aralioides HOM05D005536 ORTHO05D006999 4.9e-216 754.6 493 76.9
Gohir.D13G034200 Gossypium hirsutum HOM05D005536 ORTHO05D006999 8.3e-216 753.8 494 76.3
Psat1g222160 Pisum sativum HOM05D005536 ORTHO05D006999 5.4e-215 751.1 491 75.8
TPR.G2082 Trifolium pratense HOM05D005536 ORTHO05D006999 7.0e-215 750.7 491 75.2
FAN04G2224 Fragaria x ananassa HOM05D005536 ORTHO05D006999 9.2e-215 750.4 491 77.0
Lalb_Chr20g0123601 Lupinus albus HOM05D005536 ORTHO05D006999 2.0e-214 749.2 494 76.7
unitig_749.g13511 Utricularia gibba HOM05D005536 ORTHO05D006999 3.5e-214 748.4 496 75.6
Atru.BG.35.p Acer truncatum HOM05D005536 ORTHO05D006999 6.0e-214 747.7 484 78.3
VMungo0540G0609 Vigna mungo HOM05D005536 ORTHO05D006999 6.0e-214 747.7 492 76.2
arahy.Tifrunner.gnm1.ann1.CHH5X5 Arachis hypogaea HOM05D005536 ORTHO05D006999 1.0e-213 746.9 493 75.9
Actinidia39023 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.3e-213 746.5 490 78.8
CSS0004244 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 1.7e-213 746.1 466 80.0
DCAR_025347 Daucus carota HOM05D005536 ORTHO05D006999 3.0e-213 745.3 497 75.7
Glyma.12G169900 Glycine max HOM05D005536 ORTHO05D006999 5.0e-213 744.6 491 74.9
FAN13G0194 Fragaria x ananassa HOM05D005536 ORTHO05D006999 6.6e-213 744.2 525 72.8
Glyma.08G188200 Glycine max HOM05D005536 ORTHO05D006999 8.6e-213 743.8 492 75.4
HanXRQChr16g0512011 Helianthus annuus HOM05D005536 ORTHO05D006999 8.6e-213 743.8 496 76.8
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 1.1e-212 743.4 496 75.6
Nn1g08381 Nelumbo nucifera HOM05D005536 ORTHO05D006999 2.5e-212 742.3 494 75.9
Lj6g0001247 Lotus japonicus HOM05D005536 ORTHO05D006999 3.3e-212 741.9 495 74.3
Potri.003G015700 Populus trichocarpa HOM05D005536 ORTHO05D006999 5.6e-212 741.1 495 76.2
arahy.Tifrunner.gnm1.ann1.DFQ1AC Arachis hypogaea HOM05D005536 ORTHO05D006999 7.3e-212 740.7 493 75.5
ECA236G1742 Erigeron canadensis HOM05D005536 ORTHO05D006999 1.2e-211 740.0 497 75.7
TWI59G0084 Tripterygium wilfordii HOM05D005536 ORTHO05D006999 1.2e-211 740.0 491 76.4
Sed0010884 Sechium edule HOM05D005536 ORTHO05D006999 2.3e-210 735.7 497 74.4
PSO170G4094 Papaver somniferum HOM05D005536 ORTHO05D006999 4.0e-210 734.9 502 75.1
PGR042G3208 Punica granatum HOM05D005536 ORTHO05D006999 4.0e-210 734.9 491 76.2
Phvul.006G216300 Phaseolus vulgaris HOM05D005536 ORTHO05D006999 5.2e-210 734.6 488 75.4
PSO017G0725 Papaver somniferum HOM05D005536 ORTHO05D006999 8.9e-210 733.8 502 75.1
MELO3C022605.2 Cucumis melo HOM05D005536 ORTHO05D006999 3.4e-209 731.9 496 73.8
Sabra03G0008600 Salix brachista HOM05D005536 ORTHO05D006999 4.4e-209 731.5 517 73.3
Aqoxy5G01212 Aquilegia oxysepala HOM05D005536 ORTHO05D006999 7.5e-209 730.7 492 76.4
Sc18g0006730 Simmondsia chinensis HOM05D005536 ORTHO05D006999 2.2e-208 729.2 488 74.6
Lsat_1_v5_gn_7_79100 Lactuca sativa HOM05D005536 ORTHO05D006999 2.9e-208 728.8 492 75.2
Eucgr.G00559 Eucalyptus grandis HOM05D005536 ORTHO05D006999 8.3e-208 727.2 488 75.4
