Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 2.0e-141 505.8 261 100.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 1.1e-94 350.5 261 73.6
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.1e-94 350.5 261 72.0
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.0e-92 344.0 261 70.9
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.3e-92 343.6 272 71.3
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 5.1e-92 341.7 260 68.1
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.5e-91 340.1 260 68.5
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.8e-90 335.9 263 68.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.4e-89 332.8 260 70.0
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 9.0e-89 330.9 261 70.1
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 5.9e-88 328.2 259 70.7
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.3e-87 327.0 239 73.2
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 2.2e-87 326.2 259 69.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.9e-87 325.9 260 68.1
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.0e-87 325.1 255 70.2
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 5.0e-87 325.1 243 71.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.5e-87 324.7 260 70.0
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 8.4e-87 324.3 243 71.6
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.1e-86 323.9 263 68.8
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 1.4e-86 323.6 237 72.2
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.9e-86 323.2 253 68.0
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.2e-86 322.4 260 70.0
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.2e-86 322.0 259 68.3
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 7.2e-86 321.2 261 68.2
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 7.2e-86 321.2 260 68.1
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 9.3e-86 320.9 246 69.1
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.2e-85 320.5 264 67.8
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-85 320.5 243 70.4
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.2e-85 320.5 243 70.4
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.2e-85 320.5 252 68.3
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.6e-85 320.1 241 70.1
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.6e-85 320.1 261 69.3
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-85 319.7 257 66.5
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 2.1e-85 319.7 217 75.6
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.7e-85 319.3 263 68.1
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 3.5e-85 318.9 261 65.1
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 3.5e-85 318.9 248 70.2
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 4.6e-85 318.5 259 68.0
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 4.6e-85 318.5 259 67.6
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.0e-84 317.4 237 70.9
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.0e-84 317.4 263 66.9
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.3e-84 317.0 259 66.4
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.3e-84 317.0 247 69.2
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.8e-84 316.6 183 85.8
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.8e-84 316.6 260 66.9
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.3e-84 316.2 257 66.5
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 3.0e-84 315.8 247 68.8
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 3.0e-84 315.8 259 66.4
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.0e-84 315.8 268 64.6
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 3.9e-84 315.5 247 67.6
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 5.1e-84 315.1 262 64.9
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 6.7e-84 314.7 251 66.9
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 6.7e-84 314.7 260 65.4
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 8.7e-84 314.3 253 67.2
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.5e-83 313.5 180 82.8
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.5e-83 313.5 186 81.7
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 4.3e-83 312.0 257 67.3
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 4.3e-83 312.0 264 66.7
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 9.7e-83 310.8 238 68.1
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 9.7e-83 310.8 256 65.2
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 9.7e-83 310.8 256 66.8
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 9.7e-83 310.8 261 66.3
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 9.7e-83 310.8 258 67.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 9.7e-83 310.8 260 66.5
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.3e-82 310.5 261 65.9
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 1.6e-82 310.1 186 82.3
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.6e-82 310.1 240 67.5
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.2e-82 309.7 259 66.8
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.2e-82 309.7 257 66.1
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 2.8e-82 309.3 261 67.0
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.7e-82 308.9 226 69.5
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.7e-82 308.9 265 65.7
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 6.3e-82 308.1 257 63.8
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 8.2e-82 307.8 252 64.7
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 8.2e-82 307.8 249 64.7
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.8e-81 306.6 215 70.7
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.8e-81 306.6 215 70.7
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 1.8e-81 306.6 259 65.3
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.8e-81 306.6 242 67.4
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 2.4e-81 306.2 230 68.3
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.1e-81 305.4 261 64.0
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.3e-81 305.1 259 67.2
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.2e-80 303.9 240 65.8
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.0e-80 303.1 261 63.6
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.6e-80 302.8 256 64.1
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.0e-79 300.8 260 63.8
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 3.8e-79 298.9 235 66.8
