Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.1e-163 578.9 287 100.0
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.5e-113 413.3 289 70.9
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 8.4e-104 380.9 287 66.9
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 7.8e-102 374.4 288 64.6
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 7.8e-102 374.4 288 64.6
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.3e-101 372.9 290 64.5
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 8.7e-101 370.9 289 66.1
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 5.3e-98 361.7 286 65.4
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 6.9e-98 361.3 283 64.7
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 9.0e-98 360.9 292 62.0
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 2.0e-97 359.8 286 63.3
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 6.4e-96 354.8 282 62.8
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.9e-95 353.2 286 64.3
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.6e-94 350.1 282 62.4
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 3.5e-94 349.0 316 58.5
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 3.5e-94 349.0 291 62.2
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 6.0e-94 348.2 287 62.4
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.8e-94 347.8 288 62.5
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.0e-93 347.4 288 62.2
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.3e-93 346.3 288 62.5
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 6.6e-93 344.7 289 61.9
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 6.6e-93 344.7 285 63.5
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.1e-92 344.0 292 59.9
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 1.9e-92 343.2 290 60.0
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.5e-92 342.8 287 61.3
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 4.3e-92 342.0 274 65.7
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 4.3e-92 342.0 272 64.7
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.3e-92 342.0 291 61.5
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 7.3e-92 341.3 291 61.5
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.3e-91 340.5 292 62.3
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.6e-91 340.1 293 61.8
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 2.1e-91 339.7 285 62.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.6e-91 339.0 288 61.1
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.4e-90 337.0 236 68.2
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.4e-90 336.3 289 61.2
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 2.4e-90 336.3 290 60.7
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 4.0e-90 335.5 294 59.2
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.0e-90 335.5 269 63.9
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-89 333.6 267 62.9
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.6e-89 332.8 297 58.9
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.6e-89 332.8 297 58.9
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.6e-89 332.8 254 63.8
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.6e-89 331.3 290 61.0
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.3e-88 330.5 295 59.7
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.9e-88 329.3 288 58.7
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 6.4e-88 328.2 288 58.7
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 8.4e-88 327.8 285 57.5
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.1e-87 327.4 304 55.3
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 1.9e-87 326.6 315 56.5
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 3.2e-87 325.9 293 57.3
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 5.4e-87 325.1 298 57.7
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 7.1e-87 324.7 293 57.0
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 7.1e-87 324.7 285 57.5
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 9.3e-87 324.3 284 57.0
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.6e-86 323.6 303 53.8
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.6e-86 323.6 286 58.7
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 2.1e-86 323.2 288 57.3
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 2.7e-86 322.8 288 58.7
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 4.6e-86 322.0 287 58.9
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 6.0e-86 321.6 290 58.6
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 7.9e-86 321.2 258 62.4
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 3.0e-85 319.3 293 55.6
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 3.0e-85 319.3 291 56.7
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 5.1e-85 318.5 296 55.1
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 5.1e-85 318.5 288 58.0
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 6.7e-85 318.2 293 55.3
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 6.7e-85 318.2 293 55.3
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 8.7e-85 317.8 293 56.7
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 2.5e-84 316.2 288 58.0
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 3.3e-84 315.8 296 56.1
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 3.3e-84 315.8 284 54.9
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 4.3e-84 315.5 288 56.2
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 5.6e-84 315.1 328 50.6
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 7.4e-84 314.7 259 63.3
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 9.6e-84 314.3 285 57.9
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 9.6e-84 314.3 297 55.6
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.3e-83 313.9 341 51.3
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 2.1e-83 313.2 291 55.7
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.8e-83 312.0 275 62.5
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.4e-82 309.7 280 56.1
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.1e-82 309.3 262 61.5
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 4.0e-82 308.9 274 58.0
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.2e-81 307.4 292 55.5
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.5e-81 307.0 294 54.4
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 2.6e-81 306.2 296 54.7
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 2.6e-81 306.2 296 55.7
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 4.5e-81 305.4 292 54.8
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 5.8e-81 305.1 277 58.5
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 9.9e-81 304.3 286 54.2
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.2e-78 297.4 299 53.2
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 2.5e-76 289.7 223 61.4
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 7.4e-76 288.1 262 56.1
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 2.8e-75 286.2 205 67.3
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 3.7e-75 285.8 221 66.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 3.1e-74 282.7 257 58.4
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 4.0e-74 282.3 285 52.6
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 9.0e-74 281.2 283 53.4
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 2.6e-73 279.6 292 52.4
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.8e-73 278.5 220 65.0
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.3e-72 277.3 279 53.4
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.2e-72 276.6 289 50.2
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.8e-72 275.8 207 63.8
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 3.8e-72 275.8 212 62.3
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.4e-71 273.9 292 52.4
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 1.0e-69 267.7 284 51.1
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.6e-65 253.1 260 54.2
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 8.5e-64 248.1 226 58.0
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.2e-62 244.2 277 48.0
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.4e-58 230.7 189 59.3
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 3.8e-56 222.6 183 61.2
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 3.6e-54 216.1 201 58.7
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 8.8e-53 211.5 200 56.0
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.5e-52 210.7 226 53.5
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.5e-52 210.7 208 57.2
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 4.4e-52 209.1 251 42.2
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 4.8e-51 205.7 219 48.4
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 4.8e-51 205.7 149 69.8
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-50 204.5 233 51.9
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.5e-49 200.7 216 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 5.9e-49 198.7 278 38.5
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 2.2e-48 196.8 130 70.8
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 5.0e-48 195.7 268 45.5
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.8e-45 187.2 288 42.7
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.1e-42 177.9 272 39.7
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.8e-42 177.2 244 41.4
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 5.9e-41 172.2 121 65.3
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.5e-39 167.5 203 48.8
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.2e-38 164.5 115 65.2
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.2e-36 157.9 106 68.9
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 2.8e-35 153.3 170 50.6
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 5.5e-31 139.0 298 33.2
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 9.8e-28 128.3 84 70.2
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.4e-26 123.6 138 49.3
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 2.0e-25 120.6 219 37.0
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 9.5e-23 111.7 201 37.8
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.7e-19 100.9 174 40.2
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 3.2e-18 96.7 202 34.7
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 3.6e-14 83.2 227 27.3
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.6e-06 57.8 86 50.0


User provided reference genes

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