Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu024590.1 Olea europaea HOM05D004448 ORTHO05D005919 3.5e-252 874.4 416 100.0
CSS0023607 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 4.6e-119 432.2 376 57.4
Dinv42301 Davidia involucrata HOM05D004448 ORTHO05D005919 1.8e-115 420.2 394 55.1
Nitab4.5_0000938g0020 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.2e-113 413.3 370 55.1
Actinidia25266 Actinidia chinensis HOM05D004448 ORTHO05D005919 2.1e-111 406.8 374 55.6
PGSC0003DMG400033614 Solanum tuberosum HOM05D004448 ORTHO05D005919 6.0e-111 405.2 372 55.6
SalBow6G4094 Salvia bowleyana HOM05D004448 ORTHO05D005919 1.3e-110 404.1 386 56.7
Sopen07g011050 Solanum pennellii HOM05D004448 ORTHO05D005919 5.1e-110 402.1 369 54.7
Solyc07g021550.3 Solanum lycopersicum HOM05D004448 ORTHO05D005919 9.6e-109 397.9 369 54.7
Peaxi162Scf00175g00047 Petunia axillaris HOM05D004448 ORTHO05D005919 1.6e-108 397.1 370 54.9
Cc06_g11170 Coffea canephora HOM05D004448 ORTHO05D005919 8.1e-108 394.8 367 54.5
Dinv36750 Davidia involucrata HOM05D004448 ORTHO05D005919 2.4e-107 393.3 395 51.6
Rhsim05G0022900 Rhododendron simsii HOM05D004448 ORTHO05D005919 4.5e-106 389.0 424 48.6
Nitab4.5_0000713g0030 Nicotiana tabacum HOM05D004448 ORTHO05D005919 2.4e-104 383.3 408 48.0
Nitab4.5_0004087g0010 Nicotiana tabacum HOM05D004448 ORTHO05D005919 3.2e-104 382.9 374 50.8
RhsimUnG0189000 Rhododendron simsii HOM05D004448 ORTHO05D005919 3.2e-104 382.9 359 55.4
GSVIVG01015227001 Vitis vinifera HOM05D004448 ORTHO05D005919 3.2e-104 382.9 385 49.6
ClCG03G015750 Citrullus lanatus HOM05D004448 ORTHO05D005919 1.0e-102 377.9 375 52.8
Lsat_1_v5_gn_5_145680 Lactuca sativa HOM05D004448 ORTHO05D005919 2.1e-100 370.2 366 53.8
QL02p063021 Quercus lobata HOM05D004448 ORTHO05D005919 5.3e-99 365.5 392 50.0
HanXRQChr12g0354731 Helianthus annuus HOM05D004448 ORTHO05D005919 2.6e-98 363.2 375 50.1
Cfa003108 Carpinus fangiana HOM05D004448 ORTHO05D005919 3.4e-98 362.8 381 50.9
Haze_25890 Corylus avellana HOM05D004448 ORTHO05D005919 5.8e-98 362.1 382 51.0
TWI32G1061 Tripterygium wilfordii HOM05D004448 ORTHO05D005919 6.4e-97 358.6 387 48.3
vmacro17218 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.2e-96 355.9 374 51.1
vmacro22686 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 4.2e-96 355.9 374 51.1
Hma1.2p1_0663F.1_g198910 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 1.2e-95 354.4 375 51.2
FvH4_1g07151 Fragaria vesca HOM05D004448 ORTHO05D005919 7.9e-95 351.7 365 49.3
CANSAT56G0950 Cannabis sativa HOM05D004448 ORTHO05D005919 3.3e-93 346.3 384 49.0
FAN26G2794 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.4e-93 345.1 368 48.6
PSO210G3334 Papaver somniferum HOM05D004448 ORTHO05D005919 7.4e-93 345.1 413 45.5
Lj2g0008301 Lotus japonicus HOM05D004448 ORTHO05D005919 2.1e-92 343.6 374 50.5
MBI08_g34934_MAGBIO Magnolia biondii HOM05D004448 ORTHO05D005919 4.8e-92 342.4 377 47.7
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 6.2e-92 342.0 368 47.8
Prupe.7G212600 Prunus persica HOM05D004448 ORTHO05D005919 6.2e-92 342.0 377 50.4
PGR142G4073 Punica granatum HOM05D004448 ORTHO05D005919 6.2e-92 342.0 374 50.5
RcHm_v2.0_Chr2g0093041 Rosa chinensis HOM05D004448 ORTHO05D005919 6.2e-92 342.0 368 48.6
Sabra06G0118700 Salix brachista HOM05D004448 ORTHO05D005919 1.4e-91 340.9 366 50.5
Phvul.004G171600 Phaseolus vulgaris HOM05D004448 ORTHO05D005919 3.1e-91 339.7 367 50.4