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 3.8e-79 298.9 249 67.9
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.0e-79 298.5 259 64.9
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 8.5e-79 297.7 259 63.3
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.9e-78 296.6 247 62.8
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 2.5e-78 296.2 261 64.4
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 3.2e-78 295.8 258 63.2
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 3.2e-78 295.8 265 64.9
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 7.2e-78 294.7 201 72.6
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 7.2e-78 294.7 261 65.5
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 9.4e-78 294.3 202 74.3
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 2.7e-77 292.7 244 64.3
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 6.7e-76 288.1 258 63.2
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 8.8e-76 287.7 180 75.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.8e-74 282.0 260 60.8
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 8.2e-74 281.2 224 65.6
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.1e-73 278.9 259 60.6
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 9.1e-73 277.7 228 63.2
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 9.1e-73 277.7 264 59.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-72 276.9 172 80.2
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.0e-72 276.6 241 67.6
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.4e-72 275.8 187 71.7
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.9e-72 275.0 243 61.3
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.0e-71 274.2 255 59.2
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 2.9e-71 272.7 258 58.5
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 5.0e-71 271.9 187 72.7
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.9e-70 270.0 264 58.3
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 4.2e-70 268.9 187 70.1
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 5.5e-70 268.5 187 69.5
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 5.5e-70 268.5 187 69.5
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 9.4e-70 267.7 245 60.0
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.2e-69 267.3 255 59.2
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.1e-69 266.5 243 58.8
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 2.7e-69 266.2 180 73.3
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 3.6e-69 265.8 237 62.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 6.1e-69 265.0 188 70.2
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.0e-68 264.2 260 55.8
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-68 264.2 243 58.4
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.8e-68 263.5 243 60.5
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 5.1e-68 261.9 259 56.8
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 8.8e-68 261.2 245 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 4.4e-67 258.8 187 69.5
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.8e-66 256.1 215 63.3
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 3.7e-66 255.8 177 71.8
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 6.3e-66 255.0 270 54.4
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 8.2e-66 254.6 221 59.7
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.1e-65 254.2 178 69.7
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 3.1e-65 252.7 260 59.2
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 4.1e-65 252.3 144 84.7
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 2.6e-64 249.6 252 57.9
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.0e-60 235.7 152 76.3
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 8.8e-60 234.6 176 65.9
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 2.2e-58 229.9 208 65.4
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 7.2e-54 214.9 208 59.1
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 6.1e-53 211.8 119 86.6
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.5e-51 207.2 133 72.9
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.3e-50 204.1 170 61.8
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 3.1e-49 199.5 214 61.2
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.7e-47 193.7 237 51.5
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.0e-47 192.2 121 79.3
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 2.5e-46 189.9 228 50.4
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 6.1e-45 185.3 201 50.2
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.0e-44 184.5 237 51.1
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 1.0e-44 184.5 141 67.4
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.7e-42 177.2 153 66.7
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.7e-42 177.2 129 71.3
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.6e-40 170.6 217 46.1
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-33 147.9 165 52.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 4.0e-28 129.4 78 78.2
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 5.2e-28 129.0 76 78.9
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 6.8e-28 128.6 76 77.6
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 4.4e-27 125.9 79 74.7
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.0e-23 114.8 132 53.8
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.6e-23 112.1 134 50.0
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.6e-21 107.5 88 64.8
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 5.2e-20 102.4 114 50.9
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.9e-14 84.0 158 39.2
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 4.7e-13 79.3 218 34.4
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.2e-11 74.7 52 71.2
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 2.0e-11 73.9 82 45.1
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.8e-11 72.4 147 31.3
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.2e-10 70.5 149 31.5
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 3.8e-10 69.7 153 32.7
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 7.1e-09 65.5 55 60.0
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 3.0e-07 60.1 117 36.8
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 3.9e-07 59.7 49 63.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-06 56.2 45 57.8


User provided reference genes

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