CsaV3_5G012850 Cucumis sativus L. HOM05D005536 ORTHO05D006999 2.7e-206 722.2 492 74.0
Ah.03g139170 Amaranthus hybridus HOM05D005536 ORTHO05D006999 8.1e-203 710.7 499 73.5
Zm00001eb138710 Zea mays HOM05D005536 ORTHO05D006999 4.4e-201 704.9 487 72.7
AT1G22940 Arabidopsis thaliana HOM05D005536 ORTHO05D006999 7.6e-201 704.1 491 73.1
AUR62003134 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.1e-199 700.3 496 73.0
AL1G36500 Arabidopsis lyrata HOM05D005536 ORTHO05D006999 3.2e-199 698.7 491 72.5
Carub.0001s2244 Capsella rubella HOM05D005536 ORTHO05D006999 1.6e-198 696.4 491 72.5
SGA_v2.0_scaffold110G31339 Striga asiatica HOM05D005536 ORTHO05D006999 1.6e-198 696.4 624 61.5
Thhalv10007358m.g Eutrema salsugineum HOM05D005536 ORTHO05D006999 2.1e-198 696.0 491 72.9
A09p41800 Brassica napus HOM05D005536 ORTHO05D006999 6.0e-198 694.5 491 71.9
C05p22080 Brassica napus HOM05D005536 ORTHO05D006999 1.7e-197 693.0 491 72.1
CARHR023320 Cardamine hirsuta HOM05D005536 ORTHO05D006999 3.9e-197 691.8 491 72.3
BolC5t30904H Brassica oleracea HOM05D005536 ORTHO05D006999 5.1e-197 691.4 491 71.9
BcaC05g26200 Brassica carinata HOM05D005536 ORTHO05D006999 1.1e-196 690.3 491 71.9
BraA09t39668Z Brassica rapa HOM05D005536 ORTHO05D006999 4.3e-196 688.3 494 71.3
ATR1136G209 Amborella trichopoda HOM05D005536 ORTHO05D006999 1.2e-195 686.8 488 69.7
BcaB07g32292 Brassica carinata HOM05D005536 ORTHO05D006999 3.6e-195 685.3 491 71.3
Sp1g20400 Schrenkiella parvula HOM05D005536 ORTHO05D006999 4.7e-195 684.9 490 71.0
Aa31LG7G6950 Aethionema arabicum HOM05D005536 ORTHO05D006999 1.4e-194 683.3 491 71.3
AUR62007953 Chenopodium quinoa HOM05D005536 ORTHO05D006999 1.8e-194 682.9 476 73.3
MD15G1428400 Malus domestica HOM05D005536 ORTHO05D006999 3.1e-194 682.2 564 67.0
THA.LOC104806870 Tarenaya hassleriana HOM05D005536 ORTHO05D006999 3.1e-194 682.2 484 72.5
Atru.chr6.551 Acer truncatum HOM05D005536 ORTHO05D006999 6.6e-189 664.5 441 75.3
SEGI_00443 Sequoiadendron giganteum HOM05D005536 ORTHO05D006999 1.9e-188 662.9 491 68.2
COL.COLO4_11769 Corchorus olitorius HOM05D005536 ORTHO05D006999 1.8e-186 656.4 494 68.6
Nitab4.5_0002698g0120 Nicotiana tabacum HOM05D005536 ORTHO05D006999 3.3e-180 635.6 466 71.0
HPP92_027057 Vanilla planifolia HOM05D005536 ORTHO05D006999 4.8e-179 631.7 518 62.9
HPP92_011418 Vanilla planifolia HOM05D005536 ORTHO05D006999 5.3e-170 601.7 485 63.3
Pp3c1_39340 Physcomitrium patens HOM05D005536 ORTHO05D006999 6.5e-168 594.7 489 61.6
FAN18G3948 Fragaria x ananassa HOM05D005536 ORTHO05D006999 1.2e-166 590.5 385 75.8
Mapoly0071s0067 Marchantia polymorpha HOM05D005536 ORTHO05D006999 6.3e-163 578.2 494 60.3
SMO244G0051 Selaginella moellendorffii HOM05D005536 ORTHO05D006999 7.6e-161 571.2 500 58.0
Hma1.2p1_1108F.1_g257730 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 5.3e-146 521.9 323 83.3
CDE04G3554 Ceratophyllum demersum HOM05D005536 ORTHO05D006999 2.0e-145 520.0 491 56.0
Hma1.2p1_3213F.1_g334040 Hydrangea macrophylla HOM05D005536 ORTHO05D006999 3.2e-135 486.1 358 74.0