Medtr7g090060 Medicago truncatula HOM05D004448 ORTHO05D005919 4.0e-91 339.3 389 48.6
COL.COLO4_18221 Corchorus olitorius HOM05D004448 ORTHO05D005919 5.3e-91 339.0 388 48.7
PSO210G5509 Papaver somniferum HOM05D004448 ORTHO05D005919 5.3e-91 339.0 416 44.7
Migut.J00591 Erythranthe guttata HOM05D004448 ORTHO05D005919 9.0e-91 338.2 303 58.7
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 2.6e-90 336.7 375 49.9
Nn8g38906 Nelumbo nucifera HOM05D004448 ORTHO05D005919 1.0e-89 334.7 412 46.1
AUR62027409 Chenopodium quinoa HOM05D004448 ORTHO05D005919 2.2e-89 333.6 372 48.7
unitig_0.g218 Utricularia gibba HOM05D004448 ORTHO05D005919 4.9e-89 332.4 382 48.7
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 6.5e-89 332.0 367 49.3
DCAR_024685 Daucus carota HOM05D004448 ORTHO05D005919 6.5e-89 332.0 355 50.7
ECA234G2909 Erigeron canadensis HOM05D004448 ORTHO05D005919 1.4e-88 330.9 297 55.9
arahy.Tifrunner.gnm1.ann1.6Q96ZG Arachis hypogaea HOM05D004448 ORTHO05D005919 1.9e-88 330.5 378 47.9
MELO3C015453.2 Cucumis melo HOM05D004448 ORTHO05D005919 1.9e-88 330.5 397 47.4
Psat1g049640 Pisum sativum HOM05D004448 ORTHO05D005919 2.5e-88 330.1 388 48.2
arahy.Tifrunner.gnm1.ann1.LLR3FQ Arachis hypogaea HOM05D004448 ORTHO05D005919 1.6e-87 327.4 377 47.7
Potri.006G150000 Populus trichocarpa HOM05D004448 ORTHO05D005919 1.6e-87 327.4 373 50.1
Duzib168G0645 Durio zibethinus HOM05D004448 ORTHO05D005919 3.5e-87 326.2 391 47.8
Gohir.D08G265800 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.5e-87 326.2 376 48.7
FAN19G1271 Fragaria x ananassa HOM05D004448 ORTHO05D005919 1.8e-86 323.9 369 46.9
Gohir.A08G245000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 3.9e-86 322.8 372 48.4
Medtr6g092520 Medicago truncatula HOM05D004448 ORTHO05D005919 6.7e-86 322.0 372 47.8
Gohir.D08G266000 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.5e-85 320.1 372 47.3
Manes.03G032000 Manihot esculenta HOM05D004448 ORTHO05D005919 2.5e-85 320.1 366 48.1
Thecc.09G092200 Theobroma cacao HOM05D004448 ORTHO05D005919 3.3e-85 319.7 393 48.3
CsaV3_1G040260 Cucumis sativus L. HOM05D004448 ORTHO05D005919 4.3e-85 319.3 378 47.9
CsaV3_UNG066510 Cucumis sativus L. HOM05D004448 ORTHO05D005919 4.3e-85 319.3 378 47.9
CiPaw.03G218000 Carya illinoinensis HOM05D004448 ORTHO05D005919 5.7e-85 318.9 376 47.3
EL10Ac8g19309 Beta vulgaris HOM05D004448 ORTHO05D005919 7.4e-85 318.5 367 47.7
FAN23G3053 Fragaria x ananassa HOM05D004448 ORTHO05D005919 7.4e-85 318.5 369 46.6
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 2.1e-84 317.0 385 45.7
Ah.14g085380 Amaranthus hybridus HOM05D004448 ORTHO05D005919 3.1e-83 313.2 389 46.0
Hund06702 Selenicereus undatus HOM05D004448 ORTHO05D005919 4.5e-82 309.3 371 45.0
Glyma.07G128700 Glycine max HOM05D004448 ORTHO05D005919 7.6e-82 308.5 370 48.1
Eucgr.C00913 Eucalyptus grandis HOM05D004448 ORTHO05D005919 1.0e-81 308.1 387 45.7
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 8.5e-81 305.1 371 48.0
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 3.2e-80 303.1 369 46.9
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 7.2e-80 302.0 411 42.1
CSS0050052 Camellia sinensis var. sinensis HOM05D004448 ORTHO05D005919 9.3e-80 301.6 432 41.7
RcHm_v2.0_Chr2g0093031 Rosa chinensis HOM05D004448 ORTHO05D005919 9.3e-80 301.6 361 46.0
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.6e-79 300.8 314 50.0
Atru.chr7.1561 Acer truncatum HOM05D004448 ORTHO05D005919 2.3e-78 297.0 401 42.9
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 2.3e-78 297.0 371 46.9
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 3.0e-78 296.6 378 43.4
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 5.1e-78 295.8 367 45.2
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.1e-77 294.7 370 46.2
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 1.5e-77 294.3 374 46.3
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 2.5e-77 293.5 374 46.0
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 7.4e-77 292.0 371 46.6
Rhsim03G0233500 Rhododendron simsii HOM05D004448 ORTHO05D005919 7.4e-77 292.0 348 46.3
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 1.4e-75 287.7 359 44.3
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 5.3e-75 285.8 373 45.3
Gohir.A08G244900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.2e-74 284.6 369 46.3
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.4e-74 283.1 365 46.3
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 3.4e-74 283.1 369 43.4
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 4.5e-74 282.7 369 45.8
CDE09G0006 Ceratophyllum demersum HOM05D004448 ORTHO05D005919 1.3e-73 281.2 373 44.0
Aqoxy5G03492 Aquilegia oxysepala HOM05D004448 ORTHO05D005919 6.5e-73 278.9 418 39.0
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 6.5e-73 278.9 418 41.4
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 6.5e-73 278.9 363 44.1
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 6.5e-73 278.9 388 42.8
vmacro06280 Vaccinium macrocarpon HOM05D004448 ORTHO05D005919 1.9e-72 277.3 312 48.4
Ciclev10008074m.g Citrus clementina HOM05D004448 ORTHO05D005919 2.3e-70 270.4 414 39.4
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 7.4e-69 265.4 352 44.0
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 3.1e-67 260.0 357 42.3
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 5.5e-64 249.2 326 43.9
Duzib150G0429 Durio zibethinus HOM05D004448 ORTHO05D005919 9.4e-64 248.4 421 38.5
Mapoly0070s0093 Marchantia polymorpha HOM05D004448 ORTHO05D005919 2.1e-63 247.3 416 38.0
Ca_08398_v3 Cicer arietinum L. HOM05D004448 ORTHO05D005919 2.7e-63 246.9 258 52.7
HPP92_006937 Vanilla planifolia HOM05D004448 ORTHO05D005919 3.0e-62 243.4 290 44.8
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 1.3e-60 238.0 365 38.9
ATR0705G152 Amborella trichopoda HOM05D004448 ORTHO05D005919 3.7e-60 236.5 304 45.1
Zm00001eb325970 Zea mays HOM05D004448 ORTHO05D005919 2.6e-58 230.3 333 41.1
Pp3c3_34250 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.7e-55 219.5 318 39.6
Rhsim03G0233900 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.5e-53 214.5 186 57.5
AagrBONN_evm.TU.Sc2ySwM_117.4075 Anthoceros agrestis HOM05D004448 ORTHO05D005919 5.7e-53 212.6 360 37.8
Gohir.A08G245100 Gossypium hirsutum HOM05D004448 ORTHO05D005919 1.7e-52 211.1 352 40.1
RhsimUnG0145000 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.4e-51 207.2 232 48.7
TPR.G40396 Trifolium pratense HOM05D004448 ORTHO05D005919 4.5e-50 203.0 226 50.0
Gorai.N024000 Gossypium raimondii HOM05D004448 ORTHO05D005919 2.5e-48 197.2 390 35.9
Sed0012121 Sechium edule HOM05D004448 ORTHO05D005919 4.2e-48 196.4 227 48.5
MD02G1076000 Malus domestica HOM05D004448 ORTHO05D005919 1.2e-45 188.3 153 59.5
SGA_v2.0_scaffold62G21589 Striga asiatica HOM05D004448 ORTHO05D005919 1.5e-45 188.0 148 60.8