AagrBONN_evm.TU.Sc2ySwM_228.4801 Anthoceros agrestis HOM05D005536 ORTHO05D006999 2.2e-128 463.4 410 58.5
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 9.5e-111 404.8 563 43.9
Hund15496 Selenicereus undatus HOM05D005536 ORTHO05D006999 8.6e-104 381.7 257 72.4
Zm00001eb264810 Zea mays HOM05D005536 ORTHO05D006999 5.8e-100 369.0 275 68.7
CsaV3_5G012700 Cucumis sativus L. HOM05D005536 ORTHO05D006999 3.5e-81 306.6 370 49.2
Actinidia00197 Actinidia chinensis HOM05D005536 ORTHO05D006999 9.3e-74 282.0 460 41.5
MD08G1236400 Malus domestica HOM05D005536 ORTHO05D006999 1.2e-73 281.6 280 56.1
Cpa.g.c34456.1 Carica papaya HOM05D005536 ORTHO05D006999 2.7e-73 280.4 174 78.2
Ca_00038_v3 Cicer arietinum L. HOM05D005536 ORTHO05D006999 2.6e-68 263.8 202 64.9
PGR044G0806 Punica granatum HOM05D005536 ORTHO05D006999 1.4e-58 231.5 149 76.5
Actinidia27730 Actinidia chinensis HOM05D005536 ORTHO05D006999 2.4e-58 230.7 142 73.9
Cpa.g.sc31.109 Carica papaya HOM05D005536 ORTHO05D006999 5.6e-55 219.5 151 74.8
CBR_g6347 Chara braunii HOM05D000019 ORTHO05D000800 2.1e-54 217.6 233 51.1
MD15G1428300 Malus domestica HOM05D005536 ORTHO05D006999 1.4e-50 204.9 128 85.9
Cpa.g.sc31.106 Carica papaya HOM05D005536 ORTHO05D006999 2.3e-48 197.6 127 81.1
EL10Ac6g14966 Beta vulgaris HOM05D005536 ORTHO05D006999 7.7e-44 182.6 124 71.0
CBR_g6345 Chara braunii HOM05D005536 ORTHO05D006999 1.3e-43 181.8 148 64.2
Actinidia27729 Actinidia chinensis HOM05D005536 ORTHO05D006999 7.4e-39 166.0 156 57.7
CSS0010000 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 8.2e-38 162.5 99 84.8
CSS0024456 Camellia sinensis var. sinensis HOM05D005536 ORTHO05D006999 8.2e-38 162.5 99 84.8
Actinidia02850 Actinidia chinensis HOM05D005536 ORTHO05D006999 3.8e-35 153.7 301 37.2
Os12g0192500 Oryza sativa ssp. japonica HOM05D005536 ORTHO05D006999 3.8e-35 153.7 97 75.3
CsaV3_5G012690 Cucumis sativus L. HOM05D005536 ORTHO05D006999 5.5e-34 149.8 174 50.6
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 7.2e-34 149.4 217 41.0
MD08G1236300 Malus domestica HOM05D005536 ORTHO05D006999 3.6e-33 147.1 128 66.4
Cpa.g.sc31.103 Carica papaya HOM05D005536 ORTHO05D006999 5.2e-24 116.7 121 52.9
Actinidia02848 Actinidia chinensis HOM05D005536 ORTHO05D006999 1.6e-20 105.1 74 75.7
ECA236G5131 Erigeron canadensis HOM05D005536 ORTHO05D006999 2.7e-17 94.4 62 72.6
Actinidia27731 Actinidia chinensis HOM05D005536 ORTHO05D006999 6.7e-16 89.7 83 66.3
Haze_27076 Corylus avellana HOM05D005536 ORTHO05D006999 5.7e-15 86.7 184 33.2
Cpa.g.sc31.102 Carica papaya HOM05D005536 ORTHO05D006999 4.8e-14 83.6 50 82.0
COL.COLO4_00968 Corchorus olitorius HOM05D005536 ORTHO05D155286 2.9e-11 74.3 198 27.8
CARHR153920 Cardamine hirsuta HOM05D005536 ORTHO05D116486 6.5e-11 73.2 62 59.7
Medtr2g006225 Medicago truncatula HOM05D005536 ORTHO05D266164 1.6e-09 68.6 76 51.3


User provided reference genes

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