Pp3c4_9790 Physcomitrium patens HOM05D004448 ORTHO05D005919 4.4e-45 186.4 320 36.2
FvH4_1g07150 Fragaria vesca HOM05D004448 ORTHO05D005919 1.7e-44 184.5 229 44.1
CARHR270520 Cardamine hirsuta HOM05D004448 ORTHO05D005919 6.3e-44 182.6 361 36.6
CANSAT56G3488 Cannabis sativa HOM05D004448 ORTHO05D005919 3.5e-42 176.8 230 43.5
CBR_g29538 Chara braunii HOM05D004448 ORTHO05D005919 4.5e-42 176.4 207 43.0
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.7e-41 174.5 331 35.6
Pp3c15_21310 Physcomitrium patens HOM05D004448 ORTHO05D005919 5.0e-41 172.9 397 31.2
TPR.G35500 Trifolium pratense HOM05D004448 ORTHO05D005919 1.2e-37 161.8 172 51.2
Pp3c27_3080 Physcomitrium patens HOM05D004448 ORTHO05D005919 2.6e-37 160.6 452 27.7
Pp3c16_1200 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.3e-36 156.0 370 30.5
TPR.G35590 Trifolium pratense HOM05D004448 ORTHO05D005919 9.5e-32 142.1 110 60.0
MD02G1075500 Malus domestica HOM05D004448 ORTHO05D005919 4.7e-31 139.8 224 38.8
Lalb_Chr24g0393831 Lupinus albus HOM05D004448 ORTHO05D005919 3.0e-30 137.1 156 49.4
Rhsim05G0023200 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-29 135.2 201 39.8
RhsimUnG0144800 Rhododendron simsii HOM05D004448 ORTHO05D005919 1.2e-29 135.2 201 39.8
Gohir.D08G265900 Gossypium hirsutum HOM05D004448 ORTHO05D005919 2.0e-29 134.4 390 29.7
Atru.chr7.1554 Acer truncatum HOM05D004448 ORTHO05D005919 1.7e-28 131.3 250 35.6
AT5G56770 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.7e-28 131.3 177 42.9
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.7e-28 131.3 298 33.6
AL8G32610 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 4.1e-27 126.7 170 40.0
Hma1.2p1_0024F.1_g016070 Hydrangea macrophylla HOM05D004448 ORTHO05D005919 5.0e-25 119.8 103 56.3
Atru.chr7.1555 Acer truncatum HOM05D004448 ORTHO05D005919 2.1e-23 114.4 100 54.0
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 2.3e-22 110.9 392 27.3
SalBow1G6253 Salvia bowleyana HOM05D004448 ORTHO05D005919 9.8e-21 105.5 131 44.3
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 2.2e-20 104.4 396 25.8
Carub.0008s1725 Capsella rubella HOM05D004448 ORTHO05D005919 4.1e-19 100.1 191 34.6
Medtr6g092500 Medicago truncatula HOM05D004448 ORTHO05D005919 7.0e-19 99.4 147 38.8
Pp3c5_7060 Physcomitrium patens HOM05D004448 ORTHO05D005919 1.6e-18 98.2 209 32.1
Pp3c9_23170 Physcomitrium patens HOM05D004448 ORTHO05D005919 6.6e-17 92.8 204 34.3
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 8.6e-17 92.4 403 25.6
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 3.3e-16 90.5 455 24.0
RhsimUnG0032400 Rhododendron simsii HOM05D004448 ORTHO05D005919 2.1e-15 87.8 231 28.6
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 6.8e-14 82.8 108 44.4
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 4.4e-13 80.1 130 38.5
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 1.7e-12 78.2 135 34.8
FvH4_1g07231 Fragaria vesca HOM05D004448 ORTHO05D005919 8.3e-12 75.9 98 44.9
Glyma.01G003300 Glycine max HOM05D004448 ORTHO05D005919 1.4e-11 75.1 105 44.8
Medtr6g092480 Medicago truncatula HOM05D012533 ORTHO05D264910 2.4e-11 74.3 58 56.9
CBR_g20264 Chara braunii HOM05D000505 ORTHO05D000301 4.1e-11 73.6 142 31.7
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 1.5e-08 65.1 101 37.6


User provided reference genes